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Anopheles gambiae
cluster # 5130 cluster # 5130       Sequences # 4       consensus # 3


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_5130#0 length = 666 sequences # 1  
consensus_5130#1 length = 560 sequences # 2  
consensus_5130#2 length = 381 sequences # 1  

consensusID : consensus_5130#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 666
fasta sequence
                              [CGCCCAGGATTAACAACAAAAGTGCTGCTTTTTTCATCGAAATGGTATCGTTTGGAACCCTCCTCGCAGGACGACCGCAGGCTTTGGCTTGGGAATCTGGACAGTCGAATCACCGAGTATCAATTACTGAAAATCGTGCAAAAATACGGCAAAATCGAAAAGTTCGACATGCTGTTCCATCGCTCCGGGCCGCTAGCGGGCTATCCGAGGGGGTACGCCTTCGTTACGTATGAGAACCACCGAGACTCGGAATCCGCACTGCACCGGCTGGATGGGAAGCTGGTCGGGGAGAAAACGATCGTCGTCCGGTGNGGCGAAACACGTCAACCGTGAGGAAAATGATCGATCGAAGCCTAAAATCGAGATACCCTGTCTGGCGGGCGGGTCGAAGGGTGGCTCCAACGGTCCGCTAAGCCAGCAGACCAAAATTCAAGCCCTGGAAGCGAAGCTGAAAATGTTGGAAAGCCGGTCGGACGATCTGGTGATCAACAGATCGAATAACGACGGAGCGGCCATCATCGAGCGGTACCAGTACAAAATACCAACAACCGCAGCGGCATGGATCCGAAAGACGAACGCGACCGCTCCACGAGGGGTGGCAGCAAGGGGCCGCGGCGGTCGTGGCCGGTACACCGGAGCAGCACCGTACAGACACACCAACCGCCC]

[+] EMBL AL693389             [CGCCCAGGATTAACAACAAAAGTGCTGCTTTTTTCATCGAAATGGTATCGTTTGGAACCCTCCTCGCAGGACGACCGCAGGCTTTGGCTTGGGAATCTGGACAGTCGAATCACCGAGTATCAATTACTGAAAATCGTGCAAAAATACGGCAAAATCGAAAAGTTCGACATGCTGTTCCATCGCTCCGGGCCGCTAGCGGGCTATCCGAGGGGGTACGCCTTCGTTACGTATGAGAACCACCGAGACTCGGAATCCGCACTGCACCGGCTGGATGGGAAGCTGGTCGGGGAGAAAACGATCGTCGTCCGGTGNGGCGAAACACGTCAACCGTGAGGAAAATGATCGATCGAAGCCTAAAATCGAGATACCCTGTCTGGCGGGCGGGTCGAAGGGTGGCTCCAACGGTCCGCTAAGCCAGCAGACCAAAATTCAAGCCCTGGAAGCGAAGCTGAAAATGTTGGAAAGCCGGTCGGACGATCTGGTGATCAACAGATCGAATAACGACGGAGCGGCCATCATCGAGCGGTACCAGTACAAAATACCAACAACCGCAGCGGCATGGATCCGAAAGACGAACGCGACCGCTCCACGAGGGGTGGCAGCAAGGGGCCGCGGCGGTCGTGGCCGGTACACCGGAGCAGCACCGTACAGACACACCAACCGCCC]


>consensus_5130#0 CGCCCAGGATTAACAACAAAAGTGCTGCTTTTTTCATCGAAATGGTATCGTTTGGAACCC TCCTCGCAGGACGACCGCAGGCTTTGGCTTGGGAATCTGGACAGTCGAATCACCGAGTAT CAATTACTGAAAATCGTGCAAAAATACGGCAAAATCGAAAAGTTCGACATGCTGTTCCAT CGCTCCGGGCCGCTAGCGGGCTATCCGAGGGGGTACGCCTTCGTTACGTATGAGAACCAC CGAGACTCGGAATCCGCACTGCACCGGCTGGATGGGAAGCTGGTCGGGGAGAAAACGATC GTCGTCCGGTGNGGCGAAACACGTCAACCGTGAGGAAAATGATCGATCGAAGCCTAAAAT CGAGATACCCTGTCTGGCGGGCGGGTCGAAGGGTGGCTCCAACGGTCCGCTAAGCCAGCA GACCAAAATTCAAGCCCTGGAAGCGAAGCTGAAAATGTTGGAAAGCCGGTCGGACGATCT GGTGATCAACAGATCGAATAACGACGGAGCGGCCATCATCGAGCGGTACCAGTACAAAAT ACCAACAACCGCAGCGGCATGGATCCGAAAGACGAACGCGACCGCTCCACGAGGGGTGGC AGCAAGGGGCCGCGGCGGTCGTGGCCGGTACACCGGAGCAGCACCGTACAGACACACCAA CCGCCC



