cluster # 5148

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Anopheles gambiae
cluster # 5148 cluster # 5148 Sequences # 4 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_5148#0 length = 830 sequences # 3

consensus_5148#1 length = 556 sequences # 1

consensusID : consensus_5148#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 830
fasta sequence

                              [AGAATCGCCCGAGGT-T--ATTCGTTAGTATCGTGGGAACGTGAGCGTCCGCAAAATGTAT-CGCAAAGCAGCTGTTGCGCTAATCGTCTGCTTCCTGGCAGTGGCCGTCAGTGGTGAGTCGGCGACTTCGGATCCGCTCTACCAGCAGTGGAAGGGTCGGATCGT-CGGTGGCACTTACGCACGTGATGGAGACTTCCCGTATCAGGCCTCGTTCCGCACGCTGGACGGTATGCATATCTGTGGTGGTGCCGTGCTGAACCAGCAGTGGGTCATTACG-GCCGCTTCGTGCCTG-TTTGGCCGTTCGACTGCGGACAC-GCGCGTCGTGGTGGGAGCCTACCGGCTGAGCCA-GGG-TGGCTTCAATCTCGGCCTGCGACGCATCGTCATCCATCCCAACT-TTGCATCGGCCACGCTGGCCAA-GACGTTGCGGTGGCTCGTGTGG-ACAG-AGATGGTGCTGANTGATGCCGTGCAGGGTGTGCAAGCTTGGCTCGTACAACATTAACGTGG-CTACAGGAGCCCTTGTGTCCGGTATGGGGTCGTACCGAGTTCTCCAACCCCCAGTTCCCGGACAACTTGCAGTACATTGCGGTAAACGTGATCTCGCAGCTGGAATGCCGCGCACGGTTCGCTGCACCGTACGATGCACGGATCTACGATTCGACCATGTGCAGCAGCAGCCCGGTCGGCCAGGGCACGTGCCTCGGAGATGCGGGCAGTCCATTGATCCACGGTGCCGAACTGCACGGCATCGTTTCGTGGGGCATTCCGTGCGGTGANGGCTATCCGGACGTTTACGCACGCATCTCGTCCCACCGTGGCTGGATCCTTGCGCACAC]

