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Anopheles gambiae
cluster # 5120 cluster # 5120       Sequences # 4       consensus # 3


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_5120#0 length = 868 sequences # 1  
consensus_5120#1 length = 704 sequences # 1  
consensus_5120#2 length = 633 sequences # 2  

consensusID : consensus_5120#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 868
fasta sequence
                              [CCCGAGGTTATAAAGAAATAGCCAGTGCCATCAAAAAGCTGCTCGATGCGGTTAACGAAGTGGTCGGCTTTATACCGGGCTCGTCCGGCAAACAGGCGGTGGAGCAGCGGAAGAAGGAGTTTGTCAAGTATTCCAAAAAGTTTAGCACCACCCTAAAGGAGTACTTTAAGGAGGGAGAGGCTAATGCCGTATTCGTAAGTGCCCTGTACCTGATACACCAAACGAACTCAGATTATGATAACGGTGAAGAATAAGTGCGAGTAGTGCTGATGACGGTCGTCAACAGGGCTGGGAAGCAAAATCATGAGTATTTAACTGATAGAGAAGTTTCGTTACTTATGTANTTCTCTTTANTTGTATTGTCNATTCTGTTNACAGTCTATTTCCCCAACGGGCGCCGTTTCACCTCCGACTTCCGTGCGTCCTTTANNACTGCATCAGAATCAGTACTACACAGAACAGGGTAGGGCCTGGCTTCTACGCGCATCGTGTTCCCCCATTTCAATATGCGGCACGTTCTCTNAAGCACTAGCNAGGCAAGGTCGCAACGCAAGATAGCAACTGGCGCTGNCAGTAGGANACATTGATACCGCACNCTACTCANACCCCTCTACCCTGCTAACACTAGNGCAGGGCAGCGAAAACCAGGCCCAACCTAACCCAAGAGTTACTACTTTGCNCACTGCGTTGCCAACCCGGTCAAACTGNTCGCCTAAACCGCCANCCCACGGCCAACACGCAACTTTACTACCCTAGCACTGGCACCANACGACTCTACGCTGCNNACCGCGAATGGGNAACGGACACAGAATTNACGNCTCTACTNCATCACCCCCCCCACACTACTCACCTCACCCTCNCNNTCCCC]

[+] EMBL AL695367             [CCCGAGGTTATAAAGAAATAGCCAGTGCCATCAAAAAGCTGCTCGATGCGGTTAACGAAGTGGTCGGCTTTATACCGGGCTCGTCCGGCAAACAGGCGGTGGAGCAGCGGAAGAAGGAGTTTGTCAAGTATTCCAAAAAGTTTAGCACCACCCTAAAGGAGTACTTTAAGGAGGGAGAGGCTAATGCCGTATTCGTAAGTGCCCTGTACCTGATACACCAAACGAACTCAGATTATGATAACGGTGAAGAATAAGTGCGAGTAGTGCTGATGACGGTCGTCAACAGGGCTGGGAAGCAAAATCATGAGTATTTAACTGATAGAGAAGTTTCGTTACTTATGTANTTCTCTTTANTTGTATTGTCNATTCTGTTNACAGTCTATTTCCCCAACGGGCGCCGTTTCACCTCCGACTTCCGTGCGTCCTTTANNACTGCATCAGAATCAGTACTACACAGAACAGGGTAGGGCCTGGCTTCTACGCGCATCGTGTTCCCCCATTTCAATATGCGGCACGTTCTCTNAAGCACTAGCNAGGCAAGGTCGCAACGCAAGATAGCAACTGGCGCTGNCAGTAGGANACATTGATACCGCACNCTACTCANACCCCTCTACCCTGCTAACACTAGNGCAGGGCAGCGAAAACCAGGCCCAACCTAACCCAAGAGTTACTACTTTGCNCACTGCGTTGCCAACCCGGTCAAACTGNTCGCCTAAACCGCCANCCCACGGCCAACACGCAACTTTACTACCCTAGCACTGGCACCANACGACTCTACGCTGCNNACCGCGAATGGGNAACGGACACAGAATTNACGNCTCTACTNCATCACCCCCCCCACACTACTCACCTCACCCTCNCNNTCCCC]


