|
These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5130#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 666 fasta sequence
[CGCCCAGGATTAACAACAAAAGTGCTGCTTTTTTCATCGAAATGGTATCGTTTGGAACCCTCCTCGCAGGACGACCGCAGGCTTTGGCTTGGGAATCTGGACAGTCGAATCACCGAGTATCAATTACTGAAAATCGTGCAAAAATACGGCAAAATCGAAAAGTTCGACATGCTGTTCCATCGCTCCGGGCCGCTAGCGGGCTATCCGAGGGGGTACGCCTTCGTTACGTATGAGAACCACCGAGACTCGGAATCCGCACTGCACCGGCTGGATGGGAAGCTGGTCGGGGAGAAAACGATCGTCGTCCGGTGNGGCGAAACACGTCAACCGTGAGGAAAATGATCGATCGAAGCCTAAAATCGAGATACCCTGTCTGGCGGGCGGGTCGAAGGGTGGCTCCAACGGTCCGCTAAGCCAGCAGACCAAAATTCAAGCCCTGGAAGCGAAGCTGAAAATGTTGGAAAGCCGGTCGGACGATCTGGTGATCAACAGATCGAATAACGACGGAGCGGCCATCATCGAGCGGTACCAGTACAAAATACCAACAACCGCAGCGGCATGGATCCGAAAGACGAACGCGACCGCTCCACGAGGGGTGGCAGCAAGGGGCCGCGGCGGTCGTGGCCGGTACACCGGAGCAGCACCGTACAGACACACCAACCGCCC]
[+] EMBL AL693389 [CGCCCAGGATTAACAACAAAAGTGCTGCTTTTTTCATCGAAATGGTATCGTTTGGAACCCTCCTCGCAGGACGACCGCAGGCTTTGGCTTGGGAATCTGGACAGTCGAATCACCGAGTATCAATTACTGAAAATCGTGCAAAAATACGGCAAAATCGAAAAGTTCGACATGCTGTTCCATCGCTCCGGGCCGCTAGCGGGCTATCCGAGGGGGTACGCCTTCGTTACGTATGAGAACCACCGAGACTCGGAATCCGCACTGCACCGGCTGGATGGGAAGCTGGTCGGGGAGAAAACGATCGTCGTCCGGTGNGGCGAAACACGTCAACCGTGAGGAAAATGATCGATCGAAGCCTAAAATCGAGATACCCTGTCTGGCGGGCGGGTCGAAGGGTGGCTCCAACGGTCCGCTAAGCCAGCAGACCAAAATTCAAGCCCTGGAAGCGAAGCTGAAAATGTTGGAAAGCCGGTCGGACGATCTGGTGATCAACAGATCGAATAACGACGGAGCGGCCATCATCGAGCGGTACCAGTACAAAATACCAACAACCGCAGCGGCATGGATCCGAAAGACGAACGCGACCGCTCCACGAGGGGTGGCAGCAAGGGGCCGCGGCGGTCGTGGCCGGTACACCGGAGCAGCACCGTACAGACACACCAACCGCCC]
consensusID : consensus_5130#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 560 fasta sequence
[GAGGTTNGTCGCAAGAAGATAACAACAAAGTGCTGCTGCTTTTCTCGTCGAAATGGATCGTTTGGAACCCTCCTCGCAGGACGACCGCAGGCTTTGGCTCGGGAATCTGGACAGTCGAATCACCGAGTAAGTAGAGCTCCAACCCTTTGTCGCCTTCATGGCGGACGCTAACCACATATAATGGAACAAACCCCCGGTTAACCGTTCACTTTTTGCTTTTGCTTCCGGTTCGTTTCCA-CAATCGGTATCAATTACTGAAAATCGTGCAAAAATACGGCAAAATCGAAAAGTTTCGACATGCTGTTCCATCGCTCCGGGCCGCTAGCGGGCTATCCCGAGGGGGTACGGCCTTCGTTACGTATGAGAACCACCGAGACTCGGAATCCGCACTGCACCGGCTGGATGGGAAGCTGGTCGGGGAGAAAACGATCGTCGTCCGGTGGGCGAAACACGTCAA-CGTGAGGAAAATGATCGATCGAAGCCCAAAATCGAGATACCCTGTCTGGCGGGCCGGGGTCGAAAGGGTGG-TCCAACGGTCCG-TAAGCCAGAGACCAAAATTC]
[+] EMBL AL694192 [GAGGTTNGTCGCAAGAAGATAACAACAAAGTGCTGCTGCTTTTCTCGTCGAAATGGATCGTTTGGAACCCTCCTCGCAGGACGACCGCAGGCTTTGGCTCGGGAATCTGGACAGTCGAATCACCGAGTAAGTAGAGCTCCAACCCTTTGTCGCCTTCATGGCGGACGCTAACCACATATAATGGAACAAACCCCCGGTTAACCGTTCACTTTTTGCTTTTGCTTCCGGTTCGTTTCCA CAATCGGTATCAATTACTGAAAATCGTGCAAAAATACGGCAAAATCGAAAAGTTTCGACATGCTGTTCCATCGCTCCGGGCCGCTAGCGGGCTATCCCGAGGGGGTACGGCCTTCGTTACGTATGAGAACCACCGAGACTCGGAATCCGCACTGCACCGGCTGGATGGGAAGCTGGTCGGGGAGAAAACGATCGTCGTCCGGTGGGCGAAACACGTCAA CGTGAGGAAAATGATCGATCGAAGCCCAAAATCGAGATACCCTGTCTGGCGGGCCGGGGTCGAAAGGGTGG TCCAACGGTCCG TAAGCCAGAGACCAAAATTC]