[+] EMBL AL934584             [AGAATCGCCCGAGGT T  ATTCGTTAGTATCGTGGGAACGTGAGCGTCCGCAAAATGTAT CGCAAAGCAGCTGTTGCGCTAATCGTCTGCTTCCTGGCAGTGGCCGTCAGTGGTGAGTCGGCGACTTCGGATCCGCTCTACCAGCAGTGGAAGGGTCGGATCGTACGGTGGCACTTACGCACGTGATGGAGACTTCCCGTATCAGGCCTCGTTCCGCACGCTGGACGGTATGCATATCTGTGGTGGTGCCGTGCTGAACCAGCAGTGGGTCATTACG GCCGCTTCGTGCCTG TTTGGCCGTTCGACTGCGGACAC GCGCGTCGTGGTGGGAGCCTACCGGCTGAGCCA GGGTTGGCTTCAATCTCGGCCTGCGACGCATCGTCATCCATCCCAACTNTTGCATCGGCCACGCTGGCCAA                                                                                                                                                                                                                                                                                                                                                                                                                                    ]
[+] EMBL AL930099             [ GAATTGCCCGAGGTNTCGGTTCGTTAGTATNGTGGGAACGTGAGCGTCCGCAAAATGTATNTGCAAAGCAGCTGTTGCGCTAATCGTCTGCTTCCTGGCAGTGGCCGTCAGTGGTGAGTCGGCGACTTCGGATCCGGTCTAACAGCAGTGGAAGGGTCGGATCGT CGGTGGCACTTACGCACGTNATGGAGACTTCCCGTATCAGGCCTCGTTCCGCACGCTGGACGGTATGCATATCTGTGGTGGTGCCGTGCTGAACCAGCAGTGGGTCATTACGTGGCGCTTCGTGCCTGTTTTGGGCGTTCGACTGCGGACACTGCGCGTCGTGGTGGGAGCCTACCGGCTGAGCCACGGG TGGCTTCAATCTCGG CTGCGACGCATCGTCATCCATCCCAACT TTGCATCGG CACGCTGG CAA GACGTTGCGGTGGCTCGTGTGG ACAG AGATGGTGCTGANTGATGCCGTGCAGGGTGTGCAAGCTTGGCTCGTACAACATTAACGTGG CTACAGGAGCCCTTGTGTCCGGTATGG                                                                                                                                                                                                                                                                                                              ]
[+] EMBL BX627763             [                              TCGTGGGAACGTGAGCGTCCGCAAAATGTAT CGCAAAGCAGCTGTTGCGCTAATCGTCTGCTTCCTGGCAGTGGCCGTCAGTGGTGAGTCGGCGACTTCGGATCCGCTCTACCAGCAGTGGAAGGGTCGGATCGT CGGTGGCACTTACGCACGTGATGGAGACTTCCCGTATCAGGCCTCGTTCCGCACGCTGGACGGTATGCATATCTGTGGTGGTGCCGTGCTGAACCAGCAGTGGGTCATTACG GCCGCTTCGTGCCTG TTTGGCCGTTCGACTGCGGACAC GCGCGTCGTGGTGGGAGCCTACCGGCTGAGCCA GGG TGGCTTCAATCTCGGCCTGCGACGCATCGTCATCCATCCCAACT TTGCATCGGCCACGCTGGCCAACGACGTTGCGGTGGCTCGTGTGGCACAGCAGATGGTGCTGAGTGATGCCGTGCAGGGTGTGC AGCTTGGCTCGTACAACATTAACGTGGCCTAC GGAGCCCTTGTGTCCGGT TGGGGTCGTACCGAGTTCTCCAACCCCCAGTTCCCGGACAACTTGCAGTACATTGCGGTAAACGTGATCTCGCAGCTGGAATGCCGCGCACGGTTCGCTGCACCGTACGATGCACGGATCTACGATTCGACCATGTGCAGCAGCAGCCCGGTCGGCCAGGGCACGTGCCTCGGAGATGCGGGCAGTCCATTGATCCACGGTGCCGAACTGCACGGCATCGTTTCGTGGGGCATTCCGTGCGGTGANGGCTATCCGGACGTTTACGCACGCATCTCGTCCCACCGTGGCTGGATCCTTGCGCACAC]




>consensus_5148#0
AGAATCGCCCGAGGTTATTCGTTAGTATCGTGGGAACGTGAGCGTCCGCAAAATGTATCG
CAAAGCAGCTGTTGCGCTAATCGTCTGCTTCCTGGCAGTGGCCGTCAGTGGTGAGTCGGC
GACTTCGGATCCGCTCTACCAGCAGTGGAAGGGTCGGATCGTCGGTGGCACTTACGCACG
TGATGGAGACTTCCCGTATCAGGCCTCGTTCCGCACGCTGGACGGTATGCATATCTGTGG
TGGTGCCGTGCTGAACCAGCAGTGGGTCATTACGGCCGCTTCGTGCCTGTTTGGCCGTTC
GACTGCGGACACGCGCGTCGTGGTGGGAGCCTACCGGCTGAGCCAGGGTGGCTTCAATCT
CGGCCTGCGACGCATCGTCATCCATCCCAACTTTGCATCGGCCACGCTGGCCAAGACGTT
GCGGTGGCTCGTGTGGACAGAGATGGTGCTGANTGATGCCGTGCAGGGTGTGCAAGCTTG
GCTCGTACAACATTAACGTGGCTACAGGAGCCCTTGTGTCCGGTATGGGGTCGTACCGAG
TTCTCCAACCCCCAGTTCCCGGACAACTTGCAGTACATTGCGGTAAACGTGATCTCGCAG
CTGGAATGCCGCGCACGGTTCGCTGCACCGTACGATGCACGGATCTACGATTCGACCATG
TGCAGCAGCAGCCCGGTCGGCCAGGGCACGTGCCTCGGAGATGCGGGCAGTCCATTGATC
CACGGTGCCGAACTGCACGGCATCGTTTCGTGGGGCATTCCGTGCGGTGANGGCTATCCG
GACGTTTACGCACGCATCTCGTCCCACCGTGGCTGGATCCTTGCGCACAC

consensusID : consensus_5148#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 556
fasta sequence