>consensus_5120#0 CCCGAGGTTATAAAGAAATAGCCAGTGCCATCAAAAAGCTGCTCGATGCGGTTAACGAAG TGGTCGGCTTTATACCGGGCTCGTCCGGCAAACAGGCGGTGGAGCAGCGGAAGAAGGAGT TTGTCAAGTATTCCAAAAAGTTTAGCACCACCCTAAAGGAGTACTTTAAGGAGGGAGAGG CTAATGCCGTATTCGTAAGTGCCCTGTACCTGATACACCAAACGAACTCAGATTATGATA ACGGTGAAGAATAAGTGCGAGTAGTGCTGATGACGGTCGTCAACAGGGCTGGGAAGCAAA ATCATGAGTATTTAACTGATAGAGAAGTTTCGTTACTTATGTANTTCTCTTTANTTGTAT TGTCNATTCTGTTNACAGTCTATTTCCCCAACGGGCGCCGTTTCACCTCCGACTTCCGTG CGTCCTTTANNACTGCATCAGAATCAGTACTACACAGAACAGGGTAGGGCCTGGCTTCTA CGCGCATCGTGTTCCCCCATTTCAATATGCGGCACGTTCTCTNAAGCACTAGCNAGGCAA GGTCGCAACGCAAGATAGCAACTGGCGCTGNCAGTAGGANACATTGATACCGCACNCTAC TCANACCCCTCTACCCTGCTAACACTAGNGCAGGGCAGCGAAAACCAGGCCCAACCTAAC CCAAGAGTTACTACTTTGCNCACTGCGTTGCCAACCCGGTCAAACTGNTCGCCTAAACCG CCANCCCACGGCCAACACGCAACTTTACTACCCTAGCACTGGCACCANACGACTCTACGC TGCNNACCGCGAATGGGNAACGGACACAGAATTNACGNCTCTACTNCATCACCCCCCCCA CACTACTCACCTCACCCTCNCNNTCCCC



consensusID : consensus_5120#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 704
fasta sequence
                              [GAATTGCCGAGGTTAAACGTATTTTCCCGGGCCCCGGCATATATTTATACTGCATATTATACATAAATATGTTATTGCCTGTATGCATTTTGTCTCATTCCAAGGTCCTAACAACGCCAAACCAAATGGTGCTACTGGATAAAAGAAAAAAATCCCCAATCCGTTTCCCTCCAGGGACAAAGTGTGTGTTACAAGGCAGAACGAAGAGTACCTTAGTAGACGGTTTCCACAGCAAAACCCGTTGAAGCGCGACACACTTTNTGCCAATCGTAATTNTTGGCATTCATTTCGACACAATTGCGGCAATAAAACGCTCCAGTGCCAAGCGTGCCTATTTACTACTTGTGTGTCGTAGTGTAGTAGTAGTGTGTGTAGTAAGGGCGATAGCTTAAGGGTGCTTCTTACTATCACNCCATCACCACGGTTTCAATTCCCTGGGTAANGGTGCGTGCNGGAGTGTGTAGTGTGTCAGGGGATTCNCGGGNNGGCCCCTCNANAACAAACNCACAACACTCCACCGTANNACACACGGATTCATACTAATTAAACAAACCACCATTAACGACTCTAGGGCTAAACGGTCAATTTCGGGCTACTCGGGGCACGCTAGNCNAAATTGGCACGGCGAAACAGAGGATTACANACACGTAATTNATTTGCCACAACAAANCCACCTGCTTAAAGACANCAACACAACCCGGGAA]