consensusID : consensus_5130#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 560
fasta sequence
                              [GAGGTTNGTCGCAAGAAGATAACAACAAAGTGCTGCTGCTTTTCTCGTCGAAATGGATCGTTTGGAACCCTCCTCGCAGGACGACCGCAGGCTTTGGCTCGGGAATCTGGACAGTCGAATCACCGAGTAAGTAGAGCTCCAACCCTTTGTCGCCTTCATGGCGGACGCTAACCACATATAATGGAACAAACCCCCGGTTAACCGTTCACTTTTTGCTTTTGCTTCCGGTTCGTTTCCA-CAATCGGTATCAATTACTGAAAATCGTGCAAAAATACGGCAAAATCGAAAAGTTTCGACATGCTGTTCCATCGCTCCGGGCCGCTAGCGGGCTATCCCGAGGGGGTACGGCCTTCGTTACGTATGAGAACCACCGAGACTCGGAATCCGCACTGCACCGGCTGGATGGGAAGCTGGTCGGGGAGAAAACGATCGTCGTCCGGTGGGCGAAACACGTCAA-CGTGAGGAAAATGATCGATCGAAGCCCAAAATCGAGATACCCTGTCTGGCGGGCCGGGGTCGAAAGGGTGG-TCCAACGGTCCG-TAAGCCAGAGACCAAAATTC]

[+] EMBL AL694192             [GAGGTTNGTCGCAAGAAGATAACAACAAAGTGCTGCTGCTTTTCTCGTCGAAATGGATCGTTTGGAACCCTCCTCGCAGGACGACCGCAGGCTTTGGCTCGGGAATCTGGACAGTCGAATCACCGAGTAAGTAGAGCTCCAACCCTTTGTCGCCTTCATGGCGGACGCTAACCACATATAATGGAACAAACCCCCGGTTAACCGTTCACTTTTTGCTTTTGCTTCCGGTTCGTTTCCA CAATCGGTATCAATTACTGAAAATCGTGCAAAAATACGGCAAAATCGAAAAGTTTCGACATGCTGTTCCATCGCTCCGGGCCGCTAGCGGGCTATCCCGAGGGGGTACGGCCTTCGTTACGTATGAGAACCACCGAGACTCGGAATCCGCACTGCACCGGCTGGATGGGAAGCTGGTCGGGGAGAAAACGATCGTCGTCCGGTGGGCGAAACACGTCAA CGTGAGGAAAATGATCGATCGAAGCCCAAAATCGAGATACCCTGTCTGGCGGGCCGGGGTCGAAAGGGTGG TCCAACGGTCCG TAAGCCAGAGACCAAAATTC]
[+] EMBL BM588650             [            ccGAACA AACA  AAAGTGCTGCTGCTTTTCTCGTCGAAATGGATCGTTTGGAACCCTCCTCGCAGGACGACCGCAGGCTTTGGCTCGGGAATCTGGACAGTCGAATCACCGAGTAAGTAGAGCTCCAACCCTTTGTCGCCTTCATGGCGGACGCTAACCACATATAATGGAACAAACCCCCGGTTAACCGTTCACTTTTTGCTTTTGCTTCCGGTTCGTTTCCACCAATCGGTATCAATTACTGAAAATCGTGCAAAAATACGGCAAAATCGAAAAG TTCGACATGCTGTTCCATCGCTCCGGGCCGCTAGCGGGCTAT CCGAGGGGGTAC GCCTTCGTTACGTATGAGAACCACCGAGACTCGGAATCCGCACTGCACCGGCTGGATGGGAAGCTGGTCGGGGAGAAAACGATCGTCGTCCGGTGGGCGAAACACGTCAACCGTGAGGAAAATGATCGATCGAAGCCCAAAATCGAGATACCCTGTCTGGCGGGC  GGGTCGAAA GGTGGCTCCAACGGTCCGCTAAGCCAGcag         ]


