These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5116#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1263 fasta sequence [GCACAACCTTTGCGTAGTGTACGTGGAGCGAGGCAAACTGTTACAAGCGCAGGATTGCCTCTCCCACGCCCACGAGCTAGCACCGGGTGAGGAGTACATCGGCCGACATCTTCAGATCGTGCAAACGCGCATCAATCGTCTGCGACAGTCGCCGGACGGAAGTCGGGAGAAGGAAATTGCCTTCGCAGACTATGATCCGCAGGAGTTTGGTGGCCGTGCCGGCCGTACACTGTCATCCGATAGTGTCGACCTGTTGCCGTCGCTTGGCAATAGCATTGTAAATAGTAATAGCGAAGAACCGAATGGCCAAGAGGGCGATCTGTCGAAAGAAGATGCCGAGGTTCCGTTCGGTTACGATAATAAGAAGAAAACAGTATTACCTCACCAGCAGCTAGAGCCACAGGCTGCACCGCTTCCAGCGGACGATGATCCGGTGTTTCTCGAGTCGGATAACACAAACAGTCCACAAAGTTTTGCAGCAACGGTAGTAGACAGTATAGCACACGATTCGAAGCACCACCGTACCGACGGTAGCAGTAGTGGCAACCATGCTCCAACAGCTGTCCATCGGGATGATGGTGTGCCTTCGGTGAAGCGTGCCGATGTCAGCCATCCTCCATCCGATGGTTCCCTTCATCATGCTCATCCCGCGCAGCAGCATCTGCATCGACCGAAAACGATCGGACAGGATCTGGACGATCCATCGTCCGGGATGTCATAGCATCACATTCTTGACTACAAGCTTGATTGTTTCAAAATCAACTAGGACTACTGCACCTCCCCGCAAGAACTATCCTTGTAAATAGGTAGCCGAAAACGGACGAGCAGCGGGACGAGTGAAGCAAAAACGAAGCAGCGTAGGTGTGAGGTAAGATAGTGTATGTGTTCCTATCGGAAATGGACTGCGAAAGACTAACTTTTGACTGATTTGTTAAACCAGAACTAACAGCTAAGCCACTTCAAAACCAGATCTCACAAAGATCGTGCAAAGATGGAAGATGAAGCTGTGCATTGAATGCACTGTTCGGGGCACTGTGGGTGAGAATGCCGCACGAGGCAAAGGGAACGATTCTGAAAGCCGAAGGAAAATCCTTCCTCTGTTTTGTTCTCGTTTTGTTGCATTTTCAGGTAGCAAATTGTTAGCATCGATTGTCGTACGAATGCGGTTTGGAGTGAATCAGTGCATCTGTATGCAATTGTACGAATGCAAGTATGTGTGTATGTGTGCGTAATTTGTTAGGAATGAATGTTGGAGACACAAAA] [+] EMBL BX607843 [GCACAACCTTTGCGTAGTGTACGTGGAGCGAGGCAAACTGTTACAAGCGCAGGATTGCCTCTCCCACGCCCACGAGCTAGCACCGGGTGAGGAGTACATCGGCCGACATCTTCAGATCGTGCAAACGCGCATCAATCGTCTGCGACAGTCGCCGGACGGAAGTCGGGAGAAGGAAATTGCCTTCGCAGACTATGATCCGCAGGAGTTTGGTGGCCGTGCCGGCCGTACACTGTCATCCGATAGTGTCGACCTGTTGCCGTCGCTTGGCAATAGCATTGTAAATAGTAATAGCGAAGAACCGAATGGCCAAGAGGGCGATCTGTCGAAAGAAGATGCCGAGGTTCCGTTCGGTTACGATAATAAGAAGAAAACAGTATTACCTCACCAGCAGCTAGAGCCACAGGCTGCACCGCTTCCAGCGGACGATGATCCGGTGTTTCTCGAGTCGGATAACACAAACAGTCCACAAAGTTTTGCAGCAACGGTAGTAGACAGTATAGCACACGATTCGAAGCACCACCGTACCGACGGTAGCAGTAGTGGCAACCATGCTCCAACAGCTGTCCATCGGGATGATGGTGTGCCTTCGGTGAAGCGTGCCGATGTCAGCCATCCTCCATCCGATGGTTCCCTTCATCATGCTCATCCCGCGCAGCAGCATCTGCATCGACCGAAAACGATCGGACAGGATCTGGACGATCCATCGTCCGGGATGTCATAGCATCACATTCTTGACTACAAGCTTGATTGTTTCAAAATCAACTAGGACTACTGCACCTCCCCGCAAGAACTATCCTTGTAAATAGGTAGCCGAAAACGGACGAGCAGCGGGACGAG ] [+] EMBL BM611057 [ ccgGGTTCCCTTCATCATGCTCATCCCGCGCAGCAGCATCTGCATCGACCGAAAACGATCGGACAGGATCTGGACGATCCATCGTCCGGGATGTCATAGCATCACATTCTTGACTACAAGCTTGATTGTTTCAAAATCAACTAAGACTACTGCACCTCCCCGCAAGAACTATCCTTGTAAATAGGTAGCCGAAAACGGACGAGCAGCGGGACGAGTGAAGCAAAAACGAAGCAGCGTAGGTGTGAGGTAAGATAGTGTATGTGTTCCTATCGGAAATGGACTGCGAAAGACTAACTTTTGACTGATTTGTTAAACCAGAACTAACAGCTAAGCCACTTCAAAACCAGATCTCACAAAGATCGTGCAAAGATGGAAGATGAAGCTGTGCATTGAATGCACTGTTCGGGGCACTGTGGGTGAGAATGCCGCACGAGGCAAAGGGAACGATTCTGAAAGCCGAAGGAAAATCCTTCCTCTGTTTTGTTCTCGTTTTGTTGCATTTTCAGGTAGCAAATTGTTAGCATCGATTGTCGTACGAATGCGGTTTGGAGTGAATCAGTGCATCTGTATGCAATTGTACGAATGCAAGTATGTGTGTATGTGTGCGTAATTTGTTAGGAATGAATGTTGGAGACACAAAA] consensusID : consensus_5116#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 586 fasta sequence [CCCCCGAGGTTATTCTTGACTACAAGCTTGATTGTTTCAAATCAACTAAGACTACTGCACCTCCCCGCAAGAACTATCCTTGTAAATAGGTAGCCGAAAACGGACGAGCAGCGGGACGAGTGAAGCAAAAACGAAGCAGCGTAGGTGTGAGGTAAGATAGTGTATGTGTTCCTATCGGAAATGGACTGCGAAAGACTAACTTTTGACTGATTTGTTAAACCAGAACTAACAGCTAAGCCACTTCAAAACCAGATCTCACAAAGATCGTGCAAAGATGGAAGATGAAGCTGTGCATTGAATGCACTGTTCGGGGCACTGTGGGTGAGAATGCCGCACGAGGCAAAGNGGAACGATTCTGAAAGCCGAAGGAAAATCCTTCCTCTGTTTGTTCTCGTTTGTTGCATTTTCAGGTAGCAAATTGTTAGCATCGATTGTCGTNACGAATGCGGTTTGGAGTGAATCAGTGCATCTGTATGCAATTGTACGAATGCAAGTATGTGTGTATGTGTGCGTAACTTTGTCTAGCGAATGAATGTCGGAGACACAAAANACGCGCACTACTCTCTCTACTATATACAACCATAAA] [+] EMBL AL693141 [CCCCCGAGGTTATTCTTGACTACAAGCTTGATTGTTTCAAATCAACTAAGACTACTGCACCTCCCCGCAAGAACTATCCTTGTAAATAGGTAGCCGAAAACGGACGAGCAGCGGGACGAGTGAAGCAAAAACGAAGCAGCGTAGGTGTGAGGTAAGATAGTGTATGTGTTCCTATCGGAAATGGACTGCGAAAGACTAACTTTTGACTGATTTGTTAAACCAGAACTAACAGCTAAGCCACTTCAAAACCAGATCTCACAAAGATCGTGCAAAGATGGAAGATGAAGCTGTGCATTGAATGCACTGTTCGGGGCACTGTGGGTGAGAATGCCGCACGAGGCAAAGNGGAACGATTCTGAAAGCCGAAGGAAAATCCTTCCTCTGTTTGTTCTCGTTTGTTGCATTTTCAGGTAGCAAATTGTTAGCATCGATTGTCGTNACGAATGCGGTTTGGAGTGAATCAGTGCATCTGTATGCAATTGTACGAATGCAAGTATGTGTGTATGTGTGCGTAACTTTGTCTAGCGAATGAATGTCGGAGACACAAAANACGCGCACTACTCTCTCTACTATATACAACCATAAA] consensusID : consensus_5116#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 310 fasta sequence [GAATCGCCACGAGGTTTAGCACACGATTCGAAGCACACCGTACCGACGGTAGCAGTAGTGGCAACCATGCCCCAACCGCTGTCCATCGGGATGATGGTGTGCCTTCGGTGAAGCGTGCCGATGTCAGCCATCCTCCATCCGATGGTTCCCTTCATCATGCTCATCCCGCGCAGCAGCATCTGCATCGACCGAAAACGATCGGACAGGATCTGGACGATCCATCGTCCGGGATGTCATAGCATCATATTCTTGACTACAAGCTTGATTGTTTCAAAATCAACTAGGACTACTGCACCTCCCCGCAAGAACT] [+] EMBL BX468951 [GAATCGCCACGAGGTTTAGCACACGATTCGAAGCACACCGTACCGACGGTAGCAGTAGTGGCAACCATGCCCCAACCGCTGTCCATCGGGATGATGGTGTGCCTTCGGTGAAGCGTGCCGATGTCAGCCATCCTCCATCCGATGGTTCCCTTCATCATGCTCATCCCGCGCAGCAGCATCTGCATCGACCGAAAACGATCGGACAGGATCTGGACGATCCATCGTCCGGGATGTCATAGCATCATATTCTTGACTACAAGCTTGATTGTTTCAAAATCAACTAGGACTACTGCACCTCCCCGCAAGAACT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_5116#0 GCACAACCTTTGCGTAGTGTACGTGGAGCGAGGCAAACTGTTACAAGCGCAGGATTGCCT 60 consensus_5116#2 ------------------------------------------------------------ consensus_5116#1 ------------------------------------------------------------ consensus_5116#0 CTCCCACGCCCACGAGCTAGCACCGGGTGAGGAGTACATCGGCCGACATCTTCAGATCGT 120 consensus_5116#2 ------------------------------------------------------------ consensus_5116#1 ------------------------------------------------------------ consensus_5116#0 GCAAACGCGCATCAATCGTCTGCGACAGTCGCCGGACGGAAGTCGGGAGAAGGAAATTGC 180 consensus_5116#2 ------------------------------------------------------------ consensus_5116#1 ------------------------------------------------------------ consensus_5116#0 CTTCGCAGACTATGATCCGCAGGAGTTTGGTGGCCGTGCCGGCCGTACACTGTCATCCGA 240 consensus_5116#2 ------------------------------------------------------------ consensus_5116#1 ------------------------------------------------------------ consensus_5116#0 TAGTGTCGACCTGTTGCCGTCGCTTGGCAATAGCATTGTAAATAGTAATAGCGAAGAACC 300 consensus_5116#2 ------------------------------------------------------------ consensus_5116#1 ----------------CCCCCGAGGTTATTCTTGACTACAAGCTTGATTGTTTCAAATCA 44 consensus_5116#0 GAATGGCCAAGAGGGCGATCTGTCGAAAGAAGATGCCGAGGTTCCGTTCGGTTACGATAA 360 consensus_5116#2 ------------------------------------------------------------ consensus_5116#1 ACTAAGACTACTGCACCTCCCCGCAAGAACTATCCTTGTAAATAGGTAGCCGAAAACGGA 104 consensus_5116#0 TAAGAAGAAAACAGTATTACCTCACCAGCAGCTAGAGCCACAGGCTGCACCGCTTCCAGC 420 consensus_5116#2 ------------------------------------------------------------ consensus_5116#1 CGAGCAGCGGGACGAGTGAAGCAAAAACGAAGCAGCGTAGGTGTGAGGTAAGATAGTGTA 164 consensus_5116#0 GGACGATGATCCGGTGTTTCTCGAGTCGGATAACACAAACAGTCCACAAAGTTTTGCAGC 480 consensus_5116#2 ----------------------------------------------------------GA 2 consensus_5116#1 TGTGTTCCTATCGGAAATGGACTGCGAAAGACTAACTTTTGACTGATTTGTTAAACCAGA 224 * consensus_5116#0 AACGGTA--GTAGACAGTATAGCACACGATTCGAAGCACCACCGTACC--GACGGTAGCA 536 consensus_5116#2 ATCGCCA--CGAG---GTTTAGCACACGATTCGAAGCAC-ACCGTACC--GACGGTAGCA 54 consensus_5116#1 ACTAACAGCTAAGCCACTTCAAAACCAGATCTCACAAAG-ATCGTGCAAAGATGGAAGAT 283 * * ** * * ** *** * * * *** * ** ** ** consensus_5116#0 GTAGTGGCAACC---ATGCTCCAACAGCTGTCCATCGGGATGATGGTGT-GCCTTCGGTG 592 consensus_5116#2 GTAGTGGCAACC---ATGCCCCAACCGCTGTCCATCGGGATGATGGTGT-GCCTTCGGTG 110 consensus_5116#1 GAAGCTGTGCATTGAATGCACTGTTCGGGGCAC-TGTGGGTGAGAATGCCGCACGAGGCA 342 * ** * **** * * * * * ** *** ** ** ** consensus_5116#0 AAGCGTGCCGATGTC---AGCC--------ATCCTCCATCCGATGGTTCCC-TTCATCAT 640 consensus_5116#2 AAGCGTGCCGATGTC---AGCC--------ATCCTCCATCCGATGGTTCCC-TTCATCAT 158 consensus_5116#1 AAGNGGAACGATTCTGAAAGCCGAAGGAAAATCCTTCCTCTGTTTGTTCTCGTTTGTTGC 402 *** * **** **** ***** * ** * * **** * ** * consensus_5116#0 GCTCATCCCGCGCAGCAGCATCTGCATCGACCG--AAAACGAT--CGGACAGGATCTGGA 696 