These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5149#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1004 fasta sequence [CCGCAACGCTGGGATTAGATCCACGTTTTCCGGTGCCACCGGGTGATATGGGAGTTTCGGTGGAGATCGACACTAACGACACCGACGTGACAGATCTGGTGAATCAAGGAATGATACATCAAGGGCTGAATCAGTTCTCTTCCGATCTGATGTCCGTACGGAGACGACTGCCGGAAATTCGAGACCCCTGGTGCCGCGAACCGGGTCGCTATCGTGCCGATCTACCCCCCACCTCGATTGTGATCGTGTTCTACAATGAAGCGTGGTCAGTGTTGGTACGCACGGTGCACTCCATTCTCGACCGATCGCCTCCGAATCTAGTGAGCGAAATAGTGCTCGTGGATGATTTCAGCTTTATGCCTCATTTGAAAGCCCAACTAGAGGAATACTTTGCCACCAACCCGAAAGTCCGAATCGTACGTGCTCCAAAAGCGACTTGGATTAATCAGAGCCCGCATGCTTGGTGGAAAGAGTACAAAAACCGATTTGATTACGTTCCTGGACGCGCACGTTGAAGTGACTGTGGGATGGCTGGAGGCACTGATACAGCCCGTTGTAGAGAGCTGGACCACGATCGCGATCCCAACGATCGATTGGATCGATGAGAACAACATGAAGTATCGCGATGACAAGGCTCCCACCTTTGTCGGTGCATACGATTGGGACCTCAACTTTGGCTGGTGGGGTCGATGGTCTCAAAAAAAGCAGAACGAGAACAAGATGGAACCGTTCGATACGCCTGCCATGGCTGGAGGATTGTTCGCAATCAATAGGACGTTCTTCGAGCGCATTGGATGGTACGATGATGGGTTCGATATCTATGGTATCGAGAACATTGAACTTTCCGTTAAGAGTTGGATGTGTGGAGGGAAGATGGTCACAGTACCTTGTTCTCGAGTAGGGCACATCCAGAAGACGGGCCACCCGTATCTTTACAAACAACCGAAAGACGTTGTGCGTGCGAACTCGATCCGGCTGGCCGAGGTGTGGATGGACGAGTACAA] [+] EMBL BM631737 [CCGCAACGCTGGGATTAGATCCACGTTTTCCGGTGCCACCGGGTGATATGGGAGTTTCGGTGGAGATCGACACTAACGACACCGACGTGACAGATCTGGTGAATCAAGGAATGATACATCAAGGGCTGAATCAGTTCTCTTCCGATCTGATGTCCGTACGGAGACGACTGCCGGAAATTCGAGACCCCTGGTGCCGCGAACCGGGTCGCTATCGTGCCGATCTACCCCCCACCTCGATTGTGATCGTGTTCTACAATGAAGCGTGGTCAGTGTTGGTACGCACGGTGCACTCCATTCTCGACCGATCGCCTCCGAATCTAGTGAGCGAAATAGTGCTCGTGGATGATTTCAGCTTTATGCCTCATTTGAAAGCCCAACTAGAGGAATACTTTGCCACCAACCCGAAAGTCCGAATCGTACGTGCTCCAAAAGCGACTTGGATTAATCAGAGCCCGCATGCTTGGTGGAAAGAGTACAAAAACCGATTTGATTACGT ] [+] EMBL BM596309 [ ccggTTGATAGCTCATTTGAAAGCCCAACTAGAGGAGTACTTTGCCACCAACCCