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Anopheles gambiae
cluster # 5116 cluster # 5116       Sequences # 4       consensus # 3


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_5116#0 length = 1263 sequences # 2  
consensus_5116#1 length = 586 sequences # 1  
consensus_5116#2 length = 310 sequences # 1  

consensusID : consensus_5116#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 1263
fasta sequence
                              [GCACAACCTTTGCGTAGTGTACGTGGAGCGAGGCAAACTGTTACAAGCGCAGGATTGCCTCTCCCACGCCCACGAGCTAGCACCGGGTGAGGAGTACATCGGCCGACATCTTCAGATCGTGCAAACGCGCATCAATCGTCTGCGACAGTCGCCGGACGGAAGTCGGGAGAAGGAAATTGCCTTCGCAGACTATGATCCGCAGGAGTTTGGTGGCCGTGCCGGCCGTACACTGTCATCCGATAGTGTCGACCTGTTGCCGTCGCTTGGCAATAGCATTGTAAATAGTAATAGCGAAGAACCGAATGGCCAAGAGGGCGATCTGTCGAAAGAAGATGCCGAGGTTCCGTTCGGTTACGATAATAAGAAGAAAACAGTATTACCTCACCAGCAGCTAGAGCCACAGGCTGCACCGCTTCCAGCGGACGATGATCCGGTGTTTCTCGAGTCGGATAACACAAACAGTCCACAAAGTTTTGCAGCAACGGTAGTAGACAGTATAGCACACGATTCGAAGCACCACCGTACCGACGGTAGCAGTAGTGGCAACCATGCTCCAACAGCTGTCCATCGGGATGATGGTGTGCCTTCGGTGAAGCGTGCCGATGTCAGCCATCCTCCATCCGATGGTTCCCTTCATCATGCTCATCCCGCGCAGCAGCATCTGCATCGACCGAAAACGATCGGACAGGATCTGGACGATCCATCGTCCGGGATGTCATAGCATCACATTCTTGACTACAAGCTTGATTGTTTCAAAATCAACTAGGACTACTGCACCTCCCCGCAAGAACTATCCTTGTAAATAGGTAGCCGAAAACGGACGAGCAGCGGGACGAGTGAAGCAAAAACGAAGCAGCGTAGGTGTGAGGTAAGATAGTGTATGTGTTCCTATCGGAAATGGACTGCGAAAGACTAACTTTTGACTGATTTGTTAAACCAGAACTAACAGCTAAGCCACTTCAAAACCAGATCTCACAAAGATCGTGCAAAGATGGAAGATGAAGCTGTGCATTGAATGCACTGTTCGGGGCACTGTGGGTGAGAATGCCGCACGAGGCAAAGGGAACGATTCTGAAAGCCGAAGGAAAATCCTTCCTCTGTTTTGTTCTCGTTTTGTTGCATTTTCAGGTAGCAAATTGTTAGCATCGATTGTCGTACGAATGCGGTTTGGAGTGAATCAGTGCATCTGTATGCAATTGTACGAATGCAAGTATGTGTGTATGTGTGCGTAATTTGTTAGGAATGAATGTTGGAGACACAAAA]

