These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5123#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 857 fasta sequence [CCTTCACTCACTCAAACGCCGCCGCTCGTGCAAATGAAATTGTTTTAGGAAGCGATGGAAGAATGTGTTGAGAAAGATTGCTTCTGCATTGGAAAAAAGAAAATTCAACATTATTTGGCATATTAAAAGCAAGCAAGCAGAAGCTGCAAGCAAACTACACGGATACACACAGACACTGAAAGCAACGGGTAGGGGTCGAATCGTGACGCAAATGCAAAAGGGCGAAATGGGGATTGCGGTTTTGTGTTGTTTTCACACACACTTCTAGAGTGCTACGGCACACCCAGAACACTCCTCTCCAATAGTATGACGTTTGATTGTGCCAAAATGTGTGACCAGAACCAGGACAAAGCCCCCGAAACATTCACCAGTACGAAACAAGAAAGTACGGACACAGCAGCCATAGTAGAAGCCTGTTGATTTGCAGAATGATTTGAACAGTTAAATACATTAGAACAAGATCCATTCCGCAAAACCAACTCCAATTTCAAGCCCATTTGCAGCGTTTGTGAAGCGACGGCCGTACCGGCTGCGGGCGTAGTGTATGAGAAAAGCTTTAAATTTAACTTTAGGTAAATTGTAAAGGTTTATCAAACAATTTAACAATTAAATCGCCTGCATTGATTGA-CGCCTGGTATGTAAACAACCACACACACACACACACACAGAGAGAAACACAGTGTTTTTGGCCTGGTGTGCCTGTGCAAGCGCCTCAAGACACAATGTGTGCGGGCTGAAAATGAGTCGGAAAACCTCCCTTATTTTCGGTCCATTTGCACATCCGTGCGTCTTTGATTCACACGCACGATTGCTGGCACGGAAAAAAAGGGAAAACTCTGATTTTGTAAAGTAATAAC] [+] EMBL BX627049 [CCTTCACTCACTCAAACGCCGCCGCTCGTGCAAATGAAATTGTTTTAGGAAGCGATGGAAGAATGTGTTGAGAAAGATTGCTTCTGCATTGGAAAAAAGAAAATTCAACATTATTTGGCATATTAAAAGCAAGCAAGCAGAAGCTGCAAGCAAACTACACGGATACACACAGACACTGAAAGCAACGGGTAGGGGTCGAATCGTGACGCAAATGCAAAAGGGCGAAATGGGGATTGCGGTTTTGTGTTGTTTTCACACACACTTCTAGAGTGCTACGGCACACCCAGAACACTCCTCTCCAATAGTATGACGTTTGATTGTGCCAAAATGTGTGACCAGAACCAGGACAAAGCCCCCGAAACATTCACCAGTACGAAACAAGAAAGTACGGACACAGCAGCCATAGTAGAAGCCTGTTGATTTGCAGAATGATTTGAACAGTTAAATACATTAGAACAAGATCCATTCCGCAAAACCAACTCCAATTTCAAGCCCATTTGCAGCGTTTGTGAAGCGACGGCCGTACCGGCTGCGGGCGTAGTGTATGAGAAAAGCTTT AATTTAACTTTAGGTAAATTGTAAAGGGTTATCAAACAATTT ACAATTAAATCGCCTGCATTGATTGA CGCCT ] [+] EMBL BX625007 [ ggCGCAAATGCAAAAGGGCGAAATGGGGATTGCGGTTTTGTGTTGTTTTCACACACACTTCTAGAGTGCTACGGCACACCCAGAACACTCCTCTCCAATAGTATGACGTTTGATTGTGCCAAAATGTGTGACCAGAACCAGGACAAAGCCCCCGAAACATTCACCAGTACGAAACAAGAAAGTACGGACACAGCAGCCATAGTAGAAGCCTGTTGATTTGCAGAATGATTTGAACAGTTAAATACATTAGAACAAGATCCATTCCGCAAAACCAACTCCAATTTCAAGCCCATTTGCAGCGTTTGTGAAGCGACGGCCGTACCGGCTGCGGGCGTAGTGTATGAGAAAAGCTTTAAATTTAACTTTAGGTAAATTGTAAAGGTTTATCAAACAATTTAACAATTAAATCGCCTGCATTGATTGA CGCCTGGTATGTAAACAACCACACACACACACACACACAGAGAGAAACACAGTGTTTTTGGCCTGGTGTGCCTGTGCAAGCGCCTCAAGACACAATGTGTGCG ] [+] EMBL BM623032 [ CCGGGACAAAGCCCCCGAAACATTCACCAGTACGAAACAAGAAAGTACGGACACAGCAGCCATAGTAGAAGCCTGTTGATTTGCAAAATGGTTTGAATAGTTAAATACATTAGAACAAGATCCATACCGCAAAACCAACTCCAATTTCAAGCCCATTTGCAGCGTTTGTGAAGCGACGGCCGTACCGGCTGCGGGCGTAGTGTATGAGAAAAGCTTTAAATTTAACTTTAGGTAAATTGTAAAGGTTTATCAAACAATTTAACAATTAAATCGCCTGCATTGATTGATCGCCTGGTATGTAAACAACCACTCACACACA