These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5119#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1220 fasta sequence [CACAATTGCCCCAGGTTTTGCAGGGTGGATCGATCGATCATCGATCGATTATGGTGGTGAACACAAGTCAGTNAGAACGCAAGCATAACCCATCTCGCTGTTGATCGTTGCAAACGTCGATCGATAACCGTTATCATGCCATGATTGCTGTCCCCGCACCCCTCCTCGCCTACCATCGCCATCCCTTCCCCTTGTGTGTTGTTGCCACATATGCCATTAGCCAATCAGTCGTNCCAGCGATCAGTCATTGTCAGCTCAGGCAGTTGGCAATTNCAGGCACGCATGCATGCCGTGGTGTGCACTCCCCGCGGTGTCATAGCATCCCTACNTCATGTCACAATTGTCCCAAACACCAANGTTCACGCATCGCATTCCTAACACCACACAGCACCACCAAAACACCCACACACACCGCATGCCATATGTCACGGCACGCGTCACAAGCAACACCACACACCACCACACGTCCAAGCCACCCACANTTTCCCCGCCCCAGCGCCACAGTGTTGTCCAAGGTCAAGCGCGCATTCCGNCGCCCAACAGGCACACAGCCCATCACCGACCCCAGCAGCCCNTCGCGGTCACACCCATAGGCGGTTNCCTTATNCTNTCATCTATNCCTCTATANTCCCCTAGGNCGCTTATTCATCAACCCATCTTAGGTCAGNATCCANNCACANGNTTAGCCAGCGAGCACGTACTCCATTCACCATTGGTGGCCACACCGCCAATCTNGGCACANACCTTCCCCGGCNANACCGGGTTCAATAGGTTAGGNGCACGGGGGCTTNNTAGGGTTACAACGGGGGTTAGNCACACCACAAGCCAATTCANCTACAAAACCAAACAATATACCCCCACATATACCGGAACCGGCTTCCGTANAATACANCCCGGACGTTTCACGGAGCTTACAACTAAGGNTACTGGGGACAACTGNAATACGCAAAGGGNAAATACCAACATTTNTCATAACACAGCATACCTTTCNTTCGACACTAACTACATCTAGACTTCCCCTGCACGGTTTTANACAACCCATTATTAAAGGGTACGTAGTCGAAAACAGNTACACACAACAAAACGGGGGCACAAAGCACATTANTTAACCGTTACCGGTCTNTTGCCACCTCTANGGTACGGGCCATGCGNGGCATTCTAATCATTAACCTCTCCACTAGGTACCGGGACACTTGACGCAACCATTCCNNGCAACGGAA] [+] EMBL AL693197 [CACAATTGCCCCAGGTTTTGCAGGGTGGATCGATCGATCATCGATCGATTATGGTGGTGAACACAAGTCAGTNAGAACGCAAGCATAACCCATCTCGCTGTTGATCGTTGCAAACGTCGATCGATAACCGTTATCATGCCATGATTGCTGTCCCCGCACCCCTCCTCGCCTACCATCGCCATCCCTTCCCCTTGTGTGTTGTTGCCACATATGCCATTAGCCAATCAGTCGTNCCAGCGATCAGTCATTGTCAGCTCAGGCAGTTGGCAATTNCAGGCACGCATGCATGCCGTGGTGTGCACTCCCCGCGGTGTCATAGCATCCCTACNTCATGTCACAATTGTCCCAAACACCAANGTTCACGCATCGCATTCCTAACACCACACAGCACCACCAAAACACCCACACACACCGCATGCCATATGTCACGGCACGCGTCACAAGCAACACCACACACCACCACACGTCCAAGCCACCCACANTTTCCCCGCCCCAGCGCCACAGTGTTGTCCAAGGTCAAGCGCGCATTCCGNCGCCCAACAGGCACACAGCCCATCACCGACCCCAGCAGCCCNTCGCGGTCACACCCATAGGCGGTTNCCTTATNCTNTCATCTATNCCTCTATANTCCCCTAGGNCGCTTATTCATCAACCCATCTTAGGTCAGNATCCANNCACANGNTTAGCCAGCGAGCACGTACTCCATTCACCATTGGTGGCCACACCGCCAATCTNGGCACANACCTTCCCCGGCNANACCGGGTTCAATAGGTTAGGNGCACGGGGGCTTNNTAGGGTTACAACGGGGGTTAGNCACACCACAAGCCAATTCANCTACAAAACCAAACAATATACCCCCACATATACCGGAACCGGCTTCCGTANAATACANCCCGGACGTTTCACGGAGCTTACAACTAAGGNTACTGGGGACAACTGNAATACGCAAAGGGNAAATACCAACATTTNTCATAACACAGCATACCTTTCNTTCGACACTAACTACATCTAGACTTCCCCTGCACGGTTTTANACAACCCATTATTAAAGGGTACGTAGTCGAAAACAGNTACACACAACAAAACGGGGGCACAAAGCACATTANTTAACCGTTACCGGTCTNTTGCCACCTCTANGGTACGGGCCATGCGNGGCATTCTAATCATTAACCTCTCCACTAGGTACCGGGACACTTGACGCAACCATTCCNNGCAACGGAA] consensusID : consensus_5119#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1059 fasta sequence [CCGCCCACGCGTCCGCCCACGCGTCCGTAAAAACATATACTTGGCGGAGTTTTTGATTCTGATCCGCAGTTCATCCGAGCTACAGCCGCTGCTCGAATCGGTACAGAAGGACTCATCCGGACAGTCGAACAACAATATCGATGGGCGGGATACGTCGATGGATCAAAGCTAGGTGGAAAGGACAAAGAAGCGCAAGGTGGATGATGATGATGATGATGATGGTGGTGAACACAAGTAGTCAGAACGCAAGCATAACCCATCTCGCTGTTGATCGTTGAAACGTCGATCGATAACCGTTTCATGCCATGATTGCTGTCCCCGCACCCCTCCTCGCCTACCATCGCCATCCTTCCCTTGTGGTGTGCAATTGCATGCACAGTCGTCCCGCGTAGTATGTAGTCGGAGTGGAATTAGACGATGAT---GTCGTGGACTCCCCCGGGATGATCCTCTATGTAATGTCCAACACAACGTACGATCGATCTTACAAAACACAAACAAAAACGATGATGTAGGACGGTAAGAAACAAACACACAGTAAGCAGAATTTCCGCCAGCGAAGGTGTAAGTAGGGATTCGGCAAGGAAAGCATACGACCAGGCATCGGTAAAATGCGTTCTGTTTTTCTTTTCCGGCGTTATACATTGTTTCAAAAGTGAGGCTTATAATGTGAACGAATGAAACTCCGAACGTATGTGGAGGGTTTGTAAGGGTGAAAAGATACTAACAAATTCCAATTCGAGGTCGATACCGCTTCCCGTTAATAGTTGGTTCTTGTTTTGTATCACTTTTTAAGTCTTTTTTTATTTTTCTCCTGCGTTACACATTTTGTTTTTACATAAACAACGGCAAACAATATACGTACGTCTGCTCTTTGTCGGATGCGGATTTATATACTCATGGTCGGAACTGAGCAAATTCCGAAACGACATCCCACAACAACATCATCTCCATCCGAAGTAGCGATCACCAATGGCGGCGCGAGATCCAGTACGAACGGTACGAACAGAACCGATTCTGATTGACGGCTCGAGCACGAGTCCGACTATTTGAAGCGAGAAT] [+] EMBL BM629104 [CCGCCCACGCGTCCGCCCACGCGTCCGTAAAAACATATACTTGGCGGAGTTTTTGATTCTGATCCGCAGTTCATCCGAGCTACAGCCGCTGCTCGAATCGGTACAGAAGGACTCATCCGGACAGTCGAACAACAATATCGATGGGCGGGATACGTCGATGGATCAAAGCTAGGTGGAAAGGACAAAGAAGCGCAAGGTGGATGATGATGATGATGATGATGGTGGTGAACACAAGTAGTCAGAACGCAAGCATAACCCATCTCGCTGTTGATCGTTGAAACGTCGATCGATAACCGTTTCATGCCATGATTGCTGTCCCCGCACCCCTCCTCGCCTACCATCGCCATCCTTCCCTTGTGGTGTGCAATTGCATGCACAGTCGTCCCGCGTAGTATGTAGTCGGAGTGGAATTAGACGATGAT