                              [AGGTTTTAGGTTCGTTAGTATCGTGGGAACGTGAGCGTCGCTNAAATGTATCGCAAAGCAGCTGTTGCGCTAATCGTCTGCTTCCTGGCAGTGGCCGTCAGTGGTGAGTCGGCGACTTCGGATCCGCTCTACCAGCAGTGGAAGGGTCGGATCGTCGGTGGCACTTACGCACGTGATGGAGACTTCCCGTATCAGGCCTCGTTCCGCACGCTGGACGGTATGCATATCTGTGGTGGTGCCGTGCTGAACCAGCAGTGGGTCATTACGGCCGCTTCGTGCCTGTTTGGCCGTTCGACTGCGGACACGCGCGTCGTGGTGGGAGCCTACCGGCTGATCCAGGGTGGCTTCAATCTCGGCCTGCGACGCATCGTCATCCATCCCAACTTTGCATCGGCCACGCTGGCCAACGACGTTGCGGTGGCTCGTGTGGCACAGCAGATGGTGCTGAGTGATGCCGTGCAGGGTGTGCAGCTTGGCTCGTACAACATTAACGTGGCCTACGGAGCCCTTGTGTCCGGTTGGGGTCGTACCGAGTTCTCCAACCCCAGTTCCCGGA]

[+] EMBL AL694188             [AGGTTTTAGGTTCGTTAGTATCGTGGGAACGTGAGCGTCGCTNAAATGTATCGCAAAGCAGCTGTTGCGCTAATCGTCTGCTTCCTGGCAGTGGCCGTCAGTGGTGAGTCGGCGACTTCGGATCCGCTCTACCAGCAGTGGAAGGGTCGGATCGTCGGTGGCACTTACGCACGTGATGGAGACTTCCCGTATCAGGCCTCGTTCCGCACGCTGGACGGTATGCATATCTGTGGTGGTGCCGTGCTGAACCAGCAGTGGGTCATTACGGCCGCTTCGTGCCTGTTTGGCCGTTCGACTGCGGACACGCGCGTCGTGGTGGGAGCCTACCGGCTGATCCAGGGTGGCTTCAATCTCGGCCTGCGACGCATCGTCATCCATCCCAACTTTGCATCGGCCACGCTGGCCAACGACGTTGCGGTGGCTCGTGTGGCACAGCAGATGGTGCTGAGTGATGCCGTGCAGGGTGTGCAGCTTGGCTCGTACAACATTAACGTGGCCTACGGAGCCCTTGTGTCCGGTTGGGGTCGTACCGAGTTCTCCAACCCCAGTTCCCGGA]




>consensus_5148#1
AGGTTTTAGGTTCGTTAGTATCGTGGGAACGTGAGCGTCGCTNAAATGTATCGCAAAGCA
GCTGTTGCGCTAATCGTCTGCTTCCTGGCAGTGGCCGTCAGTGGTGAGTCGGCGACTTCG
GATCCGCTCTACCAGCAGTGGAAGGGTCGGATCGTCGGTGGCACTTACGCACGTGATGGA
GACTTCCCGTATCAGGCCTCGTTCCGCACGCTGGACGGTATGCATATCTGTGGTGGTGCC
GTGCTGAACCAGCAGTGGGTCATTACGGCCGCTTCGTGCCTGTTTGGCCGTTCGACTGCG
GACACGCGCGTCGTGGTGGGAGCCTACCGGCTGATCCAGGGTGGCTTCAATCTCGGCCTG
CGACGCATCGTCATCCATCCCAACTTTGCATCGGCCACGCTGGCCAACGACGTTGCGGTG
GCTCGTGTGGCACAGCAGATGGTGCTGAGTGATGCCGTGCAGGGTGTGCAGCTTGGCTCG
TACAACATTAACGTGGCCTACGGAGCCCTTGTGTCCGGTTGGGGTCGTACCGAGTTCTCC
AACCCCAGTTCCCGGA

