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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5139#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1122 fasta sequence
[TTGAGATTAATTGGACCGAGATCGGCCTAAACACGCGGTCAAAATTGTTGAAATGGCTGAGATCCACTGGAAGCATTGGAGGGATTTAAAGGAATGTTTGGATTAGGCTAACTCTCTTCTTGCAAGATACTCGACTAAAACATAGGTTACATTACAGGCTGATAATCTTAGTCGGACTTTAGTATTTTAATAGTAATATTTTGCTTCTTTTGTGTAGTAAAACTCTGTCTAATAATTGACCATATGCAAGAGTTCAAACACACGCTATCAATTGATTAGTAAATGTATGTAAGATAAGGTAATAAGGCGTAAACGACACGAGACGTTTGAACTTCAAAAGCTGAACACGATTTGGAAAACCACACATAATGTACAGTTTTTTTTTTTAATTTTTGAATCGGTACGTACAATAGTGTTTGAAGAAATTAGAAGTATTTTTCACTACATGCAGAAATAGATTTAAAAGCAAATCACATAACATGAACACTTCCTATTCAACGGAACAAACCTCAAACAAGTGGGGAACAACCTTAAACCAAGCTACAATTCAGGGTTTCTTGTCCAATCTATGCGCACATAAATTATTGCTTAAAAGAAGTTTTTAACAAATTATCACACATTGCAAATCCGCCAAAAAAATTGTATTCCACATGCATGATTTTGTCTTTGCAGCACATATCCATAGCAGTGCACTACAATGGGAATGTGAAACAATAACATATTGTGAGCGGAGTTACAATGTGAGAGCGGACGTTTGCAAACATCTCGTATTTAATGAAACATGCTATCCACATTGGAAAGTGTTTTGGAAACCCTGTTAGAAACTTGCAATTATAGAATTCATATTCACTCTTATTCATATATCTCCACCGGGGCGTACTATTCATGTCGATTCTCGTTGCAAAGTAATCGTAAATGAGCTCTATTTTCACAAATTACATTGTGAAGCTTTTATCTCCATCTCTCTTCTCTTTCTCTCTATCTCTCTCTCTCTCTCTCTAACTTTCTCTCTATTCGTTCTTGCTAAATAAATCTAAACGCTTAATAAAGTGGCAATTTCAACAACAATCTTTCGGCTTCCCAAAGGAACATGGCAGCAACCTGCTCAATCGTCATCCAGCA]
[-] EMBL BX608574 [TTGAGATTAATTGGACCGAGATCGGCCTAAACACGCGGTCAAAATTGTTGAAATGGCTGAGATCCACTGGAAGCATTGGAGGGATTTAAAGGAATGTTTGGATTAGGCTAACTCTCTTCTTGCAAGATACTCGACTAAAACATAGGTTACATTACAGGCTGATAATCTTAGTCGGACTTTAGTATTTTAATAGTAATATTTTGCTTCTTTTGTGTAGTAAAACTCTGTCTAATAATTGACCATATGCAAGAGTTCAAACACACGCTATCAATTGATTAGTAAATGTATGTAAGATAAGGTAATAAGGCGTAAACGACACGAGACGTTTGAACTTCAAAAGCTGAACACGATTTGGAAAACCACACATAATGTACAGTTTTTTTTTTTAATTTTTGAATCGGTACGTACAATAGTGTTTGAAGAAATTAGAAGTATTTTTCACTACATGCAGAAATAGATTTAAAAGCAAATC ]
[+] EMBL CNS08THV [ CAAAAGCTGAACACGATTTGGAAAACCACACATAATGTACAG TTTTCTTTTTAATTTTCGAATCGGTACGTGCAATAGTGTATGAAGAAATTAGAAGTATTTTTCACTACATGCAGAAATAGATTTAAAAGCAAATCACATAACATGAACACTTCCTATTCAACGGAACAAACCTCAAACAAGTGGGGAACAACCTTAAACCAAGCTACAATTCAGGGTTTCTTGTCCAATCTATGCGCACATAAATTATTGCTTAAAAGAAGTTTTTAACAAATTATCACACATTGCAAATCCGCCAAAAAAATTGTATTCCACATGCATGATTTTGTCTTTGCAGCACATATCCATAGCAGTGCACTACAATGGGAATGTGAAACAATAACATATTGTGAGCGGAGTTACAATGTGAGAGCGGACGTTTGCAAACATCTCGTATTTAATGAAACATGCTATCCACATTGGAAAGTGTTTTGGAAACCCTGTTAGAAACTTGCAATTATAGAATTCATATTCACTCTTATTCATATATCTCCACCGGGGCGTACTATTCATGTCGATTCTCGTTGCAAAGTAATCGTAAATGAGCTCTATTTTCACAAATTACATTGTGAAGCTTTTATCTCCATCTCTCTTCTCTTTCTCTCTATCTCTCTCTCTCTCTCTCTAACTTTCTCTCTATTCGTTCTTGCTAAATAAATCTAAACGCTTAATAAAGTGGCAATTTCAACAACAATCTTTCGGCTTCCCAAAGGAACATGGCAGCAACCTGCTCAATCGTCATCCAGCA]
