These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5130#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 666 fasta sequence [CGCCCAGGATTAACAACAAAAGTGCTGCTTTTTTCATCGAAATGGTATCGTTTGGAACCCTCCTCGCAGGACGACCGCAGGCTTTGGCTTGGGAATCTGGACAGTCGAATCACCGAGTATCAATTACTGAAAATCGTGCAAAAATACGGCAAAATCGAAAAGTTCGACATGCTGTTCCATCGCTCCGGGCCGCTAGCGGGCTATCCGAGGGGGTACGCCTTCGTTACGTATGAGAACCACCGAGACTCGGAATCCGCACTGCACCGGCTGGATGGGAAGCTGGTCGGGGAGAAAACGATCGTCGTCCGGTGNGGCGAAACACGTCAACCGTGAGGAAAATGATCGATCGAAGCCTAAAATCGAGATACCCTGTCTGGCGGGCGGGTCGAAGGGTGGCTCCAACGGTCCGCTAAGCCAGCAGACCAAAATTCAAGCCCTGGAAGCGAAGCTGAAAATGTTGGAAAGCCGGTCGGACGATCTGGTGATCAACAGATCGAATAACGACGGAGCGGCCATCATCGAGCGGTACCAGTACAAAATACCAACAACCGCAGCGGCATGGATCCGAAAGACGAACGCGACCGCTCCACGAGGGGTGGCAGCAAGGGGCCGCGGCGGTCGTGGCCGGTACACCGGAGCAGCACCGTACAGACACACCAACCGCCC] [+] EMBL AL693389 [CGCCCAGGATTAACAACAAAAGTGCTGCTTTTTTCATCGAAATGGTATCGTTTGGAACCCTCCTCGCAGGACGACCGCAGGCTTTGGCTTGGGAATCTGGACAGTCGAATCACCGAGTATCAATTACTGAAAATCGTGCAAAAATACGGCAAAATCGAAAAGTTCGACATGCTGTTCCATCGCTCCGGGCCGCTAGCGGGCTATCCGAGGGGGTACGCCTTCGTTACGTATGAGAACCACCGAGACTCGGAATCCGCACTGCACCGGCTGGATGGGAAGCTGGTCGGGGAGAAAACGATCGTCGTCCGGTGNGGCGAAACACGTCAACCGTGAGGAAAATGATCGATCGAAGCCTAAAATCGAGATACCCTGTCTGGCGGGCGGGTCGAAGGGTGGCTCCAACGGTCCGCTAAGCCAGCAGACCAAAATTCAAGCCCTGGAAGCGAAGCTGAAAATGTTGGAAAGCCGGTCGGACGATCTGGTGATCAACAGATCGAATAACGACGGAGCGGCCATCATCGAGCGGTACCAGTACAAAATACCAACAACCGCAGCGGCATGGATCCGAAAGACGAACGCGACCGCTCCACGAGGGGTGGCAGCAAGGGGCCGCGGCGGTCGTGGCCGGTACACCGGAGCAGCACCGTACAGACACACCAACCGCCC] consensusID : consensus_5130#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 560 fasta sequence [GAGGTTNGTCGCAAGAAGATAACAACAAAGTGCTGCTGCTTTTCTCGTCGAAATGGATCGTTTGGAACCCTCCTCGCAGGACGACCGCAGGCTTTGGCTCGGGAATCTGGACAGTCGAATCACCGAGTAAGTAGAGCTCCAACCCTTTGTCGCCTTCATGGCGGACGCTAACCACATATAATGGAACAAACCCCCGGTTAACCGTTCACTTTTTGCTTTTGCTTCCGGTTCGTTTCCA-CAATCGGTATCAATTACTGAAAATCGTGCAAAAATACGGCAAAATCGAAAAGTTTCGACATGCTGTTCCATCGCTCCGGGCCGCTAGCGGGCTATCCCGAGGGGGTACGGCCTTCGTTACGTATGAGAACCACCGAGACTCGGAATCCGCACTGCACCGGCTGGATGGGAAGCTGGTCGGGGAGAAAACGATCGTCGTCCGGTGGGCGAAACACGTCAA-CGTGAGGAAAATGATCGATCGAAGCCCAAAATCGAGATACCCTGTCTGGCGGGCCGGGGTCGAAAGGGTGG-TCCAACGGTCCG-TAAGCCAGAGACCAAAATTC] [+] EMBL AL694192 [GAGGTTNGTCGCAAGAAGATAACAACAAAGTGCTGCTGCTTTTCTCGTCGAAATGGATCGTTTGGAACCCTCCTCGCAGGACGACCGCAGGCTTTGGCTCGGGAATCTGGACAGTCGAATCACCGAGTAAGTAGAGCTCCAACCCTTTGTCGCCTTCATGGCGGACGCTAACCACATATAATGGAACAAACCCCCGGTTAACCGTTCACTTTTTGCTTTTGCTTCCGGTTCGTTTCCA CAATCGGTATCAATTACTGAAAATCGTGCAAAAATACGGCAAAATCGAAAAGTTTCGACATGCTGTTCCATCGCTCCGGGCCGCTAGCGGGCTATCCCGAGGGGGTACGGCCTTCGTTACGTATGAGAACCACCGAGACTCGGAATCCGCACTGCACCGGCTGGATGGGAAGCTGGTCGGGGAGAAAACGATCGTCGTCCGGTGGGCGAAACACGTCAA