These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5139#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1122 fasta sequence [TTGAGATTAATTGGACCGAGATCGGCCTAAACACGCGGTCAAAATTGTTGAAATGGCTGAGATCCACTGGAAGCATTGGAGGGATTTAAAGGAATGTTTGGATTAGGCTAACTCTCTTCTTGCAAGATACTCGACTAAAACATAGGTTACATTACAGGCTGATAATCTTAGTCGGACTTTAGTATTTTAATAGTAATATTTTGCTTCTTTTGTGTAGTAAAACTCTGTCTAATAATTGACCATATGCAAGAGTTCAAACACACGCTATCAATTGATTAGTAAATGTATGTAAGATAAGGTAATAAGGCGTAAACGACACGAGACGTTTGAACTTCAAAAGCTGAACACGATTTGGAAAACCACACATAATGTACAGTTTTTTTTTTTAATTTTTGAATCGGTACGTACAATAGTGTTTGAAGAAATTAGAAGTATTTTTCACTACATGCAGAAATAGATTTAAAAGCAAATCACATAACATGAACACTTCCTATTCAACGGAACAAACCTCAAACAAGTGGGGAACAACCTTAAACCAAGCTACAATTCAGGGTTTCTTGTCCAATCTATGCGCACATAAATTATTGCTTAAAAGAAGTTTTTAACAAATTATCACACATTGCAAATCCGCCAAAAAAATTGTATTCCACATGCATGATTTTGTCTTTGCAGCACATATCCATAGCAGTGCACTACAATGGGAATGTGAAACAATAACATATTGTGAGCGGAGTTACAATGTGAGAGCGGACGTTTGCAAACATCTCGTATTTAATGAAACATGCTATCCACATTGGAAAGTGTTTTGGAAACCCTGTTAGAAACTTGCAATTATAGAATTCATATTCACTCTTATTCATATATCTCCACCGGGGCGTACTATTCATGTCGATTCTCGTTGCAAAGTAATCGTAAATGAGCTCTATTTTCACAAATTACATTGTGAAGCTTTTATCTCCATCTCTCTTCTCTTTCTCTCTATCTCTCTCTCTCTCTCTCTAACTTTCTCTCTATTCGTTCTTGCTAAATAAATCTAAACGCTTAATAAAGTGGCAATTTCAACAACAATCTTTCGGCTTCCCAAAGGAACATGGCAGCAACCTGCTCAATCGTCATCCAGCA] [-] EMBL BX608574 [TTGAGATTAATTGGACCGAGATCGGCCTAAACACGCGGTCAAAATTGTTGAAATGGCTGAGATCCACTGGAAGCATTGGAGGGATTTAAAGGAATGTTTGGATTAGGCTAACTCTCTTCTTGCAAGATACTCGACTAAAACATAGGTTACATTACAGGCTGATAATCTTAGTCGGACTTTAGTATTTTAATAGTAATATTTTGCTTCTTTTGTGTAGTAAAACTCTGTCTAATAATTGACCATATGCAAGAGTTCAAACACACGCTATCAATTGATTAGTAAATGTATGTAAGATAAGGTAATAAGGCGTAAACGACACGAGACGTTTGAACTTCAAAAGCTGAACACGATTTGGAAAACCACACATAATGTACAGTTTTTTTTTTTAATTTTTGAATCGGTACGTACAATAGTGTTTGAAGAAATTAGAAGTATTTTTCACTACATGCAGAAATAGATTTAAAAGCAAATC ] [+] EMBL CNS08THV [ CAAAAGCTGAACACGATTTGGAAAACCACACATAATGTACAG TTTTCTTTTTAATTTTCGAATCGGTACGTGCAATAGTGTATGAAGAAATTAGAAGTATTTTTCACTACATGCAGAAATAGATTTAAAAGCAAATCACATAACATGAACACTTCCTATTCAACGGAACAAACCTCAAACAAGTGGGGAACAACCTTAAACCAAGCTACAATTCAGGGTTTCTTGTCCAATCTATGCGCACATAAATTATTGCTTAAAAGAAGTTTTTAACAAATTATCACACATTGCAAATCCGCCAAAAAAATTGTATTCCACATGCATGATTTTGTCTTTGCAGCACATATCCATAGCAGTGCACTACAATGGGAATGTGAAACAATAACATATTGTGAGCGGAGTTACAATGTGAGAGCGGACGTTTGCAAACATCTCGTATTTAATGAAACATGCTATCCACATTGGAAAGTGTTTTGGAAACCCTGTTAGAAACTTGCAATTATAGAATTCATATTCACTCTTATTCATATATCTCCACCGGGGCGTACTATTCATGTCGATTCTCGTTGCAAAGTAATCGTAAATGAGCTCTATTTTCACAAATTACATTGTGAAGCTTTTATCTCCATCTCTCTTCTCTTTCTCTCTATCTCTCTCTCTCTCTCTCTAACTTTCTCTCTATTCGTTCTTGCTAAATAAATCTAAACGCTTAATAAAGTGGCAATTTCAACAACAATCTTTCGGCTTCCCAAAGGAACATGGCAGCAACCTGCTCAATCGTCATCCAGCA] consensusID : consensus_5139#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 