These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5121#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 933 fasta sequence [CCGGCGGTGACCAGTCCAGGGCGCGTCCAGTGTGTGTGTCTGTGTATGTTTTTGTCGGCCCTCGCCGTAGTTCAATTAACTTCAATCAAGACGAACATCCGTGTGTGCAGTTGTGTCTGTCGTTCTTGTGCGTGTGTCTGTGACTCGCTGGTGTGTCGGACAATTGCTTCAAAACTATTGATTCCCTTTTGCCAGTAATTCGATTATGCGACAACAGATGCCGCAACCTTGACGGGAGAGGAACGCTTTCGGTAGCATACGAAAGTCCCGTTTTATGTTGCCCTATTAGCGCTACATAAAAATCAACATACACACACACACACGCGCGCGTATATATTCTCACACGTCAAAACACAGTACTTTCGGTCCGATTGTAGTTTCGTTTGTTTCTTTTGTTAAGTACGTTACTGTTACGAAGAACGCGTCTGCTAGAAAGAGACGGAACGCATTTTCTTCTCACTGTTCTCCATGTGTGTGTCGTATGTGTGTGTGTCTGTTTCTCTCTCTCTCTGTCTTGCTAACTCTTGCCGGATAAAACAGCATAAAAATCCCTTTGCGAGCTAGCTGCTGTGCATTTCTTTCGCGATTATGCAGTTTCTCCGATACAGATTTCATATTAACCCCGATTTCCGGTAAAGGTTGTAAAGCAAAATAAAACAAAACCGAAGAAAAAAAACCGTCCAATTTTCCGCCAGTGAAAGCTCAGCCACTCGCGGCACACAGGCGCACACACACACCCCATGGTCTGATAAGAAAGTAGCGCAAATAGGCGCCCCGGGGCTTCGAGTAGTGTAAAAGCCATTGCAAAACGTTGGCTAGCGTTTGATTAGATTTTTGTGTGTGTGTTTCTTCGCTTGATAAGGGAAGCGCATCTCAGCTCCCTTCTCGAATTATCCATCTCACCGGGGGTAAAGTCTTGGAGCAAAAGGGGCT] [+] EMBL BM596870 [CCGGCGGTGACCAGTCCAGGGCGCGTCCAGTGTGTGTGTCTGTGTATGTTTTTGTCGGCCCTCGCCGTAGTTCAATTAACTTCAATCAAGACGAACATCCGTGTGTGCAGTTGTGTCTGTCGTTCTTGTGCGTGTGTCTGTGACTCGCTGGTGTGTCGGACAATTGCTTCAAAACTATTGATTCCCTTTTGCCAGTAATTCGATTATGCGACAACAGATGCCGCAACCTTGACGGGAGAGGAACGCTTTCGGTAGCATACGAAAGTCCCGTTTTATGTTGCCCTATTAGCGCTACATAAAAATCAACATACACACACACACACGCGCGCGTATATATTCTCACACGTCAAAACACAGTACTTTCGGTCCGATTGTAGTTTCGTTTGTTTCTTTTGTTAAGTACGTTACTGTTACGAAGAACGCGTCTGCTAGAAAGAGACGGAACGCATTTTCTTCTCACTGTTCTCCATGTGTGTGTCGTATGTGTGTGTGTCTGTTTCTCTCTCTCTCTGTCTTGCTAACTCTTGCCGGATAAAACAGCATAAAAATCCCTTTGCGAGCTAGCTGC ] [+] EMBL BM648259 [ TTTCTTTTGTTAAGTACGTTACTGTTACGAAGAACGCGTCTGCTAGAAAGAGACGGAACGCATTTTCTTCTCACTGTTCTCCATGTGTGTGTCGTATGTGTGTGTGTCTGTTTCTCTCTCTCTCTGTCTTGCTAACTCTTGCCGGATAAAACAGCATAAAAATCCCTTTGCGAGCTAGCTGCTGTGCATTTCTTTCGCGATTATGCAGTTTCTCCGATACAGATTTCATATTAACCCCGATTTCCGGTAAAGGTTGTAAAGCAAAATAAAACAAAACCGAAGAAAAAAAACCGTCCAATTTTCCGCCAGTGAAAGCTCAGCCACTCGCGGCACACAGGCGCACACACACACCCCATGGTCTGATAAGAAAGTAGCGCAAATAGGCGCCCCGGGGCTTCGAGTAGTGTAAAAGCCATTGCAAAACGTTGGCTAGCGTTTGATTAGATTTTTGTGTGTGTGTTTCTTCGCTTGATAAGGGAAGCGCATCTCAGCTCCCTTCTCGAATTATCCATCTCACCGGGGGTAAAGTCTTGGAGCAAAAGGGGCT] consensusID : consensus_5121#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 766 fasta sequence [TNGCCCGNGGTTTTAATCCGAAGCGTACGCGTGAACGAGAGCCGTCTCTGTACTCTGATGATTGCTCGAGTGCGTGTGTTTGTATGGGCGTTTGTGAATGTAATACATAAAGGGTGTATTGTGCGGGAAAGCGGGAGTGGAACTGGAACTGGCACTTGCGGGTGCGGTGTATTTGGTTAGGGTGAAGTCATCGGACAGCGGTGACCAGTCCAGAGCGCGTCCAGTGTGTGTAGTACTAGTGTATAGTATAATTGTCGGCCCTCACCGTAGTTCAATTANCTTCAATACAAAGACGAACATCCGTGTGTGCAGGTTNGTGTCTGTCGGCTCTTGTGCGTGTGTCTGTGACTCCGCTGGTAGTGTCGGACAATTGCTTCAAAACTATTGATTCCCTATNTTGCCAGTAATATCGATTATGCGACNAACAGATGCCGCAACCTTGACGGGAGAGGAACGCTTTCGGTAGCATACGAAAGTACCGTTTTATGTGGCCCTATTAGCGCTACATAAAAATCAACATACACACAACACACACAGACGCGCGTATATAATTCTACACCACGTCNAAACACAGCACCTTTCGGTCCGATTGTAGTTATCGTTATGTTANACTTATGTTCANGTACGTTACTGTTACGAAAAACGCGGTCTGCTAGAAAAGAGAACGGACACGCNTTTTCTTCTCCACCTAGTTCTCCATGATNTAGTGTCGATGTAGNAGTGTGTCAGGCTACTNNNCNCCTGACTTGTAANCNCTTGGCCGGAT] [+] EMBL AL693270 [TNGCCCGNGGTTTTAATCCGAAGCGTACGCGTGAACGAGAGCCGTCTCTGTACTCTGATGATTGCTCGAGTGCGTGTGTTTGTATGGGCGTTTGTGAATGTAATACATAAAGGGTGTATTGTGCGGGAAAGCGGGAGTGGAACTGGAACTGGCACTTGCGGGTGCGGTGTATTTGGTTAGGGTGAAGTCATCGGACAGCGGTGACCAGTCCAGAGCGCGTCCAGTGTGTGTAGTACTAGTGTATAGTATAATTGTCGGCCCTCACCGTAGTTCAATTANCTTCAATACAAAGACGAACATCCGTGTGTGCAGGTTNGTGTCTGTCGGCTCTTGTGCGTGTGTCTGTGACTCCGCTGGTAGTGTCGGACAATTGCTTCAAAACTATTGATTCCCTATNTTGCCAGTAATATCGATTATGCGACNAACAGATGCCGCAACCTTGACGGGAGAGGAACGCTTTCGGTAGCATACGAAAGTACCGTTTTATGTGGCCCTATTAGCGCTACATAAAAATCAACATACACACAACACACACAGACGCGCGTATATAATTCTACACCACGTCNAAACACAGCACCTTTCGGTCCGATTGTAGTTATCGTTATGTTANACTTATGTTCANGTACGTTACTGTTACGAAAAACGCGGTCTGCTAGAAAAGAGAACGGACACGCNTTTTCTTCTCCACCTAGTTCTCCATGATNTAGTGTCGATGTAGNAGTGTGTCAGGCTACTNNNCNCCTGACTTGTAANCNCTTGGCCGGAT] consensusID : consensus_5121#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 255 fasta sequence [CAGCAGAAATCGGCACGAGGTGTNATCCGGAAGCGTACGCGTNGAAGCGAGAGCCCGTCTCCTGTCTCTGTGTTCGCTCGAGTGCGTGTGTTATGTATAGGGCGTTTGTGAATGTAATACATAAAGGGTGTATTGTGCGCGGAAAGCGGGAGCTGGAACTGGAACTGGCACTCTGCGGCGTGCGAGTGCTATTTGGTTAGGGTGAACGCTCATCGGACAGCGGTGACCAGTCCAGGGACGCGTCCAGCTGTCTTN] [+] EMBL BX469372 [CAGCAGAAATCGGCACGAGGTGTNATCCGGAAGCGTACGCGTNGAAGCGAGAGCCCGTCTCCTGTCTCTGTGTTCGCTCGAGTGCGTGTGTTATGTATAGGGCGTTTGTGAATGTAATACATAAAGGGTGTATTGTGCGCGGAAAGCGGGAGCTGGAACTGGAACTGGCACTCTGCGGCGTGCGAGTGCTATTTGGTTAGGGTGAACGCTCATCGGACAGCGGTGACCAGTCCAGGGACGCGTCCAGCTGTCTTN] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_5121#1 -----------TNGCCCGNGGTTTTAATCCGAAGCGTACGCGTGAA------CGAGAGCC 43 consensus_5121#2 -CAGCAGAAATCGGCACGAGGTGTNATCCGGAAGCGTACGCGTNGAAG----CGAGAGCC 55 consensus_5121#0 CCGGCGGTGACCAGTCCAGGGCGCGTCCAGTGTGTGTGTCTGTGTATGTTTTTGTCGGCC 60 * * ** * ** ** * * *** consensus_5121#1 -GTCTCTGTACTCTGATG--ATTGCTCGAG-TGCGTGTGT-T-TGTAT-GG-GCGTTTGT 95 consensus_5121#2 CGTCTCCTGTCTCTG-TG--TTCGCTCGAG-TGCGTGTGT-TATGTATAGG-GCGTTTGT 109 consensus_5121#0 CTCGCCGTAGTTCAATTAACTTCAATCAAGACGAACATCCGTGTGTGCAGTTGTGTCTGT 120 * ** * * ** ** * * * *** * * ** *** consensus_5121#1 GAATGTAATACATAAAGGGTGTATTGTGCG-GGAAAGCGGGAG-TGGAACTGGAACTGGC 153 consensus_5121#2 GAATGTAATACATAAAGGGTGTATTGTGCGCGGAAAGCGGGAGCTGGAACTGGAACTGGC 169 consensus_5121#0 CGTTCTTGTGCGTGT-GTCTGTGACTCGCTGGTGTGTCGGACAATTGCTTCAAAACTATT 179 * * * * * * *** ** * *** * * **** consensus_5121#1 ACT-TGCGG-GTGCG-GTG-TATTTGGTTAGGGTGAAG--TCATCGGACAGCGGTGACCA 207 consensus_5121#2 ACTCTGCGGCGTGCGAGTGCTATTTGGTTAGGGTGAACGCTCATCGGACAGCGGTGACCA 229 consensus_5121#0 GAT-TCCCTTTTGCCAGTA--ATTCGATTATG-CGACAACAGATGCCGCAACCTTGACGG 235 * * * *** ** *** * *** * ** ** ** * **** consensus_5121#1 GTCCAGAG-CGCGTCCAGTGTGTGTAGTACTAGTGTATAGTATAATTGTCGGCCCTCACC 266 consensus_5121#2 GTCCAGGGACGCGTCCAGC-TGTCTTN--------------------------------- 255 consensus_5121#0 GAG-AGGAACGCTTTCGGT-AGCATACGAAAGTCCCGTTTTATGTTGCCCTATTAGCGCT 293 * ** *** * * * * * consensus_5121#1 GTAGTTCAATTANCTTCAATACAAAGACGAACATCCGTGTGTGCAGGTTNGTGTCTGTCG 326 consensus_5121#2 ------------------------------------------------------------ consensus_5121#0 ACATAAAAATCAACATACACACACACACACGCGCGCGTATATATTCTCACACGTCAAAAC 353 consensus_5121#1 GCTCTTGTGCGTGTGTCTGTGACTCCGCTGGTAGTGTCGGACAATTGCTTCAAAACTATT 386 consensus_5121#2 ------------------------------------------------------------ consensus_5121#0 ACAGTACTTTCGGTCCGATTGTAGTTTCGTTTGTTTCTTTTGTTAAGTACGTTACTGTTA 413 consensus_5121#1 