These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5138#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1412 fasta sequence [AGCTGACAGGGCACGGTCCGTCCGGTACATGACCCGAGTTCGTACGGATCGGCACAGCAGAAAAGGAAAGGTTTTGCGGACTTTTTCGCCTCACGATGGGTACGCAAATGTTTCGTTTGAGCTTTAATTGGCGCCCCGCCGACGGGTCGATCGAAAACCATGCATCCGCGGGCACAATCACTTCCTCGGAACCGGAATTTTGCACGCTGGACGATCTATTGCGCTACGACCAGTGTCTGGTTCTGTCGGGCAGTGAGGACCAAGAGCCGTGCGAAATGCATCTGGCCATAACCCCATTGTACCTGGTACGGGGCGTTTCGATCATCGCCGAATGTCCTGTCGTAGAAGTTTACTATGGCCGGTTGCGCGAATACAACCGTACCGTGCACGGGGAGCTGCTGTACACGATAGTGGATGGACATGTGTATCGGTACGACTTGAGCATCGAGACGGAGACCAGTGAGCTGCACGTGAAGTTCATTATGGACGATCCGAGCGAACCTGTATCGCTGTACACCACGCACCTGTACCTGATGCGCAACACAGACCCGTTGCGTGCGATGAGGATGATGATGGCGGAGAGCAAACTCATAAACCCGGACGCTGTGCAGCAGCGCCTGCAGGGGGCTATCCTGTCGGAGCGTGCGGAACGGAGCAAACATTTGATACTTGGCTCCATGCTTTCTGCGCAACATAACTTTGAGAACAACAACGCTAGACTATCATCGATTACAGCTGCAGCAGCAGGAAGCATGCCACTGGACAACATTGACGTTGCACATAGCAACGCACAGTCATCGGTTGAAGCGTCCACGCCGTCGAATCACACCCCGGCTGCTAACAACGACGGCCAA-TCGGCGGCTGCTG-CGCGTCGATGCTCGATAACATCCATGCTGTAAACAACAACGTTCAATCATCGGCTGGTAATGGCGTTCCTGGGCCGGTACTACCGGATATGTCCAACCTCGCGCTTTCTGTTGCCAATGGGAATATCGAAACCAGGATCAAACAGTACATCGACGCCAAATTTGTACAGCTTGAGCATTTTGTCGACAACCGACTGGCGGACCTGGCAGCTCGGCAAGATCAAAAGCTGGACCGTTTGCTGGAACTGCTACAAGAGCAACGAGGATCGGCCCAAAATGGATCGCACGGAAATAAGGCGGAACAATAATTTGCGTTGCAATAGTGCCACCACGATCTCTCCCTGTGTGGGAAGTACCTTATCTTCCCTGTGGTCTTACATTTTCCGTCCGTGGATTATACCCTTGGATGTACAGCTCTCCGACTACACGATGGGAAATTTTAATAGAGGTCCATGTCCCATTTTCCTTATACCTCATTTTGAACGAAATAATTATTGGTTTCCTTCGGTAGTGAGTAGTTTTTAGATTTATTGACACATACAAATA] [+] EMBL BX603004 [AGCTGACAGGGCACGGTCCGTCCGGTACATGACCCGAGTTCGTACGGATCGGCACAGCAGAAAAGGAAAGGTTTTGCGGACTTTTTCGCCTCACGATGGGTACGCAAATGTTTCGTTTGAGCTTTAATTGGCGCCCCGCCGACGGGTCGATCGAAAACCATGCATCCGCGGGCACAATCACTTCCTCGGAACCGGAATTTTGCACGCTGGACGATCTATTGCGCTACGACCAGTGTCTGGTTCTGTCGGGCAGTGAGGACCAAGAGCCGTGCGAAATGCATCTGGCCATAACCCCATTGTACCTGGTACGGGGCGTTTCGATCATCGCCGAATGTCCTGTCGTAGAAGTTTACTATGGCCGGTTGCGCGAATACAACCGTACCGTGCACGGGGAGCTGCTGTACACGATAGTGGATGGACATGTGTATCGGTACGACTTGAGCATCGAGACGGAGACCAGTGAGCTGCACGTGAAGTTCATTATGGACGATCCGAGCGAACCTGTATCGCTGTACACCACGCACCTGTACCTGATGC ] [+] EMBL CNS09P8Q [ GTACGCAAATGTTTCGTTTGAGCTTTAATTGGCGCCCCGCCGACGGCTCGATCGAAAACCATGCATCCGCGGACACAATCACTTCCTCGGAACCGGAATTTTGCACGCTGGACGACCTATTGCGCTACGACCAGTGTCTGGTTCTGTCGGGCAGTGAGAACCAAGAGCCGTGCGAAATGCATCTGACCATAACCCCATTGTATCTGGTACGGGGCGTTTCGATCATCGCCGAATGTCCTGTCGTAGAAGTTTACTATGGCCGGTTGCGCGAATACAACCGTACCGTGCACGGGGAGCTGCTGTACACGATAGTGGATGGACATGTGTATCGGTACGACTTGAGCATCGAGACGGAGACCAGTGAGCTGCACGTGAAGTTCATTATGGACGATCCGAGCGAACCTGTATCGCTGTACACCACGCACCTGTACCTGATGCGCAACACAGACCCGTTGCGTGCGATGAGGATGATGATGGCGGAGAGCAAACTCATAAACCCGGACGCTGTGCAGCAGCGCCTGCAGGGGGCTATCCTGTCGGAGCGTGCGGAACGGAGCAAACATTTGATACTTGGCTCCATGCTTTCTGCGCAACATAACTTTGAGAACAACAACGCTAGACTATCATCGATTACAGCTGCAGCAGCAGGAAGCATGCCACTGGACAACATTGACGTTGCACATAGCAACGCACAGTCATCGGTTGAAGCGTCCACGCCGTCGAATCACACCCCGGCTGCTAACAACGACGGCCAA TCGGCGGCTGCTG CGCGTCGATGCTCGATAACATCCATGCTGTAAACAACAACGTTCAATCATCGGCTGGTAATGGCGTTCCTGGGCCGGTACTACCGGATATGTCCAACCTCGCGCTTTCTGTTGCCAATGGGAATATCGAAACCAG ] [-] EMBL CNS09P8R [ AGCAGCGCCTGCAGGGGGCTATCCTGTCGGGGCGTGCGGAACGGAGCAAACATTTGATACTTGGCTCCATGCTTTCTGCGCAACATAACTTTGAGAACAACAACGCTAGACTATCATCGATAACAGCTGCAGCAGCAGGAAGCATGCCACTGGACAACATTGACGTTGCACATAGCAACGCACAGTCATCGGTTGAAGCGTCCACGCCGTCGAATCACACCCCGGCTGCTAACAACGACGGCCAATTCGGCGGCTG TGCCGCGTCGATGCTCGATAACATCCATGCTGTAAACAACAACGTTCAATCATCGGCTGGTAATGGCGTTCCTGGGCCGGTACTACCGGATATGTCCAACCTCGCGCTTTCTGTTGCCAATGGGAATATCGAAACCAGGATCAAACAGTACATCGACGCCAAATTTGTACAGCTTGAGCATTTTGTCGACAACCGACTGGCGGACCTGGCAGCTCGGCAAGATCAAAAGCTGGACCGTTTGCTGGAACTGCTACAAGAGCAACGAGGATCGGCCCAAAATGGATCGCACGGAAATAAGGCGGAACAATAATTTGCGTTGCAATAGTGCCACCACGATCTCTCCCTGTGTGGGAAGTACCTTATCTTCCCTGTGGTCTTACATTTTCCGTCCGTGGATTATACCCTTGGATGTACAGCTCTCCGACTACACGATGGGAAATTTTAATAGAGGTCCATGTCCCATTTTCCTTATACCTCATTTTGAACGAAATAATTATTGGTTTCCTTCGGTAGTGAGTAGTTTTTAGATTTATTGACACATACAAATA] consensusID : consensus_5138#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 588 fasta sequence [GCAGATCGCCCGAGGTTTAAGTTCGTACGGATCGGCACAGCAGAAAAGGAAAGGTTTTGCGGACTTTTTCGCCTCACGATGGGTACGCAAATGTTTCGTTTGAGCTTTAATTGGCGCCCCGCCGACGGGTCGATCGAAAACCATGCATCCGCGGGCACAATCACTTCCTCGGAACCGGAATTTTGCACGCTGGACGATCTATTGCGCTACGACCAGTGTCTGGTTCTGTCGGGCAGTGAGGACCAAGAGCCGTGCGAAATGCATCTGGCCATAACCCCATTGTACCTGGTACGGGGCGTTTCGATCATCGCCGAATGTCCTGTCGTAGAAGTTTACTATGGCCGGTTGCGCGAATACAACCGTACCGTGCACGGGGAGCTGCTGTACACGATAGTGGATGGACATGTGTATCGGTACGACTTGAGCATCGAGACGGAGACCAGTGAGCTGCACGTGAAGTTCATTATGGACGATCCGAGCGAACCTGTATCGCTGTACACCACGCACCTGTACCTGATGCGCAACACAGAACCGTTGCGTGCGATGAGGATGCTGATGGCGGAGAGCAAACTCATTAACCGGACGCTG] [+] EMBL AL693679 [GCAGATCGCCCGAGGTTTAAGTTCGTACGGATCGGCACAGCAGAAAAGGAAAGGTTTTGCGGACTTTTTCGCCTCACGATGGGTACGCAAATGTTTCGTTTGAGCTTTAATTGGCGCCCCGCCGACGGGTCGATCGAAAACCATGCATCCGCGGGCACAATCACTTCCTCGGAACCGGAATTTTGCACGCTGGACGATCTATTGCGCTACGACCAGTGTCTGGTTCTGTCGGGCAGTGAGGACCAAGAGCCGTGCGAAATGCATCTGGCCATAACCCCATTGTACCTGGTACGGGGCGTTTCGATCATCGCCGAATGTCCTGTCGTAGAAGTTTACTATGGCCGGTTGCGCGAATACAACCGTACCGTGCACGGGGAGCTGCTGTACACGATAGTGGATGGACATGTGTATCGGTACGACTTGAGCATCGAGACGGAGACCAGTGAGCTGCACGTGAAGTTCATTATGGACGATCCGAGCGAACCTGTATCGCTGTACACCACGCACCTGTACCTGATGCGCAACACAGAACCGTTGCGTGCGATGAGGATGCTGATGGCGGAGAGCAAACTCATTAACCGGACGCTG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_5138#0 AGCTGACAGGGCACGGTCCGTCCGGTACATGACCCGAGTTCGTACGGATCGGCACAGCAG 60 consensus_5138#1 ------------GCAGATCGCCCGA-----GGTTTAAGTTCGTACGGATCGGCACAGCAG 43 * * ** *** * ************************ consensus_5138#0 AAAAGGAAAGGTTTTGCGGACTTTTTCGCCTCACGATGGGTACGCAAATGTTTCGTTTGA 120 consensus_5138#1 AAAAGGAAAGGTTTTGCGGACTTTTTCGCCTCACGATGGGTACGCAAATGTTTCGTTTGA 103 ************************************************************ consensus_5138#0 GCTTTAATTGGCGCCCCGCCGACGGGTCGATCGAAAACCATGCATCCGCGGGCACAATCA 180 consensus_5138#1 GCTTTAATTGGCGCCCCGCCGACGGGTCGATCGAAAACCATGCATCCGCGGGCACAATCA 163 ************************************************************ consensus_5138#0 CTTCCTCGGAACCGGAATTTTGCACGCTGGACGATCTATTGCGCTACGACCAGTGTCTGG 240 consensus_5138#1 CTTCCTCGGAACCGGAATTTTGCACGCTGGACGATCTATTGCGCTACGACCAGTGTCTGG 223 ************************************************************ consensus_5138#0 TTCTGTCGGGCAGTGAGGACCAAGAGCCGTGCGAAATGCATCTGGCCATAACCCCATTGT 300 consensus_5138#1 TTCTGTCGGGCAGTGAGGACCAAGAGCCGTGCGAAATGCATCTGGCCATAACCCCATTGT 283 ************************************************************ consensus_5138#0 ACCTGGTACGGGGCGTTTCGATCATCGCCGAATGTCCTGTCGTAGAAGTTTACTATGGCC 360 consensus_5138#1 ACCTGGTACGGGGCGTTTCGATCATCGCCGAATGTCCTGTCGTAGAAGTTTACTATGGCC 343 ************************************************************ consensus_5138#0 GGTTGCGCGAATACAACCGTACCGTGCACGGGGAGCTGCTGTACACGATAGTGGATGGAC 420 consensus_5138#1 GGTTGCGCGAATACAACCGTACCGTGCACGGGGAGCTGCTGTACACGATAGTGGATGGAC 403 ************************************************************ consensus_5138#0 ATGTGTATCGGTACGACTTGAGCATCGAGACGGAGACCAGTGAGCTGCACGTGAAGTTCA 480 consensus_5138#1 ATGTGTATCGGTACGACTTGAGCATCGAGACGGAGACCAGTGAGCTGCACGTGAAGTTCA 463 ************************************************************ consensus_5138#0 TTATGGACGATCCGAGCGAACCTGTATCGCTGTACACCACGCACCTGTACCTGATGCGCA 540 consensus_5138#1 TTATGGACGATCCGAGCGAACCTGTATCGCTGTACACCACGCACCTGTACCTGATGCGCA 523 ************************************************************ consensus_5138#0 ACACAGACCCGTTGCGTGCGATGAGGATGATGATGGCGGAGAGCAAACTCATAAACCCGG 