consensusID : consensus_5139#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 632 fasta sequence
[TCTTGTCCAATCTATGCGCAGCATAAATTATTGCTTAAAAGAAGTTTTTAACAAATTATCACACATTGCAAATCCGCCAAAAAAATTGTATTCCACATGCATGATTTTGTCTTTCCAGCACATATCCATAGCAGTGCACTACAATGGGAATGTGAAACAATAACATATTGTGACGGAGTTACAATGTGAGACGGACGTTTGCAAACATCTCGTATTCAATGAAATATGCTATCCACATTGGAAAGTGTTTTGGAAACCCTGTTAGAAACTTGCAATTATAGAATTCATATTCACTCTTATTCATATATCTCCACCGAGGCGTTGCCTATCATGTCGATTCTCGTTGCAAGGTAATCGTAAATGAGCTCTATTTTCACAAATTACATTGTGAAGCTTTTATCTCCATTTCTCTTCTCTTTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTAACTTTCTCTCTATTCGTTCTTGCTAAATAAATCTAAACGCTTAATAAAGTGGCAATTTCAACAACAATCTTTCGGCTTCCCAAAGGAACATGGCAGCAACCTGCTCAATCGTCATCCAGCATCTCGAGGAATGCCTTTGGTACAAGCCCTTTGAGTAACCCTTGCTTCGG]
[-] EMBL BM635467 [TCTTGTCCAATCTATGCGCAGCATAAATTATTGCTTAAAAGAAGTTTTTAACAAATTATCACACATTGCAAATCCGCCAAAAAAATTGTATTCCACATGCATGATTTTGTCTTTCCAGCACATATCCATAGCAGTGCACTACAATGGGAATGTGAAACAATAACATATTGTGACGGAGTTACAATGTGAGACGGACGTTTGCAAACATCTCGTATTCAATGAAATATGCTATCCACATTGGAAAGTGTTTTGGAAACCCTGTTAGAAACTTGCAATTATAGAATTCATATTCACTCTTATTCATATATCTCCACCGAGGCGTTGCCTATCATGTCGATTCTCGTTGCAAGGTAATCGTAAATGAGCTCTATTTTCACAAATTACATTGTGAAGCTTTTATCTCCATTTCTCTTCTCTTTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTAACTTTCTCTCTATTCGTTCTTGCTAAATAAATCTAAACGCTTAATAAAGTGGCAATTTCAACAACAATCTTTCGGCTTCCCAAAGGAACATGGCAGCAACCTGCTCAATCGTCATCCAGCATCTCGAGGAATGCCTTTGGTACAAGCCCTTTGAGTAACCCTTGCTTCGG]
consensusID : consensus_5139#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 601 fasta sequence
[TGTGTAGTAAAACTCTGTTAATANTGGACCATATGCACGAGTTCAAACACACGCTATCAATTGATTAGTAAATGTATATAAGATAAGGTAATAAGGCGTAAACGACACGAGACGTTTTGAACTTCGANAAGCTGACACGATTTGGGAAACCACACATAATGTACAGTTTTCTTTTTAATTTTCGAATCGGTACGTGCAATAGTGTATGAAGAAATTAGAAGTATTTTTCACTACATNCAGTAAATAGATTTAAAAAGCAGAACTCACATAACATGAACACTTCCTATTCAACGGAACAAACCTCAAACAAGTGGGGAACAACCTTAAACCAAGCTACAATTCAGGGTTTCTTGTCCAATCTATGCGCAGCATAAATTATGGCTTAAAAGAAGTTTTTAACAAATTATCACACATTGCAAATCCGCCAAAAAAATTGTATTCCACATGCATGATTTTGTCTTTGCAGCACATATCCATAGCAGTGCACTACAATGGGAATGTGAAACAATAACATATTGTGACGGAGTTACAATGTGAGACGGACGTTTGCAAACATCTCGTATTAATGNAATATGCTATCCACATTGGAAANCCTCGGGCG]
[-] EMBL AL693683 [TGTGTAGTAAAACTCTGTTAATANTGGACCATATGCACGAGTTCAAACACACGCTATCAATTGATTAGTAAATGTATATAAGATAAGGTAATAAGGCGTAAACGACACGAGACGTTTTGAACTTCGANAAGCTGACACGATTTGGGAAACCACACATAATGTACAGTTTTCTTTTTAATTTTCGAATCGGTACGTGCAATAGTGTATGAAGAAATTAGAAGTATTTTTCACTACATNCAGTAAATAGATTTAAAAAGCAGAACTCACATAACATGAACACTTCCTATTCAACGGAACAAACCTCAAACAAGTGGGGAACAACCTTAAACCAAGCTACAATTCAGGGTTTCTTGTCCAATCTATGCGCAGCATAAATTATGGCTTAAAAGAAGTTTTTAACAAATTATCACACATTGCAAATCCGCCAAAAAAATTGTATTCCACATGCATGATTTTGTCTTTGCAGCACATATCCATAGCAGTGCACTACAATGGGAATGTGAAACAATAACATATTGTGACGGAGTTACAATGTGAGACGGACGTTTGCAAACATCTCGTATTAATGNAATATGCTATCCACATTGGAAANCCTCGGGCG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_5139#0 TTGAGATTAATTGGACCGAGATCGGCCTAAACACGCGGTCAAAATTGTTGAAATGGCTGA 60
