cluster # 5118

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Anopheles gambiae
cluster # 5118 cluster # 5118 Sequences # 4 consensus # 3

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_5118#0 length = 636 sequences # 1

consensus_5118#1 length = 595 sequences # 2
consensus_5118#2 length = 123 sequences # 1

consensusID : consensus_5118#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 636
fasta sequence

                              [AATCGCCCGAGTTTAAGCTGACGGCTTCAAGTGGATGGTAATAAATCGTGTGGAACTGCTTGCTCAGGGCAAAACGGTACTGTTTGCGTTCGAGGAAGCGATCGGGTTCATGTTTTCGCCCACCGTACTGGACAAGGATGGCGTCAGTGCGGCCTGCCATCTGGCGACGATGGCGTGCTATCTGCGTGCCACCTCGAACCAATCGCTTGCCGACAAGCTGAACGAACTGTACGACATCTACGGCTTTCACTGTACGCTCGCTTCGTATCACTTCTGCTACGAGCCACCGGTGATGGAGCGTATCTTCAAGCGTATCCGCAACATGGGCCCGGCCTGGCNGATGCGCAACAGGATGAAAACTACCCCAGACGGTCGGTGCCGGTCGGTTTAAGATAGCGGACGTACGGGATCTGACCACCGGGTACGATTCTTCCCAACCGGCATGGCCTGTGCGGTGCTGCCGACGAGCAAGAGCTCGCAGATGATAACGTTCTCGTTCGAAAATGGTGCCGTCGTGACGCTGCGTACGAGCGGCACGAGCCGAAAATTAAGTATTACGCCGAAATGTGTGCACAGCCGGGGCAACGTGACTGGAACGGTTCCAAGGCAACGCTACGCGAGATGGTGGACTGCATC]

[+] EMBL AL693171             [AATCGCCCGAGTTTAAGCTGACGGCTTCAAGTGGATGGTAATAAATCGTGTGGAACTGCTTGCTCAGGGCAAAACGGTACTGTTTGCGTTCGAGGAAGCGATCGGGTTCATGTTTTCGCCCACCGTACTGGACAAGGATGGCGTCAGTGCGGCCTGCCATCTGGCGACGATGGCGTGCTATCTGCGTGCCACCTCGAACCAATCGCTTGCCGACAAGCTGAACGAACTGTACGACATCTACGGCTTTCACTGTACGCTCGCTTCGTATCACTTCTGCTACGAGCCACCGGTGATGGAGCGTATCTTCAAGCGTATCCGCAACATGGGCCCGGCCTGGCNGATGCGCAACAGGATGAAAACTACCCCAGACGGTCGGTGCCGGTCGGTTTAAGATAGCGGACGTACGGGATCTGACCACCGGGTACGATTCTTCCCAACCGGCATGGCCTGTGCGGTGCTGCCGACGAGCAAGAGCTCGCAGATGATAACGTTCTCGTTCGAAAATGGTGCCGTCGTGACGCTGCGTACGAGCGGCACGAGCCGAAAATTAAGTATTACGCCGAAATGTGTGCACAGCCGGGGCAACGTGACTGGAACGGTTCCAAGGCAACGCTACGCGAGATGGTGGACTGCATC]




>consensus_5118#0
AATCGCCCGAGTTTAAGCTGACGGCTTCAAGTGGATGGTAATAAATCGTGTGGAACTGCT
TGCTCAGGGCAAAACGGTACTGTTTGCGTTCGAGGAAGCGATCGGGTTCATGTTTTCGCC
CACCGTACTGGACAAGGATGGCGTCAGTGCGGCCTGCCATCTGGCGACGATGGCGTGCTA
TCTGCGTGCCACCTCGAACCAATCGCTTGCCGACAAGCTGAACGAACTGTACGACATCTA
CGGCTTTCACTGTACGCTCGCTTCGTATCACTTCTGCTACGAGCCACCGGTGATGGAGCG
TATCTTCAAGCGTATCCGCAACATGGGCCCGGCCTGGCNGATGCGCAACAGGATGAAAAC
TACCCCAGACGGTCGGTGCCGGTCGGTTTAAGATAGCGGACGTACGGGATCTGACCACCG
GGTACGATTCTTCCCAACCGGCATGGCCTGTGCGGTGCTGCCGACGAGCAAGAGCTCGCA
GATGATAACGTTCTCGTTCGAAAATGGTGCCGTCGTGACGCTGCGTACGAGCGGCACGAG
CCGAAAATTAAGTATTACGCCGAAATGTGTGCACAGCCGGGGCAACGTGACTGGAACGGT
TCCAAGGCAACGCTACGCGAGATGGTGGACTGCATC

consensusID : consensus_5118#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 595
fasta sequence