[+] EMBL BX607843             [GCACAACCTTTGCGTAGTGTACGTGGAGCGAGGCAAACTGTTACAAGCGCAGGATTGCCTCTCCCACGCCCACGAGCTAGCACCGGGTGAGGAGTACATCGGCCGACATCTTCAGATCGTGCAAACGCGCATCAATCGTCTGCGACAGTCGCCGGACGGAAGTCGGGAGAAGGAAATTGCCTTCGCAGACTATGATCCGCAGGAGTTTGGTGGCCGTGCCGGCCGTACACTGTCATCCGATAGTGTCGACCTGTTGCCGTCGCTTGGCAATAGCATTGTAAATAGTAATAGCGAAGAACCGAATGGCCAAGAGGGCGATCTGTCGAAAGAAGATGCCGAGGTTCCGTTCGGTTACGATAATAAGAAGAAAACAGTATTACCTCACCAGCAGCTAGAGCCACAGGCTGCACCGCTTCCAGCGGACGATGATCCGGTGTTTCTCGAGTCGGATAACACAAACAGTCCACAAAGTTTTGCAGCAACGGTAGTAGACAGTATAGCACACGATTCGAAGCACCACCGTACCGACGGTAGCAGTAGTGGCAACCATGCTCCAACAGCTGTCCATCGGGATGATGGTGTGCCTTCGGTGAAGCGTGCCGATGTCAGCCATCCTCCATCCGATGGTTCCCTTCATCATGCTCATCCCGCGCAGCAGCATCTGCATCGACCGAAAACGATCGGACAGGATCTGGACGATCCATCGTCCGGGATGTCATAGCATCACATTCTTGACTACAAGCTTGATTGTTTCAAAATCAACTAGGACTACTGCACCTCCCCGCAAGAACTATCCTTGTAAATAGGTAGCCGAAAACGGACGAGCAGCGGGACGAG                                                                                                                                                                                                                                                                                                                                                                                                                                          ]
[+] EMBL BM611057             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                              ccgGGTTCCCTTCATCATGCTCATCCCGCGCAGCAGCATCTGCATCGACCGAAAACGATCGGACAGGATCTGGACGATCCATCGTCCGGGATGTCATAGCATCACATTCTTGACTACAAGCTTGATTGTTTCAAAATCAACTAAGACTACTGCACCTCCCCGCAAGAACTATCCTTGTAAATAGGTAGCCGAAAACGGACGAGCAGCGGGACGAGTGAAGCAAAAACGAAGCAGCGTAGGTGTGAGGTAAGATAGTGTATGTGTTCCTATCGGAAATGGACTGCGAAAGACTAACTTTTGACTGATTTGTTAAACCAGAACTAACAGCTAAGCCACTTCAAAACCAGATCTCACAAAGATCGTGCAAAGATGGAAGATGAAGCTGTGCATTGAATGCACTGTTCGGGGCACTGTGGGTGAGAATGCCGCACGAGGCAAAGGGAACGATTCTGAAAGCCGAAGGAAAATCCTTCCTCTGTTTTGTTCTCGTTTTGTTGCATTTTCAGGTAGCAAATTGTTAGCATCGATTGTCGTACGAATGCGGTTTGGAGTGAATCAGTGCATCTGTATGCAATTGTACGAATGCAAGTATGTGTGTATGTGTGCGTAATTTGTTAGGAATGAATGTTGGAGACACAAAA]