632 fasta sequence [TCTTGTCCAATCTATGCGCAGCATAAATTATTGCTTAAAAGAAGTTTTTAACAAATTATCACACATTGCAAATCCGCCAAAAAAATTGTATTCCACATGCATGATTTTGTCTTTCCAGCACATATCCATAGCAGTGCACTACAATGGGAATGTGAAACAATAACATATTGTGACGGAGTTACAATGTGAGACGGACGTTTGCAAACATCTCGTATTCAATGAAATATGCTATCCACATTGGAAAGTGTTTTGGAAACCCTGTTAGAAACTTGCAATTATAGAATTCATATTCACTCTTATTCATATATCTCCACCGAGGCGTTGCCTATCATGTCGATTCTCGTTGCAAGGTAATCGTAAATGAGCTCTATTTTCACAAATTACATTGTGAAGCTTTTATCTCCATTTCTCTTCTCTTTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTAACTTTCTCTCTATTCGTTCTTGCTAAATAAATCTAAACGCTTAATAAAGTGGCAATTTCAACAACAATCTTTCGGCTTCCCAAAGGAACATGGCAGCAACCTGCTCAATCGTCATCCAGCATCTCGAGGAATGCCTTTGGTACAAGCCCTTTGAGTAACCCTTGCTTCGG] [-] EMBL BM635467 [TCTTGTCCAATCTATGCGCAGCATAAATTATTGCTTAAAAGAAGTTTTTAACAAATTATCACACATTGCAAATCCGCCAAAAAAATTGTATTCCACATGCATGATTTTGTCTTTCCAGCACATATCCATAGCAGTGCACTACAATGGGAATGTGAAACAATAACATATTGTGACGGAGTTACAATGTGAGACGGACGTTTGCAAACATCTCGTATTCAATGAAATATGCTATCCACATTGGAAAGTGTTTTGGAAACCCTGTTAGAAACTTGCAATTATAGAATTCATATTCACTCTTATTCATATATCTCCACCGAGGCGTTGCCTATCATGTCGATTCTCGTTGCAAGGTAATCGTAAATGAGCTCTATTTTCACAAATTACATTGTGAAGCTTTTATCTCCATTTCTCTTCTCTTTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTAACTTTCTCTCTATTCGTTCTTGCTAAATAAATCTAAACGCTTAATAAAGTGGCAATTTCAACAACAATCTTTCGGCTTCCCAAAGGAACATGGCAGCAACCTGCTCAATCGTCATCCAGCATCTCGAGGAATGCCTTTGGTACAAGCCCTTTGAGTAACCCTTGCTTCGG] consensusID : consensus_5139#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 601 fasta sequence [TGTGTAGTAAAACTCTGTTAATANTGGACCATATGCACGAGTTCAAACACACGCTATCAATTGATTAGTAAATGTATATAAGATAAGGTAATAAGGCGTAAACGACACGAGACGTTTTGAACTTCGANAAGCTGACACGATTTGGGAAACCACACATAATGTACAGTTTTCTTTTTAATTTTCGAATCGGTACGTGCAATAGTGTATGAAGAAATTAGAAGTATTTTTCACTACATNCAGTAAATAGATTTAAAAAGCAGAACTCACATAACATGAACACTTCCTATTCAACGGAACAAACCTCAAACAAGTGGGGAACAACCTTAAACCAAGCTACAATTCAGGGTTTCTTGTCCAATCTATGCGCAGCATAAATTATGGCTTAAAAGAAGTTTTTAACAAATTATCACACATTGCAAATCCGCCAAAAAAATTGTATTCCACATGCATGATTTTGTCTTTGCAGCACATATCCATAGCAGTGCACTACAATGGGAATGTGAAACAATAACATATTGTGACGGAGTTACAATGTGAGACGGACGTTTGCAAACATCTCGTATTAATGNAATATGCTATCCACATTGGAAANCCTCGGGCG] [-] EMBL AL693683 [TGTGTAGTAAAACTCTGTTAATANTGGACCATATGCACGAGTTCAAACACACGCTATCAATTGATTAGTAAATGTATATAAGATAAGGTAATAAGGCGTAAACGACACGAGACGTTTTGAACTTCGANAAGCTGACACGATTTGGGAAACCACACATAATGTACAGTTTTCTTTTTAATTTTCGAATCGGTACGTGCAATAGTGTATGAAGAAATTAGAAGTATTTTTCACTACATNCAGTAAATAGATTTAAAAAGCAGAACTCACATAACATGAACACTTCCTATTCAACGGAACAAACCTCAAACAAGTGGGGAACAACCTTAAACCAAGCTACAATTCAGGGTTTCTTGTCCAATCTATGCGCAGCATAAATTATGGCTTAAAAGAAGTTTTTAACAAATTATCACACATTGCAAATCCGCCAAAAAAATTGTATTCCACATGCATGATTTTGTCTTTGCAGCACATATCCATAGCAGTGCACTACAATGGGAATGTGAAACAATAACATATTGTGACGGAGTTACAATGTGAGACGGACGTTTGCAAACATCTCGTATTAATGNAATATGCTATCCACATTGGAAANCCTCGGGCG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_5139#0 