>consensus_5130#1 GAGGTTNGTCGCAAGAAGATAACAACAAAGTGCTGCTGCTTTTCTCGTCGAAATGGATCG TTTGGAACCCTCCTCGCAGGACGACCGCAGGCTTTGGCTCGGGAATCTGGACAGTCGAAT CACCGAGTAAGTAGAGCTCCAACCCTTTGTCGCCTTCATGGCGGACGCTAACCACATATA ATGGAACAAACCCCCGGTTAACCGTTCACTTTTTGCTTTTGCTTCCGGTTCGTTTCCACA ATCGGTATCAATTACTGAAAATCGTGCAAAAATACGGCAAAATCGAAAAGTTTCGACATG CTGTTCCATCGCTCCGGGCCGCTAGCGGGCTATCCCGAGGGGGTACGGCCTTCGTTACGT ATGAGAACCACCGAGACTCGGAATCCGCACTGCACCGGCTGGATGGGAAGCTGGTCGGGG AGAAAACGATCGTCGTCCGGTGGGCGAAACACGTCAACGTGAGGAAAATGATCGATCGAA GCCCAAAATCGAGATACCCTGTCTGGCGGGCCGGGGTCGAAAGGGTGGTCCAACGGTCCG TAAGCCAGAGACCAAAATTC



consensusID : consensus_5130#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 381
fasta sequence
                              [TTTTCTCGTCGAAATGGATCGTTTGGAACCCTCCTCGCAGGACGACCGCAGGCTTTGGCTCGGGAATCTGGACAGTCGAATCACCGATTCGACATGCTGTTCCATCGCTCCGGGCCGCTAGCGGGCTATCCGAGGGGGTACGCCTTCGTTACGTATGAGAACCACCGAGACTCGGAATCCGCACTGCACCGGCTGGATGGGAAGCTGGTCGGGGAGAAAACGATCGTCGTCCGGTGGGCGAAACACGTCAACCGTGAGGAAAATGATCGATCGAAGCCCAAAATCGAGATACCCTGTCTGGCGGGCGGGTCGAAGGGTGGCTCCAACGGTCCGCTAAGCCAGCAGACCAAAATTCAAGCCCTGGAAGCGAAGCTGAAAATG]

[+] EMBL BX610577             [TTTTCTCGTCGAAATGGATCGTTTGGAACCCTCCTCGCAGGACGACCGCAGGCTTTGGCTCGGGAATCTGGACAGTCGAATCACCGATTCGACATGCTGTTCCATCGCTCCGGGCCGCTAGCGGGCTATCCGAGGGGGTACGCCTTCGTTACGTATGAGAACCACCGAGACTCGGAATCCGCACTGCACCGGCTGGATGGGAAGCTGGTCGGGGAGAAAACGATCGTCGTCCGGTGGGCGAAACACGTCAACCGTGAGGAAAATGATCGATCGAAGCCCAAAATCGAGATACCCTGTCTGGCGGGCGGGTCGAAGGGTGGCTCCAACGGTCCGCTAAGCCAGCAGACCAAAATTCAAGCCCTGGAAGCGAAGCTGAAAATG]


>consensus_5130#2 TTTTCTCGTCGAAATGGATCGTTTGGAACCCTCCTCGCAGGACGACCGCAGGCTTTGGCT CGGGAATCTGGACAGTCGAATCACCGATTCGACATGCTGTTCCATCGCTCCGGGCCGCTA GCGGGCTATCCGAGGGGGTACGCCTTCGTTACGTATGAGAACCACCGAGACTCGGAATCC GCACTGCACCGGCTGGATGGGAAGCTGGTCGGGGAGAAAACGATCGTCGTCCGGTGGGCG AAACACGTCAACCGTGAGGAAAATGATCGATCGAAGCCCAAAATCGAGATACCCTGTCTG GCGGGCGGGTCGAAGGGTGGCTCCAACGGTCCGCTAAGCCAGCAGACCAAAATTCAAGCC CTGGAAGCGAAGCTGAAAATG



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_5130#0      ---------CGCCCAGGATTAACAACAAAAG--TGCTGCTTTTTTCATCGAAATGGTATC 49
consensus_5130#2      ---------------------------------------TTTTCTCGTCGAAATGG-ATC 20
consensus_5130#1      GAGGTTNGTCGCAAGAAGATAACAACAAAGTGCTGCTGCTTTTCTCGTCGAAATGG-ATC 59
                                                             **** ** ********* ***

consensus_5130#0      GTTTGGAACCCTCCTCGCAGGACGACCGCAGGCTTTGGCTTGGGAATCTGGACAGTCGAA 109
consensus_5130#2      GTTTGGAACCCTCCTCGCAGGACGACCGCAGGCTTTGGCTCGGGAATCTGGACAGTCGAA 80
consensus_5130#1      GTTTGGAACCCTCCTCGCAGGACGACCGCAGGCTTTGGCTCGGGAATCTGGACAGTCGAA 119
                      **************************************** *******************