consensus_5116#2 GCTCATCCCGCGCAGCAGCATCTGCATCGACCG--AAAACGAT--CGGACAGGATCTGGA 214 consensus_5116#1 ATTT-TCAGGTAGCAAATTGTTAGCATCGATTGTCGTNACGAATGCGGTTTGGAGTGAAT 461 * ** * * * ******* * **** *** *** consensus_5116#0 CGATCCATC-GTCCGGGATGTCATAGCATCA--CATTCTTGACTACAAGCTTGATTGTTT 753 consensus_5116#2 CGATCCATC-GTCCGGGATGTCATAGCATCA--TATTCTTGACTACAAGCTTGATTGTTT 271 consensus_5116#1 CAGTGCATCTGTATGCAATTGTACGAATGCAAGTATGTGTGTATGTGTGCGTAACTTTGT 521 * * **** ** * ** * ** ** ** * ** * * * * * consensus_5116#0 CAA---AATCAACTAGGACTACTGCACCTCCCCGCAAGAACTATCCTTGTAAATAGGTAG 810 consensus_5116#2 CAA---AATCAACTAGGACTACTGCACCTCCCCGCAAGAACT------------------ 310 consensus_5116#1 CTAGCGAATGAATGTCGGAGACACAAAANACGCGCACTACTCTCTCTACTATATACAACC 581 * * *** ** * ** * * **** * consensus_5116#0 CCGAAAACGGACGAGCAGCGGGACGAGTGAAGCAAAAACGAAGCAGCGTAGGTGTGAGGT 870 consensus_5116#2 ------------------------------------------------------------ consensus_5116#1 ATAAA------------------------------------------------------- 586 consensus_5116#0 AAGATAGTGTATGTGTTCCTATCGGAAATGGACTGCGAAAGACTAACTTTTGACTGATTT 930 consensus_5116#2 ------------------------------------------------------------ consensus_5116#1 ------------------------------------------------------------ consensus_5116#0 GTTAAACCAGAACTAACAGCTAAGCCACTTCAAAACCAGATCTCACAAAGATCGTGCAAA 990 consensus_5116#2 ------------------------------------------------------------ consensus_5116#1 ------------------------------------------------------------ consensus_5116#0 GATGGAAGATGAAGCTGTGCATTGAATGCACTGTTCGGGGCACTGTGGGTGAGAATGCCG 1050 consensus_5116#2 ------------------------------------------------------------ consensus_5116#1 ------------------------------------------------------------ consensus_5116#0 CACGAGGCAAAGGGAACGATTCTGAAAGCCGAAGGAAAATCCTTCCTCTGTTTTGTTCTC 1110 consensus_5116#2 ------------------------------------------------------------ consensus_5116#1 ------------------------------------------------------------ consensus_5116#0 GTTTTGTTGCATTTTCAGGTAGCAAATTGTTAGCATCGATTGTCGTACGAATGCGGTTTG 1170 consensus_5116#2 ------------------------------------------------------------ consensus_5116#1 ------------------------------------------------------------ consensus_5116#0 GAGTGAATCAGTGCATCTGTATGCAATTGTACGAATGCAAGTATGTGTGTATGTGTGCGT 1230 consensus_5116#2 ------------------------------------------------------------ consensus_5116#1 ------------------------------------------------------------ consensus_5116#0 AATTTGTTAGGAATGAATGTTGGAGACACAAAA 1263 consensus_5116#2 --------------------------------- consensus_5116#1 --------------------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||