                              [ATTGCGAGCACGGTAAGCAGCAAGATGTTCCGCTCGATTGCGAACGTTGATGGACTGAACTTTATCGAAACGCTGACCGGCTTCAAGTGGATGGGTAATAAATCGGTGGAACTGCTTGCCCAGGGCAAAACGGTACTGTTTGCGTTCGAGGAAGCGATCGGGTTCATGTTTTCGCCCACCGTACTGGACAAGGATGGCGTCAGTGCGGCCTGCCATCTCGCGACGATGGCGTGCTATCTGCGTGCCACCTCGAACCAATCGCTTGCCGACAAGCTGAACGAACTGTACGACATCTATGGCTTTCACTGTACGCTCGCTTCGTATCACTTCTGCTACGAGCCACCGGTGATGGAGCGTATCTTCAAGCGTATCCGCAACATGGGCCCGGCCGGCGACGCGCAACAGGATGAAAACTACCCCCAGACGGTCGGTGCCGGTCGGTTTAAGATAGCGGACGTACGGGATCTGACCACCGGGTACGATTCTTCCCAACCGGATGGCCGTGCGGTGCTGCCGACGAGCAAGAGCTCGCAGATGATAACGTTCTCGTTCGAAAATGGTGCCGTCGTGACGCTGCGTACGAGCGGCACCGAGC]

[+] EMBL BX615466             [ATTGCGAGCACGGTAAGCAGCAAGATGTTCCGCTCGATTGCGAACGTTGATGGACTGAACTTTATCGAAACGCTGACCGGCTTCAAGTGGATGGGTAATAAATCGGTGGAACTGCTTGCCCAGGGCAAAACGGTACTGTTTGCGTTCGAGGAAGCGATCGGGTTCATGTTTTCGCCCACCGTACTGGACAAGGATGGCGTCAGTGCGGCCTGCCATCTCGCGACGATGGCGTGCTATCTGCGTGCCACCTCGAACCAATCGCTTGCCGACAAGCTGAACGAACTGTACGACATCTATGGCTTTCACTGTACGCTCGCTTCGTATCACTTCTGCTACGAGCCACCGGTGATGGAGCGTATCTTCAAGCGTATCCGCAACATGGGCCCGGCCGGCGACGCGCAACAGGATGAAAACTACCCCCAGACGGTCGGTGCCGGTCGGTTTAAGATAGCGGACGTACGGGATCTGACCACCGGGTACGATTCTTCCCAACCGGATGGCCGTGCGGTGCTGCCGACGAGCAAGAGCTCGCAGATGATAACGTTCTCGTTCGAAAATGGTGCCGTCGTGACGCTGCGTACGAGCGGCACCGAGC]
[+] EMBL BX616652             [                                                                                                                                                                                                                                        GCTATCTGCGTGCCACCTCGAACCAATCGCTTGCCGACAAGCTGAACGAACTGTACGACATCTACGGCTTTCACTGTACGCTCGCTTCGTATCACTTCTGCTACGAGCCACCGGTGATGGAGCGTATCTTCAAGCGTATCCGCAACATGGGCCCGGCCGGCGATGCGCAACAGGATGAAAACTACCCCCAGACGGTCGGTGCCGGTCGGTTTAAGATAGCGGACGTACGGGATCTGACCACCGGGTACGATTCTTCCCAACCGGATGGCCGTGCGGTGCTGCCGACGAGCAAGAGCTCGCAGATGATAACGTTCTCGTTCGA                                         ]




>consensus_5118#1
ATTGCGAGCACGGTAAGCAGCAAGATGTTCCGCTCGATTGCGAACGTTGATGGACTGAAC
TTTATCGAAACGCTGACCGGCTTCAAGTGGATGGGTAATAAATCGGTGGAACTGCTTGCC
CAGGGCAAAACGGTACTGTTTGCGTTCGAGGAAGCGATCGGGTTCATGTTTTCGCCCACC
GTACTGGACAAGGATGGCGTCAGTGCGGCCTGCCATCTCGCGACGATGGCGTGCTATCTG
CGTGCCACCTCGAACCAATCGCTTGCCGACAAGCTGAACGAACTGTACGACATCTATGGC
TTTCACTGTACGCTCGCTTCGTATCACTTCTGCTACGAGCCACCGGTGATGGAGCGTATC
TTCAAGCGTATCCGCAACATGGGCCCGGCCGGCGACGCGCAACAGGATGAAAACTACCCC
CAGACGGTCGGTGCCGGTCGGTTTAAGATAGCGGACGTACGGGATCTGACCACCGGGTAC
GATTCTTCCCAACCGGATGGCCGTGCGGTGCTGCCGACGAGCAAGAGCTCGCAGATGATA
ACGTTCTCGTTCGAAAATGGTGCCGTCGTGACGCTGCGTACGAGCGGCACCGAGC

consensusID : consensus_5118#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 123
fasta sequence

                              [GTATCACTTCGGCTACGAGCCACCGGTGATGGAGCGGATCTGCAAGCGTATCCGCAACAGGGGCCCGGCCGGCGAAGCGCAACAGGAAGAAAACTACCCCCAGACGGGCGGGGCCGGGCGGGT]

[+] EMBL BX615817             [GTATCACTTCGGCTACGAGCCACCGGTGATGGAGCGGATCTGCAAGCGTATCCGCAACAGGGGCCCGGCCGGCGAAGCGCAACAGGAAGAAAACTACCCCCAGACGGGCGGGGCCGGGCGGGT]