TTGAGATTAATTGGACCGAGATCGGCCTAAACACGCGGTCAAAATTGTTGAAATGGCTGA 60 consensus_5139#2 ------------------------------------------------------------ consensus_5139#1 ------------------------------------------------------------ consensus_5139#0 GATCCACTGGAAGCATTGGAGGGATTTAAAGGAATGTTTGGATTAGGCTAACTCTCTTCT 120 consensus_5139#2 ------------------------------------------------------------ consensus_5139#1 ------------------------------------------------------------ consensus_5139#0 TGCAAGATACTCGACTAAAACATAGGTTACATTACAGGCTGATAATCTTAGTCGGACTTT 180 consensus_5139#2 ------------------------------------------------------------ consensus_5139#1 ------------------------------------------------------------ consensus_5139#0 AGTATTTTAATAGTAATATTTTGCTTCTTTTGTGTAGTAAAACTCTGTCTAATAATTGAC 240 consensus_5139#2 ------------------------------TGTGTAGTAAAACTCTGT-TAATANTGGAC 29 consensus_5139#1 ----------------TCTTGTCCAATCTATGCGCAGCATAAAT-TATTGCTTAAAAGAA 43 ** * ** * ** * * * ** ** consensus_5139#0 CATATGCAAGAGTTCAAACACACGCTATCAATTGATTAGTAAATGTATGTAAGATAAG-G 299 consensus_5139#2 CATATGCACGAGTTCAAACACACGCTATCAATTGATTAGTAAATGTATATAAGATAAG-G 88 consensus_5139#1 GTTTTTAACAAATT--ATCACACATTGCAAATCCGCCAAAAAAATTGTATTCCACATGCA 101 * * * * ** * ***** * *** * *** * * * * * * consensus_5139#0 TAATAAGGCGTAAACGACACGAGACGTTT-GAACTTCAAAAGCTGAACACGATTTGGAA- 357 consensus_5139#2 TAATAAGGCGTAAACGACACGAGACGTTTTGAACTTCGANAAGCTGACACGATTTGGGA- 147 consensus_5139#1 TGATTTTGTCTTTCCAGCAC-ATATCCATAGCAGTGCACTACAATGGGA--ATGTGAAAC 158 * ** * * * *** * * * * * * * * * ** ** * consensus_5139#0 AACCACACATAATG-TACAGTTTTTTTTTTTAATTTTTGAATCGGTACGTACAATAGTGT 416 consensus_5139#2 AACCACACATAATG-TACAGTTTTCTTTTT-AATTTTCGAATCGGTACGTGCAATAGTGT 205 consensus_5139#1 AATAACATATTGTGACGGAGTTACAATGTGAGACGGACGTTTGCAAACATCTCGTATTCA 218 ** *** ** ** **** * * * * * ** * ** * consensus_5139#0 TTGAAGAAATTAGAAGTATTTTTCACTACATGCAG-AAATAGATTTAAAA-GCAAA--TC 472 consensus_5139#2 ATGAAGAAATTAGAAGTATTTTTCACTACATNCAGTAAATAGATTTAAAAAGCAGAACTC 265 consensus_5139#1 ATGAA-ATATGCTATCCACATTGGAAAGTGTTTTGGAAACCCTGTTAGAAACTTGCAATT 277 **** * ** * * ** * * * *** *** ** * consensus_5139#0 ACATAACATGAACACTTCCTATTCAACGGAACAAACCTCAAACAAGTGGGGAACAACCTT 532 consensus_5139#2 ACATAACATGAACACTTCCTATTCAACGGAACAAACCTCAAACAAGTGGGGAACAACCTT 325 consensus_5139#1 ATAGAATTCATATTCACTCTTATTCATATATCT--CCACCGAGGCGTTGCCTATCATGTC 335 * * ** * * ** * * * * ** * * ** * * * * consensus_5139#0 AAACCAAGCTACAATTCAGGGTTTCTTGTCCAATCTATGCGCA-CATAAATTATTG---- 587 consensus_5139#2 AAACCAAGCTACAATTCAGGGTTTCTTGTCCAATCTATGCGCAGCATAAATTATGG---- 