These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5132#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1075 fasta sequence [ATGACATAATATTGAAATGGAAAATCTAGCCAGACGAGAACGTGAAAAGAATGAACTAAAGTCTAATTTATTTATATATAATATACTATATACAGATAAACGTAAGCAATAAAAAAACAAAAGTAGAGAAACTGATAAGTCAACCCGACAATGGCAAAGTAAAACTGGAAACGAAATTTAAACCATAAATTAGTCGAAACGGTGTGAAGCATGGCAAGCGTAAAACAGAACAGAACAGAAAAATAACACAGAAAAACGTGTGAGATGCATTATAAAAAGAGTATAATAATCGATATATACCAACACTTATATATATATACATTAAATATATACAAAGTAAACGAACCCTAGGGTGTAAGGTACTAGTGAACAACACAAAGAAAACACAAAATGAAAGCACATTTTATTCCCCATCATTGGGAGGGGGAGAGAAAAAAAACTCATTCATTACGTCAATCTCCATACCTCCTCATACGGACACATTTCACGTCACACGAAAACACTCTTAACCAAACCACTCCCTTAGATGGTTAGAAATGTAAGGAAAGACACTGGAGAAAGTAAAAGAATAAACAACTGAAAATGCATAAAACTCACTCAATCTTACCATACAACTGACACAGACAGAGGCAGAGAGAGAGAGACACGTTATCTAATACATCATGTATCGGCAGGATGCCAACGGAAACGATGATATTTTTT-AAAATATTATACCTATACACATGCCGCAATGGAGAAGAGAGCAAGGAAGCAGATATTGTAACGACAAATGAATTGGTTTGGTTAGGAAAGGCCAACGGTTAGACAATGATATGAGTGTTTGTATGTATATGTGTGTGTGTGTGTAAGAGAATGTGCACCGATGGAACAACACCACCGTAGTGGAACGTCGGAGAAACCCACACACACACACGCATTATTGAATAGTAAAATTGGAAAGACGGTAGGGATTGGGATGCCAATGGCTATGATGAAGTGAGAGTAATAAAATAATTAGGAAAATGAAATAATTTATACAATAAACAACCCGATAGCAACGCGGTGAAACATTTGGAGTGAAATCTAAAACAGTAGA] [+] EMBL BX621337 [ATGACATAATATTGAAATGGAAAATCTAGCCAGACGAGAACGTGAAAAGAATGAACTAAAGTCTAATTTATTTATATATAATATACTATATACAGATAAACGTAAGCAATAAAAAAACAAAAGTAGAGAAACTGATAAGTCAACCCGACAATGGCAAAGTAAAACTGGAAACGAAATTTAAACCATAAATTAGTCGAAACGGTGTGAAGCATGGCAAGCGTAAAACAGAACAGAACAGAAAAATAACACAGAAAAACGTGTGAGATGCATTATAAAAAGAGTATAATAATCGATATATACCAACACTTATATATATATACATTAAATATATACAAAGTAAACGAACCCTAGGGTGTAAGGTACTAGTGAACAACACAAAGAAAACACAAAATGAAAGCACATTTTATTCCCCATCATTGGGAGGGGGAGAGAAAAAAAACTCATTCATTACGTCAATCTCCATACCTCCTCATACGGACACATTTCACGTCACACGAAAACACTCTTAACCAAACCACTCCCTTAGATGGTTAGAAATGTAAGGAAAGACACTGGAGAAAGTAAAAGAATAAACAACTGAAAATGCATAAAACTCACTCAATCTTACCATACAACTGACACAGACAGAGGCAGAGAGAGAGAGACACGTTATCTAATACATCATGTATCGGCAGGATGCCAACGGAAACGATGATATTTTTT AAAATATTATACCTATACACATGCCGCAATGGAGAAGAGAGCAAGGAAGCAGATA ] [+] EMBL BX625867 [ AAACGAAATTTAAACCATAAATTAGTCGAAACGGTGTGAAGCATGGCAAGCGTAA AACAGAACAGAAAAATAACACAGAAAAACGTGTGAGATGCATTATAAAAAGAGCATAATAATCGATATATACCAACACTTATATATATA ] [+] EMBL BX626743 [ ACAGAGAGAGAGAGAGAGAGACACGTTATCTAATACATCATGTATCGGCAGGATGCCAACGGAAACGATGATATTTTTTAAAAATATTATACCTATACACATGCCGCAATGGAGAAGAGAGCAAGGAAGCAGATATTGTAACGACAAATGAATTGGTTTGGTTAGGAAAGGCCAACGGTTAGACAATGATATGAGTGTTTGTATGTATATGTGTGTGTGTGTGTAAGAGAATGTGCACCGATGGAACAACACCACCGTAGTGGAACGTCGGAGAAACCCACACACACACACGCATTATTGAATAGTAAAATTGGAAAGACGGTAGGGATTGGGATGCCAATGGCTATGATGAAGTGAGAGTAATAAAATAATTAGGAAAATGAAATAATTTATACAATAAACAACCCGATAGCAACGCGGTGAAACATTTGGAGTGAAATCTAAAACAGTAGA] consensusID : consensus_5132#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 908 fasta sequence [CCCCGGATTTAACAAACAAAAAAAAAAAAACCACATGACTGAGAAANNCAAGAAAAAATGAGACCCCTGTGCACGCGCAGAGATGACATAATATTGAAATGGAAAATCTAGCCAGACGAGAACGTGAAAAGAATGAACTAAAGTCTAATTTATTTATATATNATATACTATATACAGATAAACGTAAGCAATAACAAAACCAAAAGTNGAGACANACTGCATAAGTCAACCCGACAATGGCAAAGTAAANCTGGCAAAACGAAATTTAAACCATAAATTAGTCGAAACGGTGTGCAAGCATGGCANGCGTAAAACAGAACAGAACAGACACACAATAAACACNAGCAAACANANCGTCGTTGCANCCATGCAATTTATCACANACAAGCAGTCTTCAATCCACATCNGCACATATATTCACCCACACCACTTCATCATATCATATTCACATTTCAACATAATNATACACCAAACAANTTCAAACACGAAAACCCCTAAAGGATGTANAGGTTCACCTCAGATTGAAGCAACACAAAGCAAAACACAAAATGAAAGCACATTATTATTCCCCATCATTGGGAGGGGGNAGAAGAAAAAACTACTCATTCCATTACGTCAAGTCTCCATACCTCCATCATACGGACACNATTTCACCGTCACATGAAAAACACTCTATAAACCACAACCACTCCCTATCAGAATCGGGTAAAAGAAAAATGGTACAGGAAAGNAACACTTGGGNAGAAACATGTAACACACAGGCAATTACACCACAACTTGANAAATTGCCTACAAAAATCCACTGCAANTCTTTACCATCACAATTGAACACAANNCACAAGACAGCAGAAGAANNNGCACAAGCAGAACNGANCACGTACTCTCTAAATAACCNCNCATGTATCCGG] [+] EMBL AL693409 [CCCCGGATTTAACAAACAAAAAAAAAAAAACCACATGACTGAGAAANNCAAGAAAAAATGAGACCCCTGTGCACGCGCAGAGATGACATAATATTGAAATGGAAAATCTAGCCAGACGAGAACGTGAAAAGAATGAACTAAAGTCTAATTTATTTATATATNATATACTATATACAGATAAACGTAAGCAATAACAAAACCAAAAGTNGAGACANACTGCATAAGTCAACCCGACAATGGCAAAGTAAANCTGGCAAAACGAAATTTAAACCATAAATTAGTCGAAACGGTGTGCAAGCATGGCANGCGTAAAACAGAACAGAACAGACACACAATAAACACNAGCAAACANANCGTCGTTGCANCCATGCAATTTATCACANACAAGCAGTCTTCAATCCACATCNGCACATATATTCACCCACACCACTTCATCATATCATATTCACATTTCAACATAATNATACACCAAACAANTTCAAACACGAAAACCCCTAAAGGATGTANAGGTTCACCTCAGATTGAAGCAACACAAAGCAAAACACAAAATGAAAGCACATTATTATTCCCCATCATTGGGAGGGGGNAGAAGAAAAAACTACTCATTCCATTACGTCAAGTCTCCATACCTCCATCATACGGACACNATTTCACCGTCACATGAAAAACACTCTATAAACCACAACCACTCCCTATCAGAATCGGGTAAAAGAAAAATGGTACAGGAAAGNAACACTTGGGNAGAAACATGTAACACACAGGCAATTACACCACAACTTGANAAATTGCCTACAAAAATCCACTGCAANTCTTTACCATCACAATTGAACACAANNCACAAGACAGCAGAAGAANNNGCACAAGCAGAACNGANCACGTACTCTCTAAATAACCNCNCATGTATCCGG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_5132#0 ------------------------------------------------------------ consensus_5132#1 CCCCGGATTTAACAAACAAAAAAAAAAAAACCACATGACTGAGAAANNCAAGAAAAAATG 60 consensus_5132#0 ----------------------ATGACATAATATTGAAATGGAAAATCTAGCCAGACGAG 38 consensus_5132#1 AGACCCCTGTGCACGCGCAGAGATGACATAATATTGAAATGGAAAATCTAGCCAGACGAG 120 ************************************** consensus_5132#0 AACGTGAAAAGAATGAACTAAAGTCTAATTTATTTATATATAATATACTATATACAGATA 98 consensus_5132#1 AACGTGAAAAGAATGAACTAAAGTCTAATTTATTTATATATNATATACTATATACAGATA 180 ***************************************** ****************** consensus_5132#0 AACGTAAGCAATAAAAAAAC-AAAAGTAGAGA--AACTG-ATAAGTCAACCCGACAATGG 154 consensus_5132#1 AACGTAAGCAATAACAAAACCAAAAGTNGAGACANACTGCATAAGTCAACCCGACAATGG 240 ************** ***** ****** **** **** ******************** consensus_5132#0 CAAAGTAAAACTGG--AAACGAAATTTAAACCATAAATTAGTCGAAACGGTGTG-AAGCA 211 consensus_5132#1 CAAAGTAAANCTGGCAAAACGAAATTTAAACCATAAATTAGTCGAAACGGTGTGCAAGCA 300 ********* **** ************************************** ***** consensus_5132#0 TGGCAAGCGTAAAACAGAACAGAACAGAAAAATAA----CACAGAAAAACGTGT------ 261 consensus_5132#1 TGGCANGCGTAAAACAGAACAGAACAGACACACAATAAACACNAGCAAACANANCGTCGT 