GTCGTGGACTCCCCCGGGATGATCCTCTATGTAATGTCCAACACAACGTACGATCGATCTTACAAAACACAAACAAAAACGATGATGTAGGACGGTAAGAAACAAACACACAGTAAGCAGAATTTCCGCCAGCGAAGGTGTAAGTAGGGATTCGGCAAGGAAAGCATACGACCAGGCATCGGTAAAATGCGTTCTGTTTTTCTTTTCCGGCGTTATACATTGTTTCAAAAGTGAGGCTTATAATGTG ] [+] EMBL BM609516 [ ccGCACAGTCGTCCCGCGTAGTATATAGTCGGAGTGGAATTAGACGATGATGCCGTGGTGGACTCCCCCGGGATGATCCTCTATGTAATGTCCAACACAACGTACGATCGATCTAACAAAACACAAACAAAAACGATGATGTAGGACGGTAAGAAACATACACACAGTAAGCAGAATTTCCGCCAGCGAAGGTGTAAGTAGGGATTCGGCAAGGAAAGCATACGACCAGGCATCGGTAAAATGCGTTCTGTTTTTCTTTTCCGGCGTTATACATTGTTTCAAAAGTGAGGCTTATAATGTGAACGAATGAAACTCCGAACGTATGTGGAGGGTTTGTAAGGGTGAAAAGATACTAACAAATTCCAATTCGAGGTCGATACCGCTTCCCGTTAATAGTTGGTTCTTGTTTTGTATCACTTTTTAAGTCTTTTTTTATTTTTCTCCTGCGTTACACATTTTGTTTTTACATAAACAACGGCAAACAATATACGTACGTCTGCTCTTTGTCGGATGCGGATTTATATACTCATGGTCGGAACTGAGCAAATTCCGAAACGACATCCCACAACAACATCATCTCCATCCGAAGTAGCGATCACCAATGGCGGCGCGAGATCCAGTACGAACGGTACGAACAGAACCGATTCTGATTGACGGCTCGAGCACGAGTCCGACTATTTGAAGCGAGAAT] consensusID : consensus_5119#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 708 fasta sequence [CACTGCTGCAAATTCCCAAGGCTGATAAAAACATATACTTGGCGGAGTTTTTGATTCTGATCCGCAGTTCATCCGAGCTACAGCCGCTGCTCGAATCGGTACAGAAGGACTCATCCGGACAGTCGAACAACAATATCGATGGGCGGGATACGTCGATGGATCAAAGCTAGGTGGAAAGGACAAAGAAGCGCAAGGTGGATGATGATGATGATGATGATGGTGGTGAACACAAGTAGTCAGAACGCAAGCATAACCCATCTCGCTGTTGATCGTTGAAACGTCGATCGATAACCGTTTCATGCCATGATTGCTGTCCCCGCACCCCTCCTCGCCTACCATCGCCATCCTTCCCTTGTGGTGTGCAATTGCATGCACAGTCGTCCCGCGTAGTATGTAGTCGGAGTGGAATTAGACGATGATGCCGTGGTGGACTCCCGGGGATGATCCTCTATGTAATGTCCAACACAACGTACGATCGATCTAACAAAACACAAACAAAAACGATGATGTAGGACGGTAAGAAACAAACACACAGTAAGCAGAATTTCCGCCAGCGAAGGTGTAAGTAGGGATTCGGCAAGGAAAGCATACGACCAGGCATCGGTAAAATGCGTTCTTTTTTTCTTTTCCGGCGTTATACATTGTTTCAAAAGTGAGGCTTATAATGTGAACGATTGAAACTCCGAACGTATGTGGAGGGTTTGTAAG] [+] EMBL BX623993 [CACTGCTGCAAATTCCCAAGGCTGATAAAAACATATACTTGGCGGAGTTTTTGATTCTGATCCGCAGTTCATCCGAGCTACAGCCGCTGCTCGAATCGGTACAGAAGGACTCATCCGGACAGTCGAACAACAATATCGATGGGCGGGATACGTCGATGGATCAAAGCTAGGTGGAAAGGACAAAGAAGCGCAAGGTGGATGATGATGATGATGATGATGGTGGTGAACACAAGTAGTCAGAACGCAAGCATAACCCATCTCGCTGTTGATCGTTGAAACGTCGATCGATAACCGTTTCATGCCATGATTGCTGTCCCCGCACCCCTCCTCGCCTACCATCGCCATCCTTCCCTTGTGGTGTGCAATTGCATGCACAGTCGTCCCGCGTAGTATGTAGTCGGAGTGGAATTAGACGATGATGCCGTGGTGGACTCCCGGGGATGATCCTCTATGTAATGTCCAACACAACGTACGATCGATCTAACAAAACACAAACAAAAACGATGATGTAGGACGGTAAGAAACAAACACACAGTAAGCAGAATTTCCGCCAGCGAAGGTGTAAGTAGGGATTCGGCAAGGAAAGCATACGACCAGGCATCGGTAAAATGCGTTCTTTTTTTCTTTTCCGGCGTTATACATTGTTTCAAAAGTGAGGCTTATAATGTGAACGATTGAAACTCCGAACGTATGTGGAGGGTTTGTAAG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_5119#1 ------------------------------------------------------------ consensus_5119#2 ------------------------------------------------------------ consensus_5119#0 CACAATTGCCCCAGGTTTTGCAGGGTGGATCGATCGATCATCGATCGATTATGGTGGTGA 60 consensus_5119#1 ----------------------------------CCGCCCACGCGTCCGCCCACGCGTCC 26 consensus_5119#2 -----------------------------------CACTGCTGCAAATTCCCAAG-GCTG 24 consensus_5119#0 ACACAAGTCAGTNAGAACGCAAGCATAACCCATCTCGCTGTTG-ATCGTTGCAAACGTCG 119 * * * ** * consensus_5119#1 GT--AAAAACATATACTTGGCGGAGTTTTTGATTCTGATCCGCAGTTCATCCGA----GC 80 consensus_5119#2 AT--AAAAACATATACTTGGCGGAGTTTTTGATTCTGATCCGCAGTTCATCCGA----GC 78 consensus_5119#0 ATCGATAACCGTTATCATGCCATGATTGCTGTCCCCGCACCCCTCCTCGCCTACCATCGC 179 * * ** * * * ** * ** ** * * ** * ** * ** consensus_5119#1 TACAGCCGCTGCTCGAAT-----CGGTACAGAAGGACTCATCCGGACAGTCGAAC-AACA 134 consensus_5119#2 TACAGCCGCTGCTCGAAT-----CGGTACAGAAGGACTCATCCGGACAGTCGAAC-AACA 132 consensus_5119#0 CATCCCTTCCCCTTGTGTGTTGTTGCCACATATGCCATTAGCCAATCAGTCGTNCCAGCG 239 * * * ** * * * *** * * * * ** ****** * * * consensus_5119#1 AT-ATCGATGGGCGGGATACGTCGATGG--ATCAAAGCTAGGTGGAAAGGACAAAGAAGC 191 consensus_5119#2 AT-ATCGATGGGCGGGATACGTCGATGG--ATCAAAGCTAGGTGGAAAGGACAAAGAAGC 189 consensus_5119#0 ATCAGTCATTGTCAGCTCAGGCAGTTGGCAATTNCAGGCACGCATGCATGCCGTGGT-GT 298 ** * ** * * * * * * *** ** ** * * * * * * * consensus_5119#1 GCAAGGTGGATGATGATGATGATGATGATGGTGGTGAACACAAGTAGTCAGAACGCAAGC 251 consensus_5119#2 