CGTGAGGAAAATGATCGATCGAAGCCCAAAATCGAGATACCCTGTCTGGCGGGCCGGGGTCGAAAGGGTGG TCCAACGGTCCG TAAGCCAGAGACCAAAATTC] [+] EMBL BM588650 [ ccGAACA AACA AAAGTGCTGCTGCTTTTCTCGTCGAAATGGATCGTTTGGAACCCTCCTCGCAGGACGACCGCAGGCTTTGGCTCGGGAATCTGGACAGTCGAATCACCGAGTAAGTAGAGCTCCAACCCTTTGTCGCCTTCATGGCGGACGCTAACCACATATAATGGAACAAACCCCCGGTTAACCGTTCACTTTTTGCTTTTGCTTCCGGTTCGTTTCCACCAATCGGTATCAATTACTGAAAATCGTGCAAAAATACGGCAAAATCGAAAAG TTCGACATGCTGTTCCATCGCTCCGGGCCGCTAGCGGGCTAT CCGAGGGGGTAC GCCTTCGTTACGTATGAGAACCACCGAGACTCGGAATCCGCACTGCACCGGCTGGATGGGAAGCTGGTCGGGGAGAAAACGATCGTCGTCCGGTGGGCGAAACACGTCAACCGTGAGGAAAATGATCGATCGAAGCCCAAAATCGAGATACCCTGTCTGGCGGGC GGGTCGAAA GGTGGCTCCAACGGTCCGCTAAGCCAGcag ] consensusID : consensus_5130#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 381 fasta sequence [TTTTCTCGTCGAAATGGATCGTTTGGAACCCTCCTCGCAGGACGACCGCAGGCTTTGGCTCGGGAATCTGGACAGTCGAATCACCGATTCGACATGCTGTTCCATCGCTCCGGGCCGCTAGCGGGCTATCCGAGGGGGTACGCCTTCGTTACGTATGAGAACCACCGAGACTCGGAATCCGCACTGCACCGGCTGGATGGGAAGCTGGTCGGGGAGAAAACGATCGTCGTCCGGTGGGCGAAACACGTCAACCGTGAGGAAAATGATCGATCGAAGCCCAAAATCGAGATACCCTGTCTGGCGGGCGGGTCGAAGGGTGGCTCCAACGGTCCGCTAAGCCAGCAGACCAAAATTCAAGCCCTGGAAGCGAAGCTGAAAATG] [+] EMBL BX610577 [TTTTCTCGTCGAAATGGATCGTTTGGAACCCTCCTCGCAGGACGACCGCAGGCTTTGGCTCGGGAATCTGGACAGTCGAATCACCGATTCGACATGCTGTTCCATCGCTCCGGGCCGCTAGCGGGCTATCCGAGGGGGTACGCCTTCGTTACGTATGAGAACCACCGAGACTCGGAATCCGCACTGCACCGGCTGGATGGGAAGCTGGTCGGGGAGAAAACGATCGTCGTCCGGTGGGCGAAACACGTCAACCGTGAGGAAAATGATCGATCGAAGCCCAAAATCGAGATACCCTGTCTGGCGGGCGGGTCGAAGGGTGGCTCCAACGGTCCGCTAAGCCAGCAGACCAAAATTCAAGCCCTGGAAGCGAAGCTGAAAATG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_5130#0 ---------CGCCCAGGATTAACAACAAAAG--TGCTGCTTTTTTCATCGAAATGGTATC 49 consensus_5130#2 ---------------------------------------TTTTCTCGTCGAAATGG-ATC 20 consensus_5130#1 GAGGTTNGTCGCAAGAAGATAACAACAAAGTGCTGCTGCTTTTCTCGTCGAAATGG-ATC 59 **** ** ********* *** consensus_5130#0 GTTTGGAACCCTCCTCGCAGGACGACCGCAGGCTTTGGCTTGGGAATCTGGACAGTCGAA 109 consensus_5130#2 GTTTGGAACCCTCCTCGCAGGACGACCGCAGGCTTTGGCTCGGGAATCTGGACAGTCGAA 80 consensus_5130#1 GTTTGGAACCCTCCTCGCAGGACGACCGCAGGCTTTGGCTCGGGAATCTGGACAGTCGAA 119 **************************************** ******************* consensus_5130#0 TCACCGAGTA-------------------------------------------------- 119 consensus_5130#2 TCACCGA----------------------------------------------------- 87 consensus_5130#1 TCACCGAGTAAGTAGAGCTCCAACCCTTTGTCGCCTTCATGGCGGACGCTAACCACATAT 179 ******* consensus_5130#0 ------------------------------------------------------------ consensus_5130#2 ------------------------------------------------------------ consensus_5130#1 AATGGAACAAACCCCCGGTTAACCGTTCACTTTTTGCTTTTGCTTCCGGTTCGTTTCCAC 