>consensus_5118#2
GTATCACTTCGGCTACGAGCCACCGGTGATGGAGCGGATCTGCAAGCGTATCCGCAACAG
GGGCCCGGCCGGCGAAGCGCAACAGGAAGAAAACTACCCCCAGACGGGCGGGGCCGGGCG
GGT

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_5118#1      ATTGCGAGCACGGTAAGCAGCAAGATGTTCCGCTCGATTGCGAACGTTGATGGACTGAAC 60
consensus_5118#2      ------------------------------------------------------------
consensus_5118#0      ------------------------------------------------AATCGCCCGAGT 12
                                                                                  

consensus_5118#1      TTTATCGAAACGCTGACCGGCTTCAAGTGGATGGGTAATAAATCG-GTGGAACTGCTTGC 119
consensus_5118#2      ------------------------------------------------------------
consensus_5118#0      TTAA-------GCTGAC-GGCTTCAAGTGGATGG-TAATAAATCGTGTGGAACTGCTTGC 63
                                                                                  

consensus_5118#1      CCAGGGCAAAACGGTACTGTTTGCGTTCGAGGAAGCGATCGGGTTCATGTTTTCGCCCAC 179
consensus_5118#2      ------------------------------------------------------------
consensus_5118#0      TCAGGGCAAAACGGTACTGTTTGCGTTCGAGGAAGCGATCGGGTTCATGTTTTCGCCCAC 123
                                                                                  

consensus_5118#1      CGTACTGGACAAGGATGGCGTCAGTGCGGCCTGCCATCTCGCGACGATGGCGTGCTATCT 239
consensus_5118#2      ------------------------------------------------------------
consensus_5118#0      CGTACTGGACAAGGATGGCGTCAGTGCGGCCTGCCATCTGGCGACGATGGCGTGCTATCT 183
                                                                                  

consensus_5118#1      GCGTGCCACCTCGAACCAATCGCTTGCCGACAAGCTGAACGAACTGTACGACATCTATGG 299
consensus_5118#2      ------------------------------------------------------------
consensus_5118#0      GCGTGCCACCTCGAACCAATCGCTTGCCGACAAGCTGAACGAACTGTACGACATCTACGG 243
                                                                                  

consensus_5118#1      CTTTCACTGTACGCTCGCTTCGTATCACTTCTGCTACGAGCCACCGGTGATGGAGCGTAT 359
consensus_5118#2      ---------------------GTATCACTTCGGCTACGAGCCACCGGTGATGGAGCGGAT 39
consensus_5118#0      CTTTCACTGTACGCTCGCTTCGTATCACTTCTGCTACGAGCCACCGGTGATGGAGCGTAT 303
                                           ********** ************************* **

consensus_5118#1      CTTCAAGCGTATCCGCAACATGGGCCCGGCCGG--CGACGCGCAACAGGATGAAAACTAC 417
consensus_5118#2      CTGCAAGCGTATCCGCAACAGGGGCCCGGCCGG--CGAAGCGCAACAGGAAGAAAACTAC 97
consensus_5118#0      CTTCAAGCGTATCCGCAACATGGGCCCGGCCTGGCNGATGCGCAACAGGATGAAAACTAC 363
                      ** ***************** ********** *   ** *********** *********

consensus_5118#1      CCCCAGACGGTCGGTGCCGGTCGGTTTAAGATAGCGGACGTACGGGATCTGACCACCGGG 477
consensus_5118#2      CCCCAGACGGGCGGGGCCGGGCGGGT---------------------------------- 123
consensus_5118#0      CCC-AGACGGTCGGTGCCGGTCGGTTTAAGATAGCGGACGTACGGGATCTGACCACCGGG 422
                      *** ****** *** ***** *** *                                  

consensus_5118#1      TACGATTCTTCCCAACCGG-ATGGCC-GTGCGGTGCTGCCGACGAGCAAGAGCTCGCAGA 535
consensus_5118#2      ------------------------------------------------------------
consensus_5118#0      TACGATTCTTCCCAACCGGCATGGCCTGTGCGGTGCTGCCGACGAGCAAGAGCTCGCAGA 482
                                                                                  

consensus_5118#1      TGATAACGTTCTCGTTCGAAAATGGTGCCGTCGTGACGCTGCGTACGAGCGGCACCGAGC 595
consensus_5118#2      ------------------------------------------------------------
consensus_5118#0      TGATAACGTTCTCGTTCGAAAATGGTGCCGTCGTGACGCTGCGTACGAGCGGCACGAGCC 542
                                                                                  

consensus_5118#1      ------------------------------------------------------------
consensus_5118#2      ------------------------------------------------------------
consensus_5118#0      GAAAATTAAGTATTACGCCGAAATGTGTGCACAGCCGGGGCAACGTGACTGGAACGGTTC 602
                                                                                  

consensus_5118#1      ----------------------------------
consensus_5118#2      ----------------------------------
consensus_5118#0      CAAGGCAACGCTACGCGAGATGGTGGACTGCATC 636