>consensus_5116#0 GCACAACCTTTGCGTAGTGTACGTGGAGCGAGGCAAACTGTTACAAGCGCAGGATTGCCT CTCCCACGCCCACGAGCTAGCACCGGGTGAGGAGTACATCGGCCGACATCTTCAGATCGT GCAAACGCGCATCAATCGTCTGCGACAGTCGCCGGACGGAAGTCGGGAGAAGGAAATTGC CTTCGCAGACTATGATCCGCAGGAGTTTGGTGGCCGTGCCGGCCGTACACTGTCATCCGA TAGTGTCGACCTGTTGCCGTCGCTTGGCAATAGCATTGTAAATAGTAATAGCGAAGAACC GAATGGCCAAGAGGGCGATCTGTCGAAAGAAGATGCCGAGGTTCCGTTCGGTTACGATAA TAAGAAGAAAACAGTATTACCTCACCAGCAGCTAGAGCCACAGGCTGCACCGCTTCCAGC GGACGATGATCCGGTGTTTCTCGAGTCGGATAACACAAACAGTCCACAAAGTTTTGCAGC AACGGTAGTAGACAGTATAGCACACGATTCGAAGCACCACCGTACCGACGGTAGCAGTAG TGGCAACCATGCTCCAACAGCTGTCCATCGGGATGATGGTGTGCCTTCGGTGAAGCGTGC CGATGTCAGCCATCCTCCATCCGATGGTTCCCTTCATCATGCTCATCCCGCGCAGCAGCA TCTGCATCGACCGAAAACGATCGGACAGGATCTGGACGATCCATCGTCCGGGATGTCATA GCATCACATTCTTGACTACAAGCTTGATTGTTTCAAAATCAACTAGGACTACTGCACCTC CCCGCAAGAACTATCCTTGTAAATAGGTAGCCGAAAACGGACGAGCAGCGGGACGAGTGA AGCAAAAACGAAGCAGCGTAGGTGTGAGGTAAGATAGTGTATGTGTTCCTATCGGAAATG GACTGCGAAAGACTAACTTTTGACTGATTTGTTAAACCAGAACTAACAGCTAAGCCACTT CAAAACCAGATCTCACAAAGATCGTGCAAAGATGGAAGATGAAGCTGTGCATTGAATGCA CTGTTCGGGGCACTGTGGGTGAGAATGCCGCACGAGGCAAAGGGAACGATTCTGAAAGCC GAAGGAAAATCCTTCCTCTGTTTTGTTCTCGTTTTGTTGCATTTTCAGGTAGCAAATTGT TAGCATCGATTGTCGTACGAATGCGGTTTGGAGTGAATCAGTGCATCTGTATGCAATTGT ACGAATGCAAGTATGTGTGTATGTGTGCGTAATTTGTTAGGAATGAATGTTGGAGACACA AAA



consensusID : consensus_5116#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 586
fasta sequence
                              [CCCCCGAGGTTATTCTTGACTACAAGCTTGATTGTTTCAAATCAACTAAGACTACTGCACCTCCCCGCAAGAACTATCCTTGTAAATAGGTAGCCGAAAACGGACGAGCAGCGGGACGAGTGAAGCAAAAACGAAGCAGCGTAGGTGTGAGGTAAGATAGTGTATGTGTTCCTATCGGAAATGGACTGCGAAAGACTAACTTTTGACTGATTTGTTAAACCAGAACTAACAGCTAAGCCACTTCAAAACCAGATCTCACAAAGATCGTGCAAAGATGGAAGATGAAGCTGTGCATTGAATGCACTGTTCGGGGCACTGTGGGTGAGAATGCCGCACGAGGCAAAGNGGAACGATTCTGAAAGCCGAAGGAAAATCCTTCCTCTGTTTGTTCTCGTTTGTTGCATTTTCAGGTAGCAAATTGTTAGCATCGATTGTCGTNACGAATGCGGTTTGGAGTGAATCAGTGCATCTGTATGCAATTGTACGAATGCAAGTATGTGTGTATGTGTGCGTAACTTTGTCTAGCGAATGAATGTCGGAGACACAAAANACGCGCACTACTCTCTCTACTATATACAACCATAAA]

[+] EMBL AL693141             [CCCCCGAGGTTATTCTTGACTACAAGCTTGATTGTTTCAAATCAACTAAGACTACTGCACCTCCCCGCAAGAACTATCCTTGTAAATAGGTAGCCGAAAACGGACGAGCAGCGGGACGAGTGAAGCAAAAACGAAGCAGCGTAGGTGTGAGGTAAGATAGTGTATGTGTTCCTATCGGAAATGGACTGCGAAAGACTAACTTTTGACTGATTTGTTAAACCAGAACTAACAGCTAAGCCACTTCAAAACCAGATCTCACAAAGATCGTGCAAAGATGGAAGATGAAGCTGTGCATTGAATGCACTGTTCGGGGCACTGTGGGTGAGAATGCCGCACGAGGCAAAGNGGAACGATTCTGAAAGCCGAAGGAAAATCCTTCCTCTGTTTGTTCTCGTTTGTTGCATTTTCAGGTAGCAAATTGTTAGCATCGATTGTCGTNACGAATGCGGTTTGGAGTGAATCAGTGCATCTGTATGCAATTGTACGAATGCAAGTATGTGTGTATGTGTGCGTAACTTTGTCTAGCGAATGAATGTCGGAGACACAAAANACGCGCACTACTCTCTCTACTATATACAACCATAAA]