GATTCCCTATNTTGCCAGTAATATCGATTATGCGACNAACAGATGCCGCAACCTTGACGG 446 consensus_5121#2 ------------------------------------------------------------ consensus_5121#0 CGAAGAACGCGTCTGCTAGAAAGAGACGGAACGCATTTTCTTCTCACTGTTCTCCATGTG 473 consensus_5121#1 GAGAGGAACGCTTTCGGTAGCATACGAAAGTACCGTTTTATGTGGCCCTATTAGCGCTAC 506 consensus_5121#2 ------------------------------------------------------------ consensus_5121#0 TGTGTCGTATGTGTGTGTGTCTGTTTCTCTCTCTCTCTGTCTTGCTAACTCTTGCCGGAT 533 consensus_5121#1 ATAAAAATCAACATACACACAACACACACAGACGCGCGTATATAATTCTACACCACGTCN 566 consensus_5121#2 ------------------------------------------------------------ consensus_5121#0 AAAACAGCATAAAAATCCCTTTGCGAGCTAGCTGCTGTGCATTTCTTTCGCGATTATGCA 593 consensus_5121#1 AAACACAGCACCTTTCGGTCCGATTGTAGTTATCGTTATGTTANACTTATGTTCANGTAC 626 consensus_5121#2 ------------------------------------------------------------ consensus_5121#0 GTTTCTCCGATACAGATTTCATATTAACCCCGATTTCCGGTAAAGGTTGTAAAGCAAAAT 653 consensus_5121#1 GTTACTGTTACGAAAAACGCGGTCTGCTAGAAAAGAGAACGGACACGCNTTTTCTTCTCC 686 consensus_5121#2 ------------------------------------------------------------ consensus_5121#0 AAAACAAAACCGAAGAAAAAAAACCGTCCAATTTTCCGCCAGTGAAAGCTCAGCCACTCG 713 consensus_5121#1 ACCTAGTTCTCCATGATNTAGTGTCGATGTAGNAGTGTGTCAGGCTACTNNNCNCCTGAC 746 consensus_5121#2 ------------------------------------------------------------ consensus_5121#0 CGGCACACAGGCGCACACACACACCCCATGGTCTGATAAGAAAGTAGCGCAAATAGGCGC 773 consensus_5121#1 TTGTAANCNCTTGGCCGGAT---------------------------------------- 766 consensus_5121#2 ------------------------------------------------------------ consensus_5121#0 CCCGGGGCTTCGAGTAGTGTAAAAGCCATTGCAAAACGTTGGCTAGCGTTTGATTAGATT 833 consensus_5121#1 ------------------------------------------------------------ consensus_5121#2 ------------------------------------------------------------ consensus_5121#0 TTTGTGTGTGTGTTTCTTCGCTTGATAAGGGAAGCGCATCTCAGCTCCCTTCTCGAATTA 893 consensus_5121#1 ---------------------------------------- consensus_5121#2 ---------------------------------------- consensus_5121#0 TCCATCTCACCGGGGGTAAAGTCTTGGAGCAAAAGGGGCT 933 |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||