600 consensus_5138#1 ACACAGAACCGTTGCGTGCGATGAGGATGCTGATGGCGGAGAGCAAACTCATTAACC-GG 582 ******* ********************* ********************** **** ** consensus_5138#0 ACGCTGTGCAGCAGCGCCTGCAGGGGGCTATCCTGTCGGAGCGTGCGGAACGGAGCAAAC 660 consensus_5138#1 ACGCTG------------------------------------------------------ 588 ****** consensus_5138#0 ATTTGATACTTGGCTCCATGCTTTCTGCGCAACATAACTTTGAGAACAACAACGCTAGAC 720 consensus_5138#1 ------------------------------------------------------------ consensus_5138#0 TATCATCGATTACAGCTGCAGCAGCAGGAAGCATGCCACTGGACAACATTGACGTTGCAC 780 consensus_5138#1 ------------------------------------------------------------ consensus_5138#0 ATAGCAACGCACAGTCATCGGTTGAAGCGTCCACGCCGTCGAATCACACCCCGGCTGCTA 840 consensus_5138#1 ------------------------------------------------------------ consensus_5138#0 ACAACGACGGCCAATCGGCGGCTGCTGCGCGTCGATGCTCGATAACATCCATGCTGTAAA 900 consensus_5138#1 ------------------------------------------------------------ consensus_5138#0 CAACAACGTTCAATCATCGGCTGGTAATGGCGTTCCTGGGCCGGTACTACCGGATATGTC 960 consensus_5138#1 ------------------------------------------------------------ consensus_5138#0 CAACCTCGCGCTTTCTGTTGCCAATGGGAATATCGAAACCAGGATCAAACAGTACATCGA 1020 consensus_5138#1 ------------------------------------------------------------ consensus_5138#0 CGCCAAATTTGTACAGCTTGAGCATTTTGTCGACAACCGACTGGCGGACCTGGCAGCTCG 1080 consensus_5138#1 ------------------------------------------------------------ consensus_5138#0 GCAAGATCAAAAGCTGGACCGTTTGCTGGAACTGCTACAAGAGCAACGAGGATCGGCCCA 1140 consensus_5138#1 ------------------------------------------------------------ consensus_5138#0 AAATGGATCGCACGGAAATAAGGCGGAACAATAATTTGCGTTGCAATAGTGCCACCACGA 1200 consensus_5138#1 ------------------------------------------------------------ consensus_5138#0 TCTCTCCCTGTGTGGGAAGTACCTTATCTTCCCTGTGGTCTTACATTTTCCGTCCGTGGA 1260 consensus_5138#1 ------------------------------------------------------------ consensus_5138#0 TTATACCCTTGGATGTACAGCTCTCCGACTACACGATGGGAAATTTTAATAGAGGTCCAT 1320 consensus_5138#1 ------------------------------------------------------------ consensus_5138#0 GTCCCATTTTCCTTATACCTCATTTTGAACGAAATAATTATTGGTTTCCTTCGGTAGTGA 1380 consensus_5138#1 ------------------------------------------------------------ consensus_5138#0 GTAGTTTTTAGATTTATTGACACATACAAATA 1412 consensus_5138#1 -------------------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||