>consensus_5116#1 CCCCCGAGGTTATTCTTGACTACAAGCTTGATTGTTTCAAATCAACTAAGACTACTGCAC CTCCCCGCAAGAACTATCCTTGTAAATAGGTAGCCGAAAACGGACGAGCAGCGGGACGAG TGAAGCAAAAACGAAGCAGCGTAGGTGTGAGGTAAGATAGTGTATGTGTTCCTATCGGAA ATGGACTGCGAAAGACTAACTTTTGACTGATTTGTTAAACCAGAACTAACAGCTAAGCCA CTTCAAAACCAGATCTCACAAAGATCGTGCAAAGATGGAAGATGAAGCTGTGCATTGAAT GCACTGTTCGGGGCACTGTGGGTGAGAATGCCGCACGAGGCAAAGNGGAACGATTCTGAA AGCCGAAGGAAAATCCTTCCTCTGTTTGTTCTCGTTTGTTGCATTTTCAGGTAGCAAATT GTTAGCATCGATTGTCGTNACGAATGCGGTTTGGAGTGAATCAGTGCATCTGTATGCAAT TGTACGAATGCAAGTATGTGTGTATGTGTGCGTAACTTTGTCTAGCGAATGAATGTCGGA GACACAAAANACGCGCACTACTCTCTCTACTATATACAACCATAAA



consensusID : consensus_5116#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 310
fasta sequence
                              [GAATCGCCACGAGGTTTAGCACACGATTCGAAGCACACCGTACCGACGGTAGCAGTAGTGGCAACCATGCCCCAACCGCTGTCCATCGGGATGATGGTGTGCCTTCGGTGAAGCGTGCCGATGTCAGCCATCCTCCATCCGATGGTTCCCTTCATCATGCTCATCCCGCGCAGCAGCATCTGCATCGACCGAAAACGATCGGACAGGATCTGGACGATCCATCGTCCGGGATGTCATAGCATCATATTCTTGACTACAAGCTTGATTGTTTCAAAATCAACTAGGACTACTGCACCTCCCCGCAAGAACT]

[+] EMBL BX468951             [GAATCGCCACGAGGTTTAGCACACGATTCGAAGCACACCGTACCGACGGTAGCAGTAGTGGCAACCATGCCCCAACCGCTGTCCATCGGGATGATGGTGTGCCTTCGGTGAAGCGTGCCGATGTCAGCCATCCTCCATCCGATGGTTCCCTTCATCATGCTCATCCCGCGCAGCAGCATCTGCATCGACCGAAAACGATCGGACAGGATCTGGACGATCCATCGTCCGGGATGTCATAGCATCATATTCTTGACTACAAGCTTGATTGTTTCAAAATCAACTAGGACTACTGCACCTCCCCGCAAGAACT]


>consensus_5116#2 GAATCGCCACGAGGTTTAGCACACGATTCGAAGCACACCGTACCGACGGTAGCAGTAGTG GCAACCATGCCCCAACCGCTGTCCATCGGGATGATGGTGTGCCTTCGGTGAAGCGTGCCG ATGTCAGCCATCCTCCATCCGATGGTTCCCTTCATCATGCTCATCCCGCGCAGCAGCATC TGCATCGACCGAAAACGATCGGACAGGATCTGGACGATCCATCGTCCGGGATGTCATAGC ATCATATTCTTGACTACAAGCTTGATTGTTTCAAAATCAACTAGGACTACTGCACCTCCC CGCAAGAACT