239 consensus_5130#0 --------TCAATTACTGAAAATCGTGCAAAAATACGGCAAAATCGAAAAG-TTCGACAT 170 consensus_5130#2 ----------------------------------------------------TTCGACAT 95 consensus_5130#1 AATCGGTATCAATTACTGAAAATCGTGCAAAAATACGGCAAAATCGAAAAGTTTCGACAT 299 ******** consensus_5130#0 GCTGTTCCATCGCTCCGGGCCGCTAGCGGGCTATCC-GAGGGGGTACG-CCTTCGTTACG 228 consensus_5130#2 GCTGTTCCATCGCTCCGGGCCGCTAGCGGGCTATCC-GAGGGGGTACG-CCTTCGTTACG 153 consensus_5130#1 GCTGTTCCATCGCTCCGGGCCGCTAGCGGGCTATCCCGAGGGGGTACGGCCTTCGTTACG 359 ************************************ *********** *********** consensus_5130#0 TATGAGAACCACCGAGACTCGGAATCCGCACTGCACCGGCTGGATGGGAAGCTGGTCGGG 288 consensus_5130#2 TATGAGAACCACCGAGACTCGGAATCCGCACTGCACCGGCTGGATGGGAAGCTGGTCGGG 213 consensus_5130#1 TATGAGAACCACCGAGACTCGGAATCCGCACTGCACCGGCTGGATGGGAAGCTGGTCGGG 419 ************************************************************ consensus_5130#0 GAGAAAACGATCGTCGTCCGGTGNGGCGAAACACGTCAACCGTGAGGAAAATGATCGATC 348 consensus_5130#2 GAGAAAACGATCGTCGTCCGGTGGG-CGAAACACGTCAACCGTGAGGAAAATGATCGATC 272 consensus_5130#1 GAGAAAACGATCGTCGTCCGGTGGG-CGAAACACGTCAAC-GTGAGGAAAATGATCGATC 477 *********************** * ************** ******************* consensus_5130#0 GAAGCCTAAAATCGAGATACCCTGTCTGGCGGGC--GGGTCGAAGGGTGGCTCCAACGGT 406 consensus_5130#2 GAAGCCCAAAATCGAGATACCCTGTCTGGCGGGC--GGGTCGAAGGGTGGCTCCAACGGT 330 consensus_5130#1 GAAGCCCAAAATCGAGATACCCTGTCTGGCGGGCCGGGGTCGAAAGGGTGGTCCAACGGT 537 ****** *************************** ******** ** * ********* consensus_5130#0 CCGCTAAGCCAGCAGACCAAAATTCAAGCCCTGGAAGCGAAGCTGAAAATGTTGGAAAGC 466 consensus_5130#2 CCGCTAAGCCAGCAGACCAAAATTCAAGCCCTGGAAGCGAAGCTGAAAATG--------- 381 consensus_5130#1 CCG-TAAGCCAG-AGACCAAAATTC----------------------------------- 560 *** ******** ************ consensus_5130#0 CGGTCGGACGATCTGGTGATCAACAGATCGAATAACGACGGAGCGGCCATCATCGAGCGG 526 consensus_5130#2 ------------------------------------------------------------ consensus_5130#1 ------------------------------------------------------------ consensus_5130#0 TACCAGTACAAAATACCAACAACCGCAGCGGCATGGATCCGAAAGACGAACGCGACCGCT 586 consensus_5130#2 ------------------------------------------------------------ consensus_5130#1 ------------------------------------------------------------ consensus_5130#0 CCACGAGGGGTGGCAGCAAGGGGCCGCGGCGGTCGTGGCCGGTACACCGGAGCAGCACCG 646 consensus_5130#2 ------------------------------------------------------------ consensus_5130#1 ------------------------------------------------------------ consensus_5130#0 TACAGACACACCAACCGCCC 666 consensus_5130#2 -------------------- consensus_5130#1 -------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||