A ACAC AGAGAAACACAGTGTTTTTGGCCTGGTGTGCCTGTGCAAGCGCCTCAAGACACAATGTGTGCGGGCTGAAAATGAGTCGGAAAACCTCCCTTATTTTCGGTCCATTTGCACATCCGTGCGTCTTTGATTCACACGCACGATTGCTGGCACGGAAAAAAAGGGAAAACTCTGATTTTGTAAAGTAATAAC] consensusID : consensus_5123#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 714 fasta sequence [AGATNGCCCGNNGTTAAGTGACGCAAATGCAAAGGGCGAAATGGGNGATTGCTGTNTTGTGTTGTTTTCACACACACTTCTAGAGTGCTACGGCACACCCAGAACACTCCTCTCCAATAGTATGACGTTTGATTGTGCCAAAATGTGTGACCAGAACCAGGACAAAGCCCCCGAAACATTCACCAGTACGAAACAAGAAAGTACGGACACAGCAGCCATAGTAGAAGCCTGTTGATTTGCAGAATGATTTGNACAGTTAAATACATTAGCAACAAGATCCATTCCGNGAAAACCAATCCAATTTCAAGCCCATTTGCAGCGTNTGTGAAGGCGACGGCCGTACCGGCTGCGGGCGTACTGTATTGAGAAAAGCTTTTAAAGTTCTANACTCTACAGGTAACACTCTGTCACAGGTAAATCAAACCAATTAAACAACTTAAACATCGCCTGCATTGATTGAACGCCTNGGTATGTACAAGCAACCACCAACACGAANAAAACACACAAACAGGAGGAGGACAACAGCAGNGGTCACANANNGNGCACTGNGTGTTGCCTTGTGGACACAGCGCCTACAAACGACAACCAAACAGTTGTTGCAGGGGCTGAACAACTCGAGTCTGAGAAAAACTACACTTTCATATCATNACGGGNACCATATTTGGCACAATACTGGGGCGTCTATATGGGTCTACACAACGGCACAAGAANTTG] [+] EMBL AL693310 [AGATNGCCCGNNGTTAAGTGACGCAAATGCAAAGGGCGAAATGGGNGATTGCTGTNTTGTGTTGTTTTCACACACACTTCTAGAGTGCTACGGCACACCCAGAACACTCCTCTCCAATAGTATGACGTTTGATTGTGCCAAAATGTGTGACCAGAACCAGGACAAAGCCCCCGAAACATTCACCAGTACGAAACAAGAAAGTACGGACACAGCAGCCATAGTAGAAGCCTGTTGATTTGCAGAATGATTTGNACAGTTAAATACATTAGCAACAAGATCCATTCCGNGAAAACCAATCCAATTTCAAGCCCATTTGCAGCGTNTGTGAAGGCGACGGCCGTACCGGCTGCGGGCGTACTGTATTGAGAAAAGCTTTTAAAGTTCTANACTCTACAGGTAACACTCTGTCACAGGTAAATCAAACCAATTAAACAACTTAAACATCGCCTGCATTGATTGAACGCCTNGGTATGTACAAGCAACCACCAACACGAANAAAACACACAAACAGGAGGAGGACAACAGCAGNGGTCACANANNGNGCACTGNGTGTTGCCTTGTGGACACAGCGCCTACAAACGACAACCAAACAGTTGTTGCAGGGGCTGAACAACTCGAGTCTGAGAAAAACTACACTTTCATATCATNACGGGNACCATATTTGGCACAATACTGGGGCGTCTATATGGGTCTACACAACGGCACAAGAANTTG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_5123#0 CCTTCACTCACTCAAACGCCGCCGCTCGTGCAAATGAAATTGTTTTAGGAAGCGATGGAA 60 consensus_5123#1 ------------------------------------------------------------ consensus_5123#0 GAATGTGTTGAGAAAGATTGCTTCTGCATTGGAAAAAAGAAAATTCAACATTATTTGGCA 120 consensus_5123#1 ------------------------------------------------------------ consensus_5123#0 TATTAAAAGCAAGCAAGCAGAAGCTGCAAGCAAACTACACGGATACACACAGACACTGAA 180 consensus_5123#1 ------------------------------------------------------------ consensus_5123#0 AGCAACGGGTAGGGGTCGAATCGTGACGCAAATGCAAAAGGGCGAAATGGGG-ATTGCGG 239 consensus_5123#1 --AGATNGCCCGNNGTTAA---GTGACGCAAATGCAAA-GGGCGAAATGGGNGATTGCTG 