[+] EMBL BM588650 [ ccGAACA AACA AAAGTGCTGCTGCTTTTCTCGTCGAAATGGATCGTTTGGAACCCTCCTCGCAGGACGACCGCAGGCTTTGGCTCGGGAATCTGGACAGTCGAATCACCGAGTAAGTAGAGCTCCAACCCTTTGTCGCCTTCATGGCGGACGCTAACCACATATAATGGAACAAACCCCCGGTTAACCGTTCACTTTTTGCTTTTGCTTCCGGTTCGTTTCCACCAATCGGTATCAATTACTGAAAATCGTGCAAAAATACGGCAAAATCGAAAAG TTCGACATGCTGTTCCATCGCTCCGGGCCGCTAGCGGGCTAT CCGAGGGGGTAC GCCTTCGTTACGTATGAGAACCACCGAGACTCGGAATCCGCACTGCACCGGCTGGATGGGAAGCTGGTCGGGGAGAAAACGATCGTCGTCCGGTGGGCGAAACACGTCAACCGTGAGGAAAATGATCGATCGAAGCCCAAAATCGAGATACCCTGTCTGGCGGGC GGGTCGAAA GGTGGCTCCAACGGTCCGCTAAGCCAGcag ]
consensusID : consensus_5130#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 381 fasta sequence
[TTTTCTCGTCGAAATGGATCGTTTGGAACCCTCCTCGCAGGACGACCGCAGGCTTTGGCTCGGGAATCTGGACAGTCGAATCACCGATTCGACATGCTGTTCCATCGCTCCGGGCCGCTAGCGGGCTATCCGAGGGGGTACGCCTTCGTTACGTATGAGAACCACCGAGACTCGGAATCCGCACTGCACCGGCTGGATGGGAAGCTGGTCGGGGAGAAAACGATCGTCGTCCGGTGGGCGAAACACGTCAACCGTGAGGAAAATGATCGATCGAAGCCCAAAATCGAGATACCCTGTCTGGCGGGCGGGTCGAAGGGTGGCTCCAACGGTCCGCTAAGCCAGCAGACCAAAATTCAAGCCCTGGAAGCGAAGCTGAAAATG]
[+] EMBL BX610577 [TTTTCTCGTCGAAATGGATCGTTTGGAACCCTCCTCGCAGGACGACCGCAGGCTTTGGCTCGGGAATCTGGACAGTCGAATCACCGATTCGACATGCTGTTCCATCGCTCCGGGCCGCTAGCGGGCTATCCGAGGGGGTACGCCTTCGTTACGTATGAGAACCACCGAGACTCGGAATCCGCACTGCACCGGCTGGATGGGAAGCTGGTCGGGGAGAAAACGATCGTCGTCCGGTGGGCGAAACACGTCAACCGTGAGGAAAATGATCGATCGAAGCCCAAAATCGAGATACCCTGTCTGGCGGGCGGGTCGAAGGGTGGCTCCAACGGTCCGCTAAGCCAGCAGACCAAAATTCAAGCCCTGGAAGCGAAGCTGAAAATG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_5130#0 ---------CGCCCAGGATTAACAACAAAAG--TGCTGCTTTTTTCATCGAAATGGTATC 49
consensus_5130#2 ---------------------------------------TTTTCTCGTCGAAATGG-ATC 20
consensus_5130#1 GAGGTTNGTCGCAAGAAGATAACAACAAAGTGCTGCTGCTTTTCTCGTCGAAATGG-ATC 59
**** ** ********* ***
consensus_5130#0 GTTTGGAACCCTCCTCGCAGGACGACCGCAGGCTTTGGCTTGGGAATCTGGACAGTCGAA 109
consensus_5130#2 GTTTGGAACCCTCCTCGCAGGACGACCGCAGGCTTTGGCTCGGGAATCTGGACAGTCGAA 80
consensus_5130#1 GTTTGGAACCCTCCTCGCAGGACGACCGCAGGCTTTGGCTCGGGAATCTGGACAGTCGAA 119
**************************************** *******************
consensus_5130#0 TCACCGAGTA-------------------------------------------------- 119
consensus_5130#2 TCACCGA----------------------------------------------------- 87
consensus_5130#1 TCACCGAGTAAGTAGAGCTCCAACCCTTTGTCGCCTTCATGGCGGACGCTAACCACATAT 179
*******
consensus_5130#0 ------------------------------------------------------------
consensus_5130#2 ------------------------------------------------------------
consensus_5130#1 AATGGAACAAACCCCCGGTTAACCGTTCACTTTTTGCTTTTGCTTCCGGTTCGTTTCCAC 239