[+] EMBL AL693263             [GAATTGCCGAGGTTAAACGTATTTTCCCGGGCCCCGGCATATATTTATACTGCATATTATACATAAATATGTTATTGCCTGTATGCATTTTGTCTCATTCCAAGGTCCTAACAACGCCAAACCAAATGGTGCTACTGGATAAAAGAAAAAAATCCCCAATCCGTTTCCCTCCAGGGACAAAGTGTGTGTTACAAGGCAGAACGAAGAGTACCTTAGTAGACGGTTTCCACAGCAAAACCCGTTGAAGCGCGACACACTTTNTGCCAATCGTAATTNTTGGCATTCATTTCGACACAATTGCGGCAATAAAACGCTCCAGTGCCAAGCGTGCCTATTTACTACTTGTGTGTCGTAGTGTAGTAGTAGTGTGTGTAGTAAGGGCGATAGCTTAAGGGTGCTTCTTACTATCACNCCATCACCACGGTTTCAATTCCCTGGGTAANGGTGCGTGCNGGAGTGTGTAGTGTGTCAGGGGATTCNCGGGNNGGCCCCTCNANAACAAACNCACAACACTCCACCGTANNACACACGGATTCATACTAATTAAACAAACCACCATTAACGACTCTAGGGCTAAACGGTCAATTTCGGGCTACTCGGGGCACGCTAGNCNAAATTGGCACGGCGAAACAGAGGATTACANACACGTAATTNATTTGCCACAACAAANCCACCTGCTTAAAGACANCAACACAACCCGGGAA]


>consensus_5120#1 GAATTGCCGAGGTTAAACGTATTTTCCCGGGCCCCGGCATATATTTATACTGCATATTAT ACATAAATATGTTATTGCCTGTATGCATTTTGTCTCATTCCAAGGTCCTAACAACGCCAA ACCAAATGGTGCTACTGGATAAAAGAAAAAAATCCCCAATCCGTTTCCCTCCAGGGACAA AGTGTGTGTTACAAGGCAGAACGAAGAGTACCTTAGTAGACGGTTTCCACAGCAAAACCC GTTGAAGCGCGACACACTTTNTGCCAATCGTAATTNTTGGCATTCATTTCGACACAATTG CGGCAATAAAACGCTCCAGTGCCAAGCGTGCCTATTTACTACTTGTGTGTCGTAGTGTAG TAGTAGTGTGTGTAGTAAGGGCGATAGCTTAAGGGTGCTTCTTACTATCACNCCATCACC ACGGTTTCAATTCCCTGGGTAANGGTGCGTGCNGGAGTGTGTAGTGTGTCAGGGGATTCN CGGGNNGGCCCCTCNANAACAAACNCACAACACTCCACCGTANNACACACGGATTCATAC TAATTAAACAAACCACCATTAACGACTCTAGGGCTAAACGGTCAATTTCGGGCTACTCGG GGCACGCTAGNCNAAATTGGCACGGCGAAACAGAGGATTACANACACGTAATTNATTTGC CACAACAAANCCACCTGCTTAAAGACANCAACACAACCCGGGAA



consensusID : consensus_5120#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 633
fasta sequence
                              [GGAGCAGCGGAAGAAGGAGTTTGTCAAGTATTCCAAAAAGTTTAGCACCACCCTAAAGGAGTACTTTAAGGAGGGAGAGGCTAATGCCGTATTCCTTTATTCCATTCCGCCAGCATTCACTAACTTTTACTACGAAAGAATGGAGTATTATTAATATTATAGTTACTATTACACCACGGCTACTTGGCGCGCTGCCCAGGCAGAATATCAGTTTTCCCCCCCAGACCAAGCTGTTTAAATGACGTGCAACATTCTGGCCCTTAGGCGGTGCTAGAGCGTTTAAAAACAAAACGTATTTTCCCGGGCCCCCGGCATATATTTATACGCATATTATACATAAATATGTTATTGCCTGTATGCATTTTGTCTCATTCCAAGGTCCTAACAACGCCAAACCAAATGGTGCTACTGGATAAAAGAAAAAAATCCCCAATCCGTTTCCCTCCAGGGACAAAGTGTGTGTTACAAGGAGAAGAAGAGTACCTTAGTAGCGGTTTCCACGCAAAACCCGTTGAAGCGCGACACACTTTTTGCCAATCGTAATTTTGGCATCATTTCGAAAATTGTTACGAATATTTACATTTTCTGTAGTGGAGGGAGGAACAGCCACTAACAGGTATATTGGATGGTGCA]