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_5116#0      GCACAACCTTTGCGTAGTGTACGTGGAGCGAGGCAAACTGTTACAAGCGCAGGATTGCCT 60
consensus_5116#2      ------------------------------------------------------------
consensus_5116#1      ------------------------------------------------------------
                                                                                  

consensus_5116#0      CTCCCACGCCCACGAGCTAGCACCGGGTGAGGAGTACATCGGCCGACATCTTCAGATCGT 120
consensus_5116#2      ------------------------------------------------------------
consensus_5116#1      ------------------------------------------------------------
                                                                                  

consensus_5116#0      GCAAACGCGCATCAATCGTCTGCGACAGTCGCCGGACGGAAGTCGGGAGAAGGAAATTGC 180
consensus_5116#2      ------------------------------------------------------------
consensus_5116#1      ------------------------------------------------------------
                                                                                  

consensus_5116#0      CTTCGCAGACTATGATCCGCAGGAGTTTGGTGGCCGTGCCGGCCGTACACTGTCATCCGA 240
consensus_5116#2      ------------------------------------------------------------
consensus_5116#1      ------------------------------------------------------------
                                                                                  

consensus_5116#0      TAGTGTCGACCTGTTGCCGTCGCTTGGCAATAGCATTGTAAATAGTAATAGCGAAGAACC 300
consensus_5116#2      ------------------------------------------------------------
consensus_5116#1      ----------------CCCCCGAGGTTATTCTTGACTACAAGCTTGATTGTTTCAAATCA 44
                                                                                  

consensus_5116#0      GAATGGCCAAGAGGGCGATCTGTCGAAAGAAGATGCCGAGGTTCCGTTCGGTTACGATAA 360
consensus_5116#2      ------------------------------------------------------------
consensus_5116#1      ACTAAGACTACTGCACCTCCCCGCAAGAACTATCCTTGTAAATAGGTAGCCGAAAACGGA 104
                                                                                  

consensus_5116#0      TAAGAAGAAAACAGTATTACCTCACCAGCAGCTAGAGCCACAGGCTGCACCGCTTCCAGC 420
consensus_5116#2      ------------------------------------------------------------
consensus_5116#1      CGAGCAGCGGGACGAGTGAAGCAAAAACGAAGCAGCGTAGGTGTGAGGTAAGATAGTGTA 164
                                                                                  

consensus_5116#0      GGACGATGATCCGGTGTTTCTCGAGTCGGATAACACAAACAGTCCACAAAGTTTTGCAGC 480
consensus_5116#2      ----------------------------------------------------------GA 2
consensus_5116#1      TGTGTTCCTATCGGAAATGGACTGCGAAAGACTAACTTTTGACTGATTTGTTAAACCAGA 224
                                                                                * 

consensus_5116#0      AACGGTA--GTAGACAGTATAGCACACGATTCGAAGCACCACCGTACC--GACGGTAGCA 536
consensus_5116#2      ATCGCCA--CGAG---GTTTAGCACACGATTCGAAGCAC-ACCGTACC--GACGGTAGCA 54
consensus_5116#1      ACTAACAGCTAAGCCACTTCAAAACCAGATCTCACAAAG-ATCGTGCAAAGATGGAAGAT 283
                      *     *    **    *  *  **  ***   *   *  * *** *   ** ** **  

consensus_5116#0      GTAGTGGCAACC---ATGCTCCAACAGCTGTCCATCGGGATGATGGTGT-GCCTTCGGTG 592
consensus_5116#2      GTAGTGGCAACC---ATGCCCCAACCGCTGTCCATCGGGATGATGGTGT-GCCTTCGGTG 110
consensus_5116#1      GAAGCTGTGCATTGAATGCACTGTTCGGGGCAC-TGTGGGTGAGAATGCCGCACGAGGCA 342
                      * **  *        **** *     *  *  * *  ** ***   **  **    **  

consensus_5116#0      AAGCGTGCCGATGTC---AGCC--------ATCCTCCATCCGATGGTTCCC-TTCATCAT 640
consensus_5116#2      AAGCGTGCCGATGTC---AGCC--------ATCCTCCATCCGATGGTTCCC-TTCATCAT 158
consensus_5116#1      AAGNGGAACGATTCTGAAAGCCGAAGGAAAATCCTTCCTCTGTTTGTTCTCGTTTGTTGC 402
                      *** *   ****      ****        ***** * ** * * **** * **  *   