consensus_5139#2 ------------------------------------------------------------
consensus_5139#1 ------------------------------------------------------------
consensus_5139#0 GATCCACTGGAAGCATTGGAGGGATTTAAAGGAATGTTTGGATTAGGCTAACTCTCTTCT 120
consensus_5139#2 ------------------------------------------------------------
consensus_5139#1 ------------------------------------------------------------
consensus_5139#0 TGCAAGATACTCGACTAAAACATAGGTTACATTACAGGCTGATAATCTTAGTCGGACTTT 180
consensus_5139#2 ------------------------------------------------------------
consensus_5139#1 ------------------------------------------------------------
consensus_5139#0 AGTATTTTAATAGTAATATTTTGCTTCTTTTGTGTAGTAAAACTCTGTCTAATAATTGAC 240
consensus_5139#2 ------------------------------TGTGTAGTAAAACTCTGT-TAATANTGGAC 29
consensus_5139#1 ----------------TCTTGTCCAATCTATGCGCAGCATAAAT-TATTGCTTAAAAGAA 43
** * ** * ** * * * ** **
consensus_5139#0 CATATGCAAGAGTTCAAACACACGCTATCAATTGATTAGTAAATGTATGTAAGATAAG-G 299
consensus_5139#2 CATATGCACGAGTTCAAACACACGCTATCAATTGATTAGTAAATGTATATAAGATAAG-G 88
consensus_5139#1 GTTTTTAACAAATT--ATCACACATTGCAAATCCGCCAAAAAAATTGTATTCCACATGCA 101
* * * * ** * ***** * *** * *** * * * * * *
consensus_5139#0 TAATAAGGCGTAAACGACACGAGACGTTT-GAACTTCAAAAGCTGAACACGATTTGGAA- 357
consensus_5139#2 TAATAAGGCGTAAACGACACGAGACGTTTTGAACTTCGANAAGCTGACACGATTTGGGA- 147
consensus_5139#1 TGATTTTGTCTTTCCAGCAC-ATATCCATAGCAGTGCACTACAATGGGA--ATGTGAAAC 158
* ** * * * *** * * * * * * * * * ** ** *
consensus_5139#0 AACCACACATAATG-TACAGTTTTTTTTTTTAATTTTTGAATCGGTACGTACAATAGTGT 416
consensus_5139#2 AACCACACATAATG-TACAGTTTTCTTTTT-AATTTTCGAATCGGTACGTGCAATAGTGT 205
consensus_5139#1 AATAACATATTGTGACGGAGTTACAATGTGAGACGGACGTTTGCAAACATCTCGTATTCA 218
** *** ** ** **** * * * * * ** * ** *
consensus_5139#0 TTGAAGAAATTAGAAGTATTTTTCACTACATGCAG-AAATAGATTTAAAA-GCAAA--TC 472
consensus_5139#2 ATGAAGAAATTAGAAGTATTTTTCACTACATNCAGTAAATAGATTTAAAAAGCAGAACTC 265
consensus_5139#1 ATGAA-ATATGCTATCCACATTGGAAAGTGTTTTGGAAACCCTGTTAGAAACTTGCAATT 277
**** * ** * * ** * * * *** *** ** *
consensus_5139#0 ACATAACATGAACACTTCCTATTCAACGGAACAAACCTCAAACAAGTGGGGAACAACCTT 532
consensus_5139#2 ACATAACATGAACACTTCCTATTCAACGGAACAAACCTCAAACAAGTGGGGAACAACCTT 325
consensus_5139#1 ATAGAATTCATATTCACTCTTATTCATATATCT--CCACCGAGGCGTTGCCTATCATGTC 335
* * ** * * ** * * * * ** * * ** * * * *
consensus_5139#0 AAACCAAGCTACAATTCAGGGTTTCTTGTCCAATCTATGCGCA-CATAAATTATTG---- 587
consensus_5139#2 AAACCAAGCTACAATTCAGGGTTTCTTGTCCAATCTATGCGCAGCATAAATTATGG---- 381