[+] EMBL BX612634             [GGAGCAGCGGAAGAAGGAGTTTGTCAAGTATTCCAAAAAGTTTAGCACCACCCTAAAGGAGTACTTTAAGGAGGGAGAGGCTAATGCCGTATTCCTTTATTCCATTCCGCCAGCATTCACTAACTTTTACTACGAAAGAATGGAGTATTATTAATATTATAGTTACTATTACACCACGGCTACTTGGCGCGCTGCCCAGGCAGAATATCAGTTTTCCCCCCCAGACCAAGCTGTTTAAATGACGTGCAACATTCTGGCCCTTAGGCGGTGCTAGAGCGTTTAAAAACAAAACGTATTTTCCCGGGCCCCCGGCATATATTTATACGCATATTATACATAAATATGTTATTGCCTGTATGCATTTTGTCTCATTCCAAGGTCCTAACAACGCCAAACCAAATGGTGCTACTGGATAAAAGAAAAAAATCCCCAATCCGTTTCCCTCCAGGGACAAAGTGTGTGTTACAAGGAGAAGAAGAGTACCTTAGTAGCGGTTTCCACGCAAAACCCGTTGAAGCGCGACACACTTTTTGCCAATCGTAATTTTGGCATCATTTCGAAAATTGTTACGAATATTTACATTTTCTGTAGTGGAGGGAGGAACAGCCACTAACAGGTATATTGGATGGTGCA]
[+] EMBL BX602833             [                                                                                      cttTATTCCTTTATTCCATTCCGCCAGCATTCACTAACTTTTACTACGAAAGAATGGAGTATTATTAATATTATAGTTACTATTACACCACGGCTACTTGGCGCGCTGCCCAGGCAGAATATCAGTTTTCCCCCCCAGACCAAGCTGTGTAAATGACGTGCAACATTCTGGCCCTTAGGCGGTGCTAGAGCGTTTAAAAACAAAACGTATTTTCCCGGGCCCCCGGCATATATTTATACGCATATTATACATAAATATGTTATTGCCTGTATGCATTTTGTCTCATTCCAAGGTCCTAACAACGCCAAACCAAATGGTGCTACTGGATAAAAGAAAAAAATCCCCAATCCGTTTCCCTCCAGGGACAAAGTGTGTGTTACAAGGAGAAGAAGAGTACTTTAGTAGCGGTTTCCAC                                                                                                                                    ]


>consensus_5120#2 GGAGCAGCGGAAGAAGGAGTTTGTCAAGTATTCCAAAAAGTTTAGCACCACCCTAAAGGA GTACTTTAAGGAGGGAGAGGCTAATGCCGTATTCCTTTATTCCATTCCGCCAGCATTCAC TAACTTTTACTACGAAAGAATGGAGTATTATTAATATTATAGTTACTATTACACCACGGC TACTTGGCGCGCTGCCCAGGCAGAATATCAGTTTTCCCCCCCAGACCAAGCTGTTTAAAT GACGTGCAACATTCTGGCCCTTAGGCGGTGCTAGAGCGTTTAAAAACAAAACGTATTTTC CCGGGCCCCCGGCATATATTTATACGCATATTATACATAAATATGTTATTGCCTGTATGC ATTTTGTCTCATTCCAAGGTCCTAACAACGCCAAACCAAATGGTGCTACTGGATAAAAGA AAAAAATCCCCAATCCGTTTCCCTCCAGGGACAAAGTGTGTGTTACAAGGAGAAGAAGAG TACCTTAGTAGCGGTTTCCACGCAAAACCCGTTGAAGCGCGACACACTTTTTGCCAATCG TAATTTTGGCATCATTTCGAAAATTGTTACGAATATTTACATTTTCTGTAGTGGAGGGAG GAACAGCCACTAACAGGTATATTGGATGGTGCA