GCAAGGTGGATGATGATGATGATGATGATGGTGGTGAACACAAGTAGTCAGAACGCAAGC 249 consensus_5119#0 GCACTCCCCGCGGTG-TCATAGCATCCCTACNTCATGTCACAATTGTCCCAAACACCAAN 357 *** * ** * ** * ***** * * *** * * consensus_5119#1 ATA-ACCCATCTCGCTGTTGAT------------CGTTGAAACGTCGATCGATAAC---C 295 consensus_5119#2 ATA-ACCCATCTCGCTGTTGAT------------CGTTGAAACGTCGATCGATAAC---C 293 consensus_5119#0 GTTCACGCATCGCATTCCTAACACCACACAGCACCACCAAAACACCCACACACACCGCAT 417 * ** **** * * * * * **** * * * * * consensus_5119#1 GTTTCATGCCATGATTGCTGTCCC-----------CGCACCCCTCCTCGCCTA--CCATC 342 consensus_5119#2 GTTTCATGCCATGATTGCTGTCCC-----------CGCACCCCTCCTCGCCTA--CCATC 340 consensus_5119#0 GCCATATGTCACGGCACGCGTCACAAGCAACACCACACACCACCACACGTCCAAGCCACC 477 * *** ** * *** * * **** * * ** * * *** * consensus_5119#1 GCCATCCTTCCC-TTGTGGTGT-GCAATTGCATGCACAGTCGTCCCGCGTAGTATGTAGT 400 consensus_5119#2 GCCATCCTTCCC-TTGTGGTGT-GCAATTGCATGCACAGTCGTCCCGCGTAGTATGTAGT 398 consensus_5119#0 CACANTTTCCCCGCCCCAGCGCCACAGTGTTGTCCAAGGTCAAGC-GCGCATTCCGNCGC 536 ** * *** * * ** * * ** *** * *** * * * * consensus_5119#1 CGGAGTGGAAT-TAGACGATGAT--GTCGTG--GACTCCCCCGGGATGATCCTCTATGTA 455 consensus_5119#2 CGGAGTGGAAT-TAGACGATGAT--GCCGTGGTGGACTCCCGGGGATGATCCTCTATGTA 455 consensus_5119#0 CCAACAGGCACACAGCCCATCACCGACCCCAGCAGCCCNTCGCGGTCACACCCATAGGCG 596 * * ** * ** * ** * * * ** ** ** * consensus_5119#1 ATGTCCA-ACACAACGTACGATC-------GATCTTACAAAACACAAACAAAAACGATGA 507 consensus_5119#2 ATGTCCA-ACACAACGTACGATC-------GATCTAACAAAACACAAACAAAAACGATGA 507 consensus_5119#0 GTTNCCTTATNCTNTCATCTATNCCTCTATANTCCCCTAGGNCGCTTATTCATCAACCCA 656 * ** * * * ** ** * * * * * * consensus_5119#1 TGT-AGGACGGTAAG-AAACAAACACACAGTAAGC-AGAATTTCCGCCAGCGAAGGTGTA 564 consensus_5119#2 TGT-AGGACGGTAAG-AAACAAACACACAGTAAGC-AGAATTTCCGCCAGCGAAGGTGTA 564 consensus_5119#0 TCTTAGGTCAGNATCCANNCACANGNTTAGCCAGCGAGCACGTACTCCATTCAC--CATT 714 * * *** * * * * ** * ** *** ** * * * *** * * consensus_5119#1 AGTAGGGAT-TCGGCAAGGAAAGCATACGACCAGGCATCGGTAAAATGCGTTCTGT---T 620 consensus_5119#2 AGTAGGGAT-TCGGCAAGGAAAGCATACGACCAGGCATCGGTAAAATGCGTTCTTT---T 620 consensus_5119#0 