consensus_5139#1 GATTCTCGTTGCAAGGTAATCGTAAATGAGCTCTATTTTCACAAATTACATTGTGAAGCT 395
* * * * *** * * ** * * * * * ** ** *** *
consensus_5139#0 CTTAAAAGAAGTTTTTAACAAATTATCACACATTGCAAATCCGCCAAAAAAATTGTATTC 647
consensus_5139#2 CTTAAAAGAAGTTTTTAACAAATTATCACACATTGCAAATCCGCCAAAAAAATTGTATTC 441
consensus_5139#1 TTTATCTCCATTTCTCTTCTCTTTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCT 455
*** * ** * * ** ** * * * ** * * * *
consensus_5139#0 CACATGCATGAT-------TTTGTCTTTGCAGCACATATCCATAGCAGTGCACTACAATG 700
consensus_5139#2 CACATGCATGAT-------TTTGTCTTTGCAGCACATATCCATAGCAGTGCACTACAATG 494
consensus_5139#1 CTCTCTAACTTTCTCTCTATTCGTTCTTGCTAAATAAATCTAAAC--GCTTAATAAAGTG 513
* * * * ** ** **** * * *** * * * * ** * **
consensus_5139#0 GGAATGTGAAACAATAACATATTG--TGAGCGGAGTTACAATGTGAGAG------CGGAC 752
consensus_5139#2 GGAATGTGAAACAATAACATATTG--TGA-CGGAGTTACAATGTGAGA-------CGGAC 544
consensus_5139#1 GCAATTTCAA-CAACAATCTTTCGGCTTCCCAAAGGAACATGGCAGCAACCTGCTCAATC 572
* *** * ** *** ** * * * * * ** *** * * * *
consensus_5139#0 GTTTGCAAACATCTCGTATTTAATGAAACATGCTATCCACATTGGAAAGTGTTTTGGAAA 812
consensus_5139#2 GTTTGCAAACATCTCGTATT-AATGNAATATGCTATCCACATTGGAAANCCTCGGGCG-- 601
consensus_5139#1 GTCATCCAGCATCTCGAGGAATGCCTTTGGTACAAGCCCTTTGAGTAACCCTTGCTTCGG 632
** * * ******* * * * ** * * ** *
consensus_5139#0 CCCTGTTAGAAACTTGCAATTATAGAATTCATATTCACTCTTATTCATATATCTCCACCG 872
consensus_5139#2 ------------------------------------------------------------
consensus_5139#1 ------------------------------------------------------------
consensus_5139#0 GGGCGTACTATTCATGTCGATTCTCGTTGCAAAGTAATCGTAAATGAGCTCTATTTTCAC 932
consensus_5139#2 ------------------------------------------------------------
consensus_5139#1 ------------------------------------------------------------
consensus_5139#0 AAATTACATTGTGAAGCTTTTATCTCCATCTCTCTTCTCTTTCTCTCTATCTCTCTCTCT 992
consensus_5139#2 ------------------------------------------------------------
consensus_5139#1 ------------------------------------------------------------
consensus_5139#0 CTCTCTCTAACTTTCTCTCTATTCGTTCTTGCTAAATAAATCTAAACGCTTAATAAAGTG 1052
consensus_5139#2 ------------------------------------------------------------
consensus_5139#1 ------------------------------------------------------------
consensus_5139#0 GCAATTTCAACAACAATCTTTCGGCTTCCCAAAGGAACATGGCAGCAACCTGCTCAATCG 1112
consensus_5139#2 ------------------------------------------------------------
consensus_5139#1 ------------------------------------------------------------
consensus_5139#0 TCATCCAGCA 1122
consensus_5139#2 ----------
consensus_5139#1 ----------
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||