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_5120#1      ------------------------------------------------------------
consensus_5120#2      ------------------------------------------------------------
consensus_5120#0      CCCGAGGTTATAAAGAAATAGCCAGTGCCATCAAAAAGCTGCTCGATGCGGTTAACGAAG 60
                                                                                  

consensus_5120#1      --------------------------------------GAATTGCCGAGGTTAAACGTAT 22
consensus_5120#2      ----------------------------------------GGAGCAGCGGAAGAAGGAGT 20
consensus_5120#0      TGGTCGGCTTTATACCGGGCTCGTCCGGCAAACAGGCGGTGGAGCAGCGGAAGAAGGAGT 120
                                                                 ** * **   ** *  *

consensus_5120#1      TTTCCCGGGCCCCGGCATATATTTATACTGCATATTATACATAAATATGTTATTGCCTGT 82
consensus_5120#2      TTGTCAAGTATTCCAAAAAGTTTAGCACCACCC----TAAAGGAGTACTTTAAGGAGGGA 76
consensus_5120#0      TTGTCAAGTATTCCAAAAAGTTTAGCACCACCC----TAAAGGAGTACTTTAAGGAGGGA 176
                      **  *  *    *   * *  **   **  *      ** *  * **  ***  *   * 

consensus_5120#1      ATGCATTTTGTCTCATTCCAAGGTCCTAACAACGCCA--AACCAAATGGTGCTACTGGAT 140
consensus_5120#2      GAGGCTAATGCCGTATTCCTTTATTCCATTC-CGCCAGCATTCACTAACTTTTACTACGA 135
consensus_5120#0      GAGGCTAATGCCGTATTCGTAAGTGCCCTGTACCTGATACACCAAACGAACTCAGATTAT 236
                        *  *  ** *  ****     * *      *   *     **         *      

consensus_5120#1      AAAAGAAAAAAATCCCCAATCCGTTTCCCTCCAGGGACAAAGTGTGTGTTACAAGGCAGA 200
consensus_5120#2      AAGAATGGAGTATTATTAATAT---------------TATAGTTACTATTACA------- 173
consensus_5120#0      GATAACGGTGAAGAATAAGTGCGAGTAGTGCT--GATGACGGTCGTCAACAGGGCTGGGA 294
                       * *       *     * *                  *  **       *         

consensus_5120#1      ACGAAGAGTACC-TTAGTAGACGGTTTCCACAGCAAAACCCGTT-GAAGCGCGACACACT 258
consensus_5120#2      -CCACGGCTAC--TTGGCGCGCTGCCCAGGCAG-AATATCAGTT-T---TCCCCCCCAGA 225
consensus_5120#0      AGCAAAATCATGAGTATTTAACTGATAGAGAAGTTTCGTTACTTATGTANTTCTCTTTAN 354
                         *     *    *      * *       **         **          *     

consensus_5120#1      TTNTGCCAATCGTAATTNTTGGCATTCATTTCGACACAATTGCGGCAATAAAACGCTCCA 318
consensus_5120#2      CCAAGCTGTTTA-AATGACGTGCAA-CATTCTGGCCCTTAGGCGGTGCTAGAGCGTTTAA 283
consensus_5120#0      TTGTATTGTCNA-TTCTGTTNACAGTCTATTTCCCCAACGGGCGCCGTTTCACC-TCCGA 412
                                            **  *  *    *      ***    *  * *     *