360 ***** ********************** * * ** *** **** consensus_5132#0 ----GAGATGCA--TTATAAAAAGAGTATAATAATCGATATATACCAACACTTATAT--- 312 consensus_5132#1 TGCANCCATGCAATTTATCACANACAAGCAGTCTTCAATCCACATCNGCACATATATTCA 420 ***** **** * * * * ** ** * * * *** ***** consensus_5132#0 ---------------------ATATATACATT-------AAATATATACAAAGTAAAC-- 342 consensus_5132#1 CCCACACCACTTCATCATATCATATTCACATTTCAACATAATNATACACCAAACAANTTC 480 **** ***** ** *** ** ** ** consensus_5132#0 --------GAACCCT---AGGGTGTAAGG---TACT----AGTGAA-CAACACAAAG-AA 382 consensus_5132#1 AAACACGAAAACCCCTAAAGGATGTANAGGTTCACCTCAGATTGAAGCAACACAAAGCAA 540 ***** *** **** * ** * **** ********** ** consensus_5132#0 AACACAAAATGAAAGCACATT-TTATTCCCCATCATTGGGAGGGGGAGAGAAAAAAAACT 441 consensus_5132#1 AACACAAAATGAAAGCACATTATTATTCCCCATCATTGGGAGGGGGNAGAAGAAAAAACT 600 ********************* ************************ * ******** consensus_5132#0 ---CATTC-ATTACGTCAA-TCTCCATACCTCC-TCATACGGACACA-TTTCAC-GTCAC 493 consensus_5132#1 ACTCATTCCATTACGTCAAGTCTCCATACCTCCATCATACGGACACNATTTCACCGTCAC 660 ***** ********** ************* ************ ****** ***** consensus_5132#0 ACGAAAA-CACTCTT--AACCA-AACCACTCCCTTAGATGGTTAGAAATGTAAGGAAAGA 549 consensus_5132#1 ATGAAAAACACTCTATAAACCACAACCACTCCCT------ATCAGAATCGGGTAAAAGAA 714 * ***** ****** ***** *********** * **** * ** * consensus_5132#0 CACTGGAGAAAGTAAAAGAATAAACAACTGAAAATGCATAAAACTCACTCAATCTTACCA 609 consensus_5132#1 AAATGGTACAGG-AAAGNAACACTTGGGNAGAAACATGTAACACACAGGCAATTACACCA 773 * *** * * *** ** * *** *** ** ** **** **** consensus_5132#0 TACAACTGACACAGACAGAGGCAGAGAGAGAGAGACACGTTATCTAATACATCATGTATC 669 consensus_5132#1 CA-ACTTGANA-----AATTGCCTACAAAAATCCACTGCAANTCTTTACCATCACAATTG 827 * * *** * * ** * * * * ** *** ***** * consensus_5132#0 GGCAGGATGCCAACGGAAACGATGATATTTTTTAAAATATTATACCTATACACATGCCGC 729 consensus_5132#1 AACACAANNCACAAGACAGCAGAAGAANNNGCACAAGCAG---AACNGANCACGTACT-C 883 ** * * * * * * * ** * * * *** * * * consensus_5132#0 AATGGAGAAGAGAGCAAGGAAGCAGATATTGTAACGACAAATGAATTGGTTTGGTTAGGA 789 consensus_5132#1 TCTAAATAACCNCNCATGTATCCGG----------------------------------- 908 * * ** ** * * * * consensus_5132#0 AAGGCCAACGGTTAGACAATGATATGAGTGTTTGTATGTATATGTGTGTGTGTGTGTAAG 849 consensus_5132#1 ------------------------------------------------------------ consensus_5132#0 AGAATGTGCACCGATGGAACAACACCACCGTAGTGGAACGTCGGAGAAACCCACACACAC 909 consensus_5132#1 ------------------------------------------------------------ consensus_5132#0 ACACGCATTATTGAATAGTAAAATTGGAAAGACGGTAGGGATTGGGATGCCAATGGCTAT 969 consensus_5132#1 ------------------------------------------------------------ consensus_5132#0 GATGAAGTGAGAGTAATAAAATAATTAGGAAAATGAAATAATTTATACAATAAACAACCC 1029 consensus_5132#1 ------------------------------------------------------------ consensus_5132#0 GATAGCAACGCGGTGAAACATTTGGAGTGAAATCTAAAACAGTAGA 1075 consensus_5132#1 ---------------------------------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||