These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5147#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1082 fasta sequence [TGGAGCATCACTACCCAGCACACAGGAATCGATTAATCAGCCCGCAGT-CGTAATGCTTCCGAAGACAAAGGAAAGTCCTCTAGGAGCTACATCAACCAGCGCATTGGAACTGCTAAAACAACCTGCTGTCGGTATGGATCGAAAGACTA-AAGAAAGCCCTCTTGGAGCATCATTATCCAGCGCGCAGGAATCGATTATTAAGCCCGCAGTCGTAATGCATCCGAAGATGAAGGAAAGTCTTCTTGGAGCATCACTACCCAGCACACAGGAATCGATTAATCAGCCCGCAGTCGTAATGCTTCCGAAGACAAAGGAAAGTCCTCTAGGAGCTACATCAATCAGCGCATTGGAACTGCTAAAACAACCTGCAGTCGGTATGGATCGGAAGACAAAAGAAAGTCCTCTTGGAGCATCATTATCCAGCGCACTGGAATCGATTGCTCAGCCCGCAGTCGTAATGCATCCGAAGACGAGGGCGAGTCCTCTTGAAGCATCAACCAGCACGCAGGAATCGATTACTCAGTCCGCAGTCGAAATGCATCCGAAGATGAAGGAATGTCTTCTTGGAGCATCACTACCCAGCGCACAGGAANCGATTAATCAGCCCGCAGTCGTAATGCTTCCGAAGAAGAANGCAAGTCCTCTGGGAGCTACATCGTCCAGTGNCCCGGAACCGCTTAAACNATCTGCCGTCGGTATGAATNCCAAGACGAANGAAATTCTTCCAGGANGAGCTGCTTTAACCAGCGCACCGAAACACCTTAACCCATTCGCTGTCGGTATGAATCCCAAGACGAAAGAAATTCTTCCTGGAGGTGCTACATTAACCAGCGTTACGGGACTGCTTATGCAATCCGCTGTCTATATGAATCCCAAGACAAAGGAAATTCTCCCTGGAGGTGCTACATTAACCAGCGCAACGGGATCGCTTATACAGCCCACTATCGCTATGAATCCGAAAACGAAGGAAAGTCTTCTTGCAACGACATCCACCACCAGCAGCCCGCGTGAATCGTTAAACCAACCCAACGCCATTGTTATAGAAACCGAAAAAAAAAATTACAACAAAAGGCAGCATGTGC] [+] EMBL BX622370 [TGGAGCATCACTACCCAGCACACAGGAATCGATTAATCAGCCCGCAGT CGTAATGCTTCCGAAGACAAAGGAAAGTCCTCTAGGAGCTACATCAACCAGCGCATTGGAACTGCTAAAACAACCTGCTGTCGGTATGGATCGAAAGACTA AAGAAAGCCCTCTTGGAGCATCATTATCCAGCGCGCAGGAATCGATTATTAAGCCCGCAGTCGTAATGCATCCGAAGATGAAGGAAAGTCTTCTTGGAGCATCACTACCCAGCACACAGGAATCGATTAATCAGCCCGCAGTCGTAATGCTTCCGAAGACAAAGGAAAGTCCTCTAGGAGCTACATCAATCAGCGCATTGGAACTGCTAAAACAACCTGCAGTCGGTATGGATCGGAAGACAAAAGAAAGTCCTCTTGGAGCATCATTATCCAGCGCACTGGAATCGATTGCTCAGCCCGCAGTCGTAATGCATCCGAAGACGAGGGCGAGTCCTCTTGAAGCATCAACCAGCACGCAGGAATCGATTACTCAGTCCGCAGTCGAAATGCATCCGAAGATGAAGGAATGTCTTCTTGGAGCATCACTACCCAGCGCACAGGAANCGATTAATCAGCCCGCAGTCGTAATGCTTCCGAAGAAGAANGCAAGTCCTCTGGGAGCTACATCGTCCAGTGNCCCGGAACCGCTTAAACNATCTGCCGTCGGTATGAATNCCAAGACGAANGAAATTCTTCCAGGANGAGCTGCTTTAACCAGCGCACCGAAACACCTTAACC ] [+] EMBL BX622551 [ AGTGCGTAATGCTTCNGAANACAGAGGAAAGTCCTCTAGGAGCTACATCNACCAGCGCATTGGAACTGCTAAAACNACCTGCTGTCGGTATGGATCGNANGACTATGAGAAAGCCCTCTTGGAGCATCATTATCCAGCGCGCAGGAATCGATTATTACGCCCGCNGTCGTAA ] [-] EMBL BX466683 [ CGAGTCCTCTTGAAGCATCAACCAGCACNCAGGAATCGATTACTCAGTCCGCAGTCGAAATGCATCCGAAGATGAAGGAATGTCTTCTTGGAGCATCACTACCCAGCGCACAGGAATCGATTAATCAGCCCGCAGTCGTAATGCTTCCGAAGAAGAAGGCAAGTCCTCTGGGAGCTACATCGTCCAGTGCCCCGGAACCGCTTAAACAATCTGCCGTCGGTATGAATCCCAAGACGAAGGAAATTCTTCCAGGAGGAGCTGCTGTAACCAGCGCACCGAAACACCTTAAACCATTCGCTGTCGGTATGAATCCCAAGACGAAAGAAATTCTTCCTGGAGGTGCTACATTAACCAGCGTTACGGGACTGCTTATGCAATCCGCTGTCTATATGAATCCCAAGACAAAGGAAATTCTCCCTGGAGGTGCTACATTAACCAGCGCAACGGGATCGCTTATACAGCCCACTATCGCTATGAATCCGAAAACGAAGGAAAGTCTTCTTGCAACGACATCCACCACCAGCAGCCCGCGTGAATCGTTAAACCAACCCAACGCCATTGTTATAGAAACCGAAAAAAAAAATTACAACAAAAGGCAGCATGTGC] consensusID : consensus_5147#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 793 fasta sequence [GCAGAATCCCCCCGAGGTTTAAAGTCCTCTANGAGCTACATCAACCAGCGCATTGGTACTGCTAAAACAACCTGCTGTCGGTATGGATCGAAAGACTAAAGAAAGCCCTCTTGGAGCATCATTATACCAGCGCGCAGGAATCGATTATTAAGCCCGCAGTCGTAATGCATACCGAAGATGAAGGAAAGTCTTCTTGGAGCATCACTACCCAGCACACAGGAATCGATTAATCAGCCCGCCAGTCGTAATGCTTCCGAAGACAAAGGAAAGTCCTCTAGGAGCTACATCAATCAGCGCATTGGAACTGCTAAAACAACCTGCAGTCGGTATGGATCGGAAGACCAAAACGAAAGTCCTACTTGGAGCATCATTATCCAGCGCACTNGGAATCGATTGCTCAGCCCGCAGTCGTCAATGCATCCCGAAGACGAGGGCGAGGTCCTCTTGAAAGCATCAACCAGCACGCAGGAATCGATTACTCAGTCCGCAGTCGAAATGCATCCGAAGATTGACGGANTGTCTTCTTGGAGCATCACTACCCAGGCACAGGAATCGATTAATCAGCCGCAGTCGTAATGCTTCCGAGGAAGAAGGCAAGTACTCTGGGAGCTACATCGTCCAGTGCCCGGAACCAGCTTAAACAAATCTGCCGTCGGGTATGAATCCCAAGAGAAGGAAACTTCTTCCAGGAGGCAGCTGCTTTAACCAGCGCACGAAACACTTAAACCATCGGCTGTCGGGTATGACTCCANGACGAAGGAAATCTCCTGGAGGTGTACATACCAGGCACGGA] [+] EMBL AL694171 [GCAGAATCCCCCCGAGGTTTAAAGTCCTCTANGAGCTACATCAACCAGCGCATTGGTACTGCTAAAACAACCTGCTGTCGGTATGGATCGAAAGACTAAAGAAAGCCCTCTTGGAGCATCATTATACCAGCGCGCAGGAATCGATTATTAAGCCCGCAGTCGTAATGCATACCGAAGATGAAGGAAAGTCTTCTTGGAGCATCACTACCCAGCACACAGGAATCGATTAATCAGCCCGCCAGTCGTAATGCTTCCGAAGACAAAGGAAAGTCCTCTAGGAGCTACATCAATCAGCGCATTGGAACTGCTAAAACAACCTGCAGTCGGTATGGATCGGAAGACCAAAACGAAAGTCCTACTTGGAGCATCATTATCCAGCGCACTNGGAATCGATTGCTCAGCCCGCAGTCGTCAATGCATCCCGAAGACGAGGGCGAGGTCCTCTTGAAAGCATCAACCAGCACGCAGGAATCGATTACTCAGTCCGCAGTCGAAATGCATCCGAAGATTGACGGANTGTCTTCTTGGAGCATCACTACCCAGGCACAGGAATCGATTAATCAGCCGCAGTCGTAATGCTTCCGAGGAAGAAGGCAAGTACTCTGGGAGCTACATCGTCCAGTGCCCGGAACCAGCTTAAACAAATCTGCCGTCGGGTATGAATCCCAAGAGAAGGAAACTTCTTCCAGGAGGCAGCTGCTTTAACCAGCGCACGAAACACTTAAACCATCGGCTGTCGGGTATGACTCCANGACGAAGGAAATCTCCTGGAGGTGTACATACCAGGCACGGA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_5147#0 TGGAGCATCACTACCCAGCACACAGGAATCGATTAATCAGCCCGCAGTCGTAATGCTTCC 60 consensus_5147#1 -----------------------------------------------GCAGAATCCCCCC 13 * *** * ** consensus_5147#0 GAAGACAAAGGAAAGTCCTCTAGGAGCTACATCAACCAGCGCATTGGAACTGCTAAAACA 120 consensus_5147#1 GAGGTTT----AAAGTCCTCTANGAGCTACATCAACCAGCGCATTGGTACTGCTAAAACA 69 ** * *********** ************************ ************ consensus_5147#0 ACCTGCTGTCGGTATGGATCGAAAGACTAAAGAAAGCCCTCTTGGAGCATCATTAT-CCA 179 consensus_5147#1 ACCTGCTGTCGGTATGGATCGAAAGACTAAAGAAAGCCCTCTTGGAGCATCATTATACCA 129 ******************************************************** *** consensus_5147#0 GCGCGCAGGAATCGATTATTAAGCCCGCAGTCGTAATGCAT-CCGAAGATGAAGGAAAGT 238 consensus_5147#1 GCGCGCAGGAATCGATTATTAAGCCCGCAGTCGTAATGCATACCGAAGATGAAGGAAAGT 189 ***************************************** ****************** consensus_5147#0 CTTCTTGGAGCATCACTACCCAGCACACAGGAATCGATTAATCAGCCCGC-AGTCGTAAT 297 consensus_5147#1 CTTCTTGGAGCATCACTACCCAGCACACAGGAATCGATTAATCAGCCCGCCAGTCGTAAT 249 ************************************************** ********* consensus_5147#0 GCTTCCGAAGACAAAGGAAAGTCCTCTAGGAGCTACATCAATCAGCGCATTGGAACTGCT 357 consensus_5147#1 GCTTCCGAAGACAAAGGAAAGTCCTCTAGGAGCTACATCAATCAGCGCATTGGAACTGCT 309 ************************************************************ consensus_5147#0 AAAACAACCTGCAGTCGGTATGGATCGGAAGACAAAA--GAAAGTCCT-CTTGGAGCATC 414 consensus_5147#1 AAAACAACCTGCAGTCGGTATGGATCGGAAGACCAAAACGAAAGTCCTACTTGGAGCATC 369 ********************************* *** ********* *********** consensus_5147#0 ATTATCCAGCGCACTGG-AATCGATTGCTCAGCCCGCAGTCGT-AATGCATCC-GAAGAC 471 consensus_5147#1 ATTATCCAGCGCACTNGGAATCGATTGCTCAGCCCGCAGTCGTCAATGCATCCCGAAGAC 429 *************** * ************************* ********* ****** consensus_5147#0 GAGGGCGAG-TCCTCTTGAA-GCATCAACCAGCACGCAGGAATCGATTACTCAGTCCGCA 529 consensus_5147#1 GAGGGCGAGGTCCTCTTGAAAGCATCAACCAGCACGCAGGAATCGATTACTCAGTCCGCA 489 ********* ********** *************************************** consensus_5147#0 GTCGAAATGCATCCGAAGAT-GAAGGAATGTCTTCTTGGAGCATCACTACCCAGCGCACA 588 consensus_5147#1 GTCGAAATGCATCCGAAGATTGACGGANTGTCTTCTTGGAGCATCACTACCCAG-GCACA 548 ******************** ** *** ************************** ***** consensus_5147#0 GGAANCGATTAATCAGCCCGCAGTCGTAATGCTTCCGAAGAAGAANGCAAGTCCTCTGGG 648 consensus_5147#1 GGAATCGATTAATCAGCC-GCAGTCGTAATGCTTCCGAGGAAGAAGGCAAGTACTCTGGG 607 **** ************* ******************* ****** ****** ******* consensus_5147#0 AGCTACATCGTCCAGTGNCCCGGAACCGCTTAAACNA-TCTGCCGTCGG-TATGAATNCC 706 consensus_5147#1 AGCTACATCGTCCAGTGCCCGGAACCAGCTTAAACAAATCTGCCGTCGGGTATGAATCCC 667 ***************** ** * * * ******** * *********** ******* ** consensus_5147#0 AAGACGAANGAAATTCTTCCAGGANG-AGCTGCTTTAACCAGCGCACCGAAACACCTTAA 765 consensus_5147#1 AAGAGAAGGAAACTTCTTCCAGGAGGCAGCTGCTTTAACCAGCGCAC-GAAACAC-TTAA 725 **** * ** *********** * ******************** ******* **** consensus_5147#0 CCCATTCGCTGTCGGTATGAATCCCAAGACGAAAGAAATTCTTCCTGGAGGTGCTACATT 825 consensus_5147#1 ACCATCGGCTGTCGGGTATGACTCCANGACGAAGGAAAT--CTCCTGGAGGTG-TACAT- 781 **** ******** * *** ****** ***** *********** ***** consensus_5147#0 AACCAGCGTTACGGGACTGCTTATGCAATCCGCTGTCTATATGAATCCCAAGACAAAGGA 885 consensus_5147#1 -ACCAG--GCACGGA--------------------------------------------- 793 ***** **** consensus_5147#0 AATTCTCCCTGGAGGTGCTACATTAACCAGCGCAACGGGATCGCTTATACAGCCCACTAT 945 consensus_5147#1 ------------------------------------------------------------ consensus_5147#0 CGCTATGAATCCGAAAACGAAGGAAAGTCTTCTTGCAACGACATCCACCACCAGCAGCCC 1005 consensus_5147#1 ------------------------------------------------------------ consensus_5147#0 GCGTGAATCGTTAAACCAACCCAACGCCATTGTTATAGAAACCGAAAAAAAAAATTACAA 1065 consensus_5147#1 ------------------------------------------------------------ consensus_5147#0 CAAAAGGCAGCATGTGC 1082 consensus_5147#1 ----------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||