consensus_5120#1      GTGCCAAGCGTGCCTATTTACTACTTGTGTGT-CGTAGTGTAGTAG-------------- 363
consensus_5120#2      AAACAAAACGTATTTTCCCGGGCCCCCGGCAT-ATATTTATACGCA-------------- 328
consensus_5120#0      CTTCCGTGCGTCCTTTANNACTGCATCAGAATCAGTACTACACAGAACAGGGTAGGGCCT 472
                         *    ***   *        *    *  *      *  *                  

consensus_5120#1      ---TAGTGTGTGTAGTAAGGGCGATAGCTT--AAGGGTGCTTCTTACTATCA--CNCCAT 416
consensus_5120#2      ---TATTATACATAA-ATATGTTATTGCCT--GTATGCATTTTGTCTCATTC--CAAGGT 380
consensus_5120#0      GGCTTCTACGCGCATCGTGTTCCCCCATTTCAATATGCGGCACGTTCTCTNAAGCACTAG 532
                         *  *      *               *      *       *    *    *     

consensus_5120#1      CACCACGGTTTCAATTCCCTGGGTAA----NGGTGCGTGCNGGAGTGTGTAGTGTGTCAG 472
consensus_5120#2      CCTAACAACGCCAAACCA------AA----TGGTGC-TACTGGA--------TAAAAGAA 421
consensus_5120#0      CNAGGCAAGGTCGCAACGCAAGATAGCAACTGGCGCTGNCAGTAGGANACATTGATACCG 592
                      *    *     *    *       *      ** **   * * *        *       

consensus_5120#1      GGGATTCNCGGGNNGGCCCCTCNANAACAAACNCACAACACTCCACCGTANNACACACGG 532
consensus_5120#2      AAAAATCCCCAATCCGTTTCCCTCCAG-----GGACAA------AGTGTGTGTTACAAGG 470
consensus_5120#0      CACNCTACTCANACCCCTCTACCCTGCTAACACTAGNGCAGGGCAGCGAAAACCAGGCCC 652
                           *               *            *         *  *      *     

consensus_5120#1      ATTCATACTAATTAAACAAACCACCATTAACGACTC------TAGGGCTAAACGGTCAAT 586
consensus_5120#2      A--------GAAGAAGAGTACC-TTAGTAGCGGTTT------CCACGCAAAAC--CCGTT 513
consensus_5120#0      AACCTAACCCAAGAGTTACTACTTTGCNCACTGCGTTGCCAACCCGGTCAAACTGNTCGC 712
                      *         *  *       *        *               *  ****       

consensus_5120#1      TTCGGGCTACTCGGGGCACGCTAGNCNAAATT--GGCACGGCGAAACAGAGGATTACANA 644
consensus_5120#2      GAAGCGCGACACACTTTTTGCCAATCGTAATTTTGGCATCATTTCGAAAATTGTTACGAA 573
consensus_5120#0      CTAAACCGCCANCCCACGGCCAACACGCAACTTTACTACCCTAGCACTGGC-ACCANACG 771
                            *  *          * *  *  ** *     *                 *    

consensus_5120#1      CACGTAATTNATTTGCCACAAC---AAANCCACCTGCTTAAAGACANCAACACAACCCGG 701
consensus_5120#2      TATTTACATTTTCTGTAGTGGA---GGGAGGAACAGCC-ACTAACAGGTATATTGGATGG 629
consensus_5120#0      ACTCTACGCTGCNNACCGCGAATGGGNAACGGACACAGAATTNACGNCTCTACTNCATCA 831
                          **                           *     *   **      *        

consensus_5120#1      GAA---------------------------------- 704
consensus_5120#2      TGCA--------------------------------- 633
consensus_5120#0      CCCCCCCCACACTACTCACCTCACCCTCNCNNTCCCC 868
                                                           




Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner    (hubert.wassner@noos.fr)