consensus_5130#0      TCACCGAGTA-------------------------------------------------- 119
consensus_5130#2      TCACCGA----------------------------------------------------- 87
consensus_5130#1      TCACCGAGTAAGTAGAGCTCCAACCCTTTGTCGCCTTCATGGCGGACGCTAACCACATAT 179
                      *******                                                     

consensus_5130#0      ------------------------------------------------------------
consensus_5130#2      ------------------------------------------------------------
consensus_5130#1      AATGGAACAAACCCCCGGTTAACCGTTCACTTTTTGCTTTTGCTTCCGGTTCGTTTCCAC 239
                                                                                  

consensus_5130#0      --------TCAATTACTGAAAATCGTGCAAAAATACGGCAAAATCGAAAAG-TTCGACAT 170
consensus_5130#2      ----------------------------------------------------TTCGACAT 95
consensus_5130#1      AATCGGTATCAATTACTGAAAATCGTGCAAAAATACGGCAAAATCGAAAAGTTTCGACAT 299
                                                                          ********

consensus_5130#0      GCTGTTCCATCGCTCCGGGCCGCTAGCGGGCTATCC-GAGGGGGTACG-CCTTCGTTACG 228
consensus_5130#2      GCTGTTCCATCGCTCCGGGCCGCTAGCGGGCTATCC-GAGGGGGTACG-CCTTCGTTACG 153
consensus_5130#1      GCTGTTCCATCGCTCCGGGCCGCTAGCGGGCTATCCCGAGGGGGTACGGCCTTCGTTACG 359
                      ************************************ *********** ***********

consensus_5130#0      TATGAGAACCACCGAGACTCGGAATCCGCACTGCACCGGCTGGATGGGAAGCTGGTCGGG 288
consensus_5130#2      TATGAGAACCACCGAGACTCGGAATCCGCACTGCACCGGCTGGATGGGAAGCTGGTCGGG 213
consensus_5130#1      TATGAGAACCACCGAGACTCGGAATCCGCACTGCACCGGCTGGATGGGAAGCTGGTCGGG 419
                      ************************************************************

consensus_5130#0      GAGAAAACGATCGTCGTCCGGTGNGGCGAAACACGTCAACCGTGAGGAAAATGATCGATC 348
consensus_5130#2      GAGAAAACGATCGTCGTCCGGTGGG-CGAAACACGTCAACCGTGAGGAAAATGATCGATC 272
consensus_5130#1      GAGAAAACGATCGTCGTCCGGTGGG-CGAAACACGTCAAC-GTGAGGAAAATGATCGATC 477
                      *********************** * ************** *******************

consensus_5130#0      GAAGCCTAAAATCGAGATACCCTGTCTGGCGGGC--GGGTCGAAGGGTGGCTCCAACGGT 406
consensus_5130#2      GAAGCCCAAAATCGAGATACCCTGTCTGGCGGGC--GGGTCGAAGGGTGGCTCCAACGGT 330
consensus_5130#1      GAAGCCCAAAATCGAGATACCCTGTCTGGCGGGCCGGGGTCGAAAGGGTGGTCCAACGGT 537
                      ****** ***************************  ******** **  * *********

consensus_5130#0      CCGCTAAGCCAGCAGACCAAAATTCAAGCCCTGGAAGCGAAGCTGAAAATGTTGGAAAGC 466
consensus_5130#2      CCGCTAAGCCAGCAGACCAAAATTCAAGCCCTGGAAGCGAAGCTGAAAATG--------- 381
consensus_5130#1      CCG-TAAGCCAG-AGACCAAAATTC----------------------------------- 560
                      *** ******** ************                                   

consensus_5130#0      CGGTCGGACGATCTGGTGATCAACAGATCGAATAACGACGGAGCGGCCATCATCGAGCGG 526
consensus_5130#2      ------------------------------------------------------------
consensus_5130#1      ------------------------------------------------------------
                                                                                  

consensus_5130#0      TACCAGTACAAAATACCAACAACCGCAGCGGCATGGATCCGAAAGACGAACGCGACCGCT 586
consensus_5130#2      ------------------------------------------------------------
consensus_5130#1      ------------------------------------------------------------
                                                                                  

consensus_5130#0      CCACGAGGGGTGGCAGCAAGGGGCCGCGGCGGTCGTGGCCGGTACACCGGAGCAGCACCG 646
consensus_5130#2      ------------------------------------------------------------
consensus_5130#1      ------------------------------------------------------------
                                                                                  

consensus_5130#0      TACAGACACACCAACCGCCC 666
consensus_5130#2      --------------------
consensus_5130#1      --------------------
                                          




Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner    (hubert.wassner@noos.fr)