consensus_5130#0 --------TCAATTACTGAAAATCGTGCAAAAATACGGCAAAATCGAAAAG-TTCGACAT 170
consensus_5130#2 ----------------------------------------------------TTCGACAT 95
consensus_5130#1 AATCGGTATCAATTACTGAAAATCGTGCAAAAATACGGCAAAATCGAAAAGTTTCGACAT 299
********
consensus_5130#0 GCTGTTCCATCGCTCCGGGCCGCTAGCGGGCTATCC-GAGGGGGTACG-CCTTCGTTACG 228
consensus_5130#2 GCTGTTCCATCGCTCCGGGCCGCTAGCGGGCTATCC-GAGGGGGTACG-CCTTCGTTACG 153
consensus_5130#1 GCTGTTCCATCGCTCCGGGCCGCTAGCGGGCTATCCCGAGGGGGTACGGCCTTCGTTACG 359
************************************ *********** ***********
consensus_5130#0 TATGAGAACCACCGAGACTCGGAATCCGCACTGCACCGGCTGGATGGGAAGCTGGTCGGG 288
consensus_5130#2 TATGAGAACCACCGAGACTCGGAATCCGCACTGCACCGGCTGGATGGGAAGCTGGTCGGG 213
consensus_5130#1 TATGAGAACCACCGAGACTCGGAATCCGCACTGCACCGGCTGGATGGGAAGCTGGTCGGG 419
************************************************************
consensus_5130#0 GAGAAAACGATCGTCGTCCGGTGNGGCGAAACACGTCAACCGTGAGGAAAATGATCGATC 348
consensus_5130#2 GAGAAAACGATCGTCGTCCGGTGGG-CGAAACACGTCAACCGTGAGGAAAATGATCGATC 272
consensus_5130#1 GAGAAAACGATCGTCGTCCGGTGGG-CGAAACACGTCAAC-GTGAGGAAAATGATCGATC 477
*********************** * ************** *******************
consensus_5130#0 GAAGCCTAAAATCGAGATACCCTGTCTGGCGGGC--GGGTCGAAGGGTGGCTCCAACGGT 406
consensus_5130#2 GAAGCCCAAAATCGAGATACCCTGTCTGGCGGGC--GGGTCGAAGGGTGGCTCCAACGGT 330
consensus_5130#1 GAAGCCCAAAATCGAGATACCCTGTCTGGCGGGCCGGGGTCGAAAGGGTGGTCCAACGGT 537
****** *************************** ******** ** * *********
consensus_5130#0 CCGCTAAGCCAGCAGACCAAAATTCAAGCCCTGGAAGCGAAGCTGAAAATGTTGGAAAGC 466
consensus_5130#2 CCGCTAAGCCAGCAGACCAAAATTCAAGCCCTGGAAGCGAAGCTGAAAATG--------- 381
consensus_5130#1 CCG-TAAGCCAG-AGACCAAAATTC----------------------------------- 560
*** ******** ************
consensus_5130#0 CGGTCGGACGATCTGGTGATCAACAGATCGAATAACGACGGAGCGGCCATCATCGAGCGG 526
consensus_5130#2 ------------------------------------------------------------
consensus_5130#1 ------------------------------------------------------------
consensus_5130#0 TACCAGTACAAAATACCAACAACCGCAGCGGCATGGATCCGAAAGACGAACGCGACCGCT 586
consensus_5130#2 ------------------------------------------------------------
consensus_5130#1 ------------------------------------------------------------
consensus_5130#0 CCACGAGGGGTGGCAGCAAGGGGCCGCGGCGGTCGTGGCCGGTACACCGGAGCAGCACCG 646
consensus_5130#2 ------------------------------------------------------------
consensus_5130#1 ------------------------------------------------------------
consensus_5130#0 TACAGACACACCAACCGCCC 666
consensus_5130#2 --------------------
consensus_5130#1 --------------------
|
| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||