54 * * * ** * **************** ************ ***** * consensus_5123#0 TTTTGTGTTGTTTTCACACACACTTCTAGAGTGCTACGGCACACCCAGAACACTCCTCTC 299 consensus_5123#1 TNTTGTGTTGTTTTCACACACACTTCTAGAGTGCTACGGCACACCCAGAACACTCCTCTC 114 * ********************************************************** consensus_5123#0 CAATAGTATGACGTTTGATTGTGCCAAAATGTGTGACCAGAACCAGGACAAAGCCCCCGA 359 consensus_5123#1 CAATAGTATGACGTTTGATTGTGCCAAAATGTGTGACCAGAACCAGGACAAAGCCCCCGA 174 ************************************************************ consensus_5123#0 AACATTCACCAGTACGAAACAAGAAAGTACGGACACAGCAGCCATAGTAGAAGCCTGTTG 419 consensus_5123#1 AACATTCACCAGTACGAAACAAGAAAGTACGGACACAGCAGCCATAGTAGAAGCCTGTTG 234 ************************************************************ consensus_5123#0 ATTTGCAGAATGATTTGAACAGTTAAATACATTAG-AACAAGATCCATTCCGCAAAACCA 478 consensus_5123#1 ATTTGCAGAATGATTTGNACAGTTAAATACATTAGCAACAAGATCCATTCCGNGAAAACC 294 ***************** ***************** **************** *** * consensus_5123#0 ACTCCAATTTCAAGCCCATTTGCAGCGTTTGTGAAG-CGACGGCCGTACCGGCTGCGGGC 537 consensus_5123#1 AATCCAATTTCAAGCCCATTTGCAGCGTNTGTGAAGGCGACGGCCGTACCGGCTGCGGGC 354 * ************************** ******* *********************** consensus_5123#0 GTAGTGTAT-GAGAAAAGCTTTAAA----TTTAACTTTA--GGTAA-ATTGT---AAAGG 586 consensus_5123#1 GTACTGTATTGAGAAAAGCTTTTAAAGTTCTANACTCTACAGGTAACACTCTGTCACAGG 414 *** ***** ************ ** * *** ** ***** * * * * *** consensus_5123#0 TTTATCAAAC-AATTTAACAATTAAA---TCGCCTGCATTGATTGA-CGCCTGG---TAT 638 consensus_5123#1 TAAATCAAACCAATTAAACAACTTAAACATCGCCTGCATTGATTGAACGCCTNGGTATGT 474 * ******* **** ***** * ** ***************** ***** * * * consensus_5123#0 GTAAACAACCACACACAC-------ACACACACACAGA--GAGAAACACAGTGTTTTTGG 689 consensus_5123#1 ACAAGCAACCACCAACACGAANAAAACACACAAACAGGAGGAGGACAACAGCAGNGGTCA 534 ** ******* **** ******* **** *** * **** * consensus_5123#0 CCTGGTGTGC-CTGTGCAAGCGCCTCAAGACACAATGTGTGCGGGCTGAAAATGA---GT 745 consensus_5123#1 CANANNGNGCACTGNGTGTTGCCTTGTGGACACAGCGCCTACAAACGACAACCAAACAGT 594 * * ** *** * * * ****** * * * * ** * ** consensus_5123#0 CGGAAAACCTCCCTTATTTTCGGTCCATTTGCACATCCGTGCGTCTTTGAT-TCACACGC 804 consensus_5123#1 TGTTGCAGGGGCTGAACAACTCGAGTCTGAGAAAAACTACACTTTCATATCATNACGGGN 654 * * * * * * * * * * * * * * ** * consensus_5123#0 ACGATTGCTGGCACGGAAAAAAAGGGAAAACTCTGATTT-TGTAAAGTAATAAC------ 857 consensus_5123#1 ACCATATTTGGCACAATACTGGGGCGTCTATATGGGTCTACACAACGGCACAAGAANTTG 714 ** ** ****** * * * * * * * ** * * ** |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||