381 consensus_5139#1 GATTCTCGTTGCAAGGTAATCGTAAATGAGCTCTATTTTCACAAATTACATTGTGAAGCT 395 * * * * *** * * ** * * * * * ** ** *** * consensus_5139#0 CTTAAAAGAAGTTTTTAACAAATTATCACACATTGCAAATCCGCCAAAAAAATTGTATTC 647 consensus_5139#2 CTTAAAAGAAGTTTTTAACAAATTATCACACATTGCAAATCCGCCAAAAAAATTGTATTC 441 consensus_5139#1 TTTATCTCCATTTCTCTTCTCTTTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCT 455 *** * ** * * ** ** * * * ** * * * * consensus_5139#0 CACATGCATGAT-------TTTGTCTTTGCAGCACATATCCATAGCAGTGCACTACAATG 700 consensus_5139#2 CACATGCATGAT-------TTTGTCTTTGCAGCACATATCCATAGCAGTGCACTACAATG 494 consensus_5139#1 CTCTCTAACTTTCTCTCTATTCGTTCTTGCTAAATAAATCTAAAC--GCTTAATAAAGTG 513 * * * * ** ** **** * * *** * * * * ** * ** consensus_5139#0 GGAATGTGAAACAATAACATATTG--TGAGCGGAGTTACAATGTGAGAG------CGGAC 752 consensus_5139#2 GGAATGTGAAACAATAACATATTG--TGA-CGGAGTTACAATGTGAGA-------CGGAC 544 consensus_5139#1 GCAATTTCAA-CAACAATCTTTCGGCTTCCCAAAGGAACATGGCAGCAACCTGCTCAATC 572 * *** * ** *** ** * * * * * ** *** * * * * consensus_5139#0 GTTTGCAAACATCTCGTATTTAATGAAACATGCTATCCACATTGGAAAGTGTTTTGGAAA 812 consensus_5139#2 GTTTGCAAACATCTCGTATT-AATGNAATATGCTATCCACATTGGAAANCCTCGGGCG-- 601 consensus_5139#1 GTCATCCAGCATCTCGAGGAATGCCTTTGGTACAAGCCCTTTGAGTAACCCTTGCTTCGG 632 ** * * ******* * * * ** * * ** * consensus_5139#0 CCCTGTTAGAAACTTGCAATTATAGAATTCATATTCACTCTTATTCATATATCTCCACCG 872 consensus_5139#2 ------------------------------------------------------------ consensus_5139#1 ------------------------------------------------------------ consensus_5139#0 GGGCGTACTATTCATGTCGATTCTCGTTGCAAAGTAATCGTAAATGAGCTCTATTTTCAC 932 consensus_5139#2 ------------------------------------------------------------ consensus_5139#1 ------------------------------------------------------------ consensus_5139#0 AAATTACATTGTGAAGCTTTTATCTCCATCTCTCTTCTCTTTCTCTCTATCTCTCTCTCT 992 consensus_5139#2 ------------------------------------------------------------ consensus_5139#1 ------------------------------------------------------------ consensus_5139#0 CTCTCTCTAACTTTCTCTCTATTCGTTCTTGCTAAATAAATCTAAACGCTTAATAAAGTG 1052 consensus_5139#2 ------------------------------------------------------------ consensus_5139#1 ------------------------------------------------------------ consensus_5139#0 GCAATTTCAACAACAATCTTTCGGCTTCCCAAAGGAACATGGCAGCAACCTGCTCAATCG 1112 consensus_5139#2 ------------------------------------------------------------ consensus_5139#1 ------------------------------------------------------------ consensus_5139#0 TCATCCAGCA 1122 consensus_5139#2 ---------- consensus_5139#1 ---------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||