GGTGGCCACACCGCCAATCTNGGCACAN-ACCTTCCCCGGCNANACCGGGTTCAATAGGT 773 ** * * ** *** *** * *** * * * * * **** * * consensus_5119#1 TTTCTTTTCCGGCGTTATACATTGTTTCAAAAGTGAG-GCTTATAATGTGAACGAATGAA 679 consensus_5119#2 TTTCTTTTCCGGCGTTATACATTGTTTCAAAAGTGAG-GCTTATAATGTGAACGATTGAA 679 consensus_5119#0 TAGGNGCACGGGGGCTTNNTAGGGTTACAACGGGGGTTAGNCACACCACAAGCCAATTCA 833 * * ** * * * *** *** * * * * * * * * * consensus_5119#1 ACTCCGAACGTATGTGGAGGGTTT----GTAAGGGTGAAAAGATACTAACAAATTCCAAT 735 consensus_5119#2 ACTCCGAACGTATGTGGAGGGTTT----GTAAG--------------------------- 708 consensus_5119#0 NCTACAAAACCAAACAATATACCCCCACATATACCGGAACCGGCTTCCGTANAATACANC 893 ** * ** * ** consensus_5119#1 TCGA--GGTCGATACCGCTTCCCGTTAATAGTTGGTTCTTGTTTTGTATCACTTTTTAAG 793 consensus_5119#2 ------------------------------------------------------------ consensus_5119#0 CCGGACGTTTCACGGAGCTTACAACTAAGGNTACTGGGGACAACTGNAATACGCAAAGGG 953 consensus_5119#1 TCTTTTTTTATTTTTCTCCTGCGTTACACATTTTGTTTTTACATAAACAACGGCAAACAA 853 consensus_5119#2 ------------------------------------------------------------ consensus_5119#0 NAAATACCAACATTTNTCATAACACA-GCATACCTTTCNTTCGACACTAACTACATCTAG 1012 consensus_5119#1 TATACGTACGTCTGCTCTTTGTCGGATGCGGATTTATATACTCATGGTCGGAACTGAGCA 913 consensus_5119#2 ------------------------------------------------------------ consensus_5119#0 ACTTCCCCTGCACGGTTTTANACAACCCATTATTAAAGGGTACGTAGTCGAAAACAGNTA 1072 consensus_5119#1 AATTCCGAAACGACATCCCACAACA-ACATCATCTCCATCCGAAGTAGCGATCACCAATG 972 consensus_5119#2 ------------------------------------------------------------ consensus_5119#0 CACACAACAAAACGGGGGCACAAAGCACATTANTTAACCGTTACCGGTCTNTTGCCACCT 1132 consensus_5119#1 GCGGCGCGAGATCCAGTACGAACGGTACGAACAGAACCGATTCTGATTGACGGCTCGAGC 1032 consensus_5119#2 ------------------------------------------------------------ consensus_5119#0 CTANGGTACGGGCCATGCGNGGCATTCTAATCATTAACCTCTCCACTAGGTACCGGGACA 1192 consensus_5119#1 ACGAGTCCGACTATTTGAAGCGAGAAT- 1059 consensus_5119#2 ---------------------------- consensus_5119#0 CTTGACGCAACCATTCCNNGCAACGGAA 1220 |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||