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_5148#0      AGAATCGCCCGAGGTTATTCGTTAGTATCGTGGGAACGTGAGCGTCCGCAAAATGTATCG 60
consensus_5148#1      ----AGGTTTTAGGT---TCGTTAGTATCGTGGGAACGTGAGCGTCGCTNAAATGTATCG 53
                            *    ****   ****************************    **********

consensus_5148#0      CAAAGCAGCTGTTGCGCTAATCGTCTGCTTCCTGGCAGTGGCCGTCAGTGGTGAGTCGGC 120
consensus_5148#1      CAAAGCAGCTGTTGCGCTAATCGTCTGCTTCCTGGCAGTGGCCGTCAGTGGTGAGTCGGC 113
                      ************************************************************

consensus_5148#0      GACTTCGGATCCGCTCTACCAGCAGTGGAAGGGTCGGATCGTCGGTGGCACTTACGCACG 180
consensus_5148#1      GACTTCGGATCCGCTCTACCAGCAGTGGAAGGGTCGGATCGTCGGTGGCACTTACGCACG 173
                      ************************************************************

consensus_5148#0      TGATGGAGACTTCCCGTATCAGGCCTCGTTCCGCACGCTGGACGGTATGCATATCTGTGG 240
consensus_5148#1      TGATGGAGACTTCCCGTATCAGGCCTCGTTCCGCACGCTGGACGGTATGCATATCTGTGG 233
                      ************************************************************

consensus_5148#0      TGGTGCCGTGCTGAACCAGCAGTGGGTCATTACGGCCGCTTCGTGCCTGTTTGGCCGTTC 300
consensus_5148#1      TGGTGCCGTGCTGAACCAGCAGTGGGTCATTACGGCCGCTTCGTGCCTGTTTGGCCGTTC 293
                      ************************************************************

consensus_5148#0      GACTGCGGACACGCGCGTCGTGGTGGGAGCCTACCGGCTGAGCCAGGGTGGCTTCAATCT 360
consensus_5148#1      GACTGCGGACACGCGCGTCGTGGTGGGAGCCTACCGGCTGATCCAGGGTGGCTTCAATCT 353
                      ***************************************** ******************

consensus_5148#0      CGGCCTGCGACGCATCGTCATCCATCCCAACTTTGCATCGGCCACGCTGGCCAA-GACGT 419
consensus_5148#1      CGGCCTGCGACGCATCGTCATCCATCCCAACTTTGCATCGGCCACGCTGGCCAACGACGT 413
                      ****************************************************** *****

consensus_5148#0      TGCGGTGGCTCGTGTGG-ACAG-AGATGGTGCTGANTGATGCCGTGCAGGGTGTGCAAGC 477
consensus_5148#1      TGCGGTGGCTCGTGTGGCACAGCAGATGGTGCTGAGTGATGCCGTGCAGGGTGTGCA-GC 472
                      ***************** **** ************ ********************* **

consensus_5148#0      TTGGCTCGTACAACATTAACGTGGCTACAGGAGCCCTTGTGTCCGGTATGGGGTCGTACC 537
consensus_5148#1      TTGGCTCGTACAACATTAACGTGGCCTACGGAGCCCTTGTGTCCGGT-TGGGGTCGTACC 531
                      *************************    ****************** ************

consensus_5148#0      GAGTTCTCCAACCCCCAGTTCCCGGACAACTTGCAGTACATTGCGGTAAACGTGATCTCG 597
consensus_5148#1      GAGTTCTCCAACCCC-AGTTCCCGGA---------------------------------- 556
                      *************** **********                                  

consensus_5148#0      CAGCTGGAATGCCGCGCACGGTTCGCTGCACCGTACGATGCACGGATCTACGATTCGACC 657
consensus_5148#1      ------------------------------------------------------------
                                                                                  

consensus_5148#0      ATGTGCAGCAGCAGCCCGGTCGGCCAGGGCACGTGCCTCGGAGATGCGGGCAGTCCATTG 717
consensus_5148#1      ------------------------------------------------------------
                                                                                  

consensus_5148#0      ATCCACGGTGCCGAACTGCACGGCATCGTTTCGTGGGGCATTCCGTGCGGTGANGGCTAT 777
consensus_5148#1      ------------------------------------------------------------
                                                                                  

consensus_5148#0      CCGGACGTTTACGCACGCATCTCGTCCCACCGTGGCTGGATCCTTGCGCACAC 830
consensus_5148#1      -----------------------------------------------------