consensus_5116#0      GCTCATCCCGCGCAGCAGCATCTGCATCGACCG--AAAACGAT--CGGACAGGATCTGGA 696
consensus_5116#2      GCTCATCCCGCGCAGCAGCATCTGCATCGACCG--AAAACGAT--CGGACAGGATCTGGA 214
consensus_5116#1      ATTT-TCAGGTAGCAAATTGTTAGCATCGATTGTCGTNACGAATGCGGTTTGGAGTGAAT 461
                        *  **  *      *   *  *******  *     ****   ***   ***      

consensus_5116#0      CGATCCATC-GTCCGGGATGTCATAGCATCA--CATTCTTGACTACAAGCTTGATTGTTT 753
consensus_5116#2      CGATCCATC-GTCCGGGATGTCATAGCATCA--TATTCTTGACTACAAGCTTGATTGTTT 271
consensus_5116#1      CAGTGCATCTGTATGCAATTGTACGAATGCAAGTATGTGTGTATGTGTGCGTAACTTTGT 521
                      *  * **** **  *  **   *      **   **   **  *    ** * * * * *

consensus_5116#0      CAA---AATCAACTAGGACTACTGCACCTCCCCGCAAGAACTATCCTTGTAAATAGGTAG 810
consensus_5116#2      CAA---AATCAACTAGGACTACTGCACCTCCCCGCAAGAACT------------------ 310
consensus_5116#1      CTAGCGAATGAATGTCGGAGACACAAAANACGCGCACTACTCTCTCTACTATATACAACC 581
                      * *   *** **    *   **   *    * ****  *                     

consensus_5116#0      CCGAAAACGGACGAGCAGCGGGACGAGTGAAGCAAAAACGAAGCAGCGTAGGTGTGAGGT 870
consensus_5116#2      ------------------------------------------------------------
consensus_5116#1      ATAAA------------------------------------------------------- 586
                                                                                  

consensus_5116#0      AAGATAGTGTATGTGTTCCTATCGGAAATGGACTGCGAAAGACTAACTTTTGACTGATTT 930
consensus_5116#2      ------------------------------------------------------------
consensus_5116#1      ------------------------------------------------------------
                                                                                  

consensus_5116#0      GTTAAACCAGAACTAACAGCTAAGCCACTTCAAAACCAGATCTCACAAAGATCGTGCAAA 990
consensus_5116#2      ------------------------------------------------------------
consensus_5116#1      ------------------------------------------------------------
                                                                                  

consensus_5116#0      GATGGAAGATGAAGCTGTGCATTGAATGCACTGTTCGGGGCACTGTGGGTGAGAATGCCG 1050
consensus_5116#2      ------------------------------------------------------------
consensus_5116#1      ------------------------------------------------------------
                                                                                  

consensus_5116#0      CACGAGGCAAAGGGAACGATTCTGAAAGCCGAAGGAAAATCCTTCCTCTGTTTTGTTCTC 1110
consensus_5116#2      ------------------------------------------------------------
consensus_5116#1      ------------------------------------------------------------
                                                                                  

consensus_5116#0      GTTTTGTTGCATTTTCAGGTAGCAAATTGTTAGCATCGATTGTCGTACGAATGCGGTTTG 1170
consensus_5116#2      ------------------------------------------------------------
consensus_5116#1      ------------------------------------------------------------
                                                                                  

consensus_5116#0      GAGTGAATCAGTGCATCTGTATGCAATTGTACGAATGCAAGTATGTGTGTATGTGTGCGT 1230
consensus_5116#2      ------------------------------------------------------------
consensus_5116#1      ------------------------------------------------------------
                                                                                  

consensus_5116#0      AATTTGTTAGGAATGAATGTTGGAGACACAAAA 1263
consensus_5116#2      ---------------------------------
consensus_5116#1      ---------------------------------
                                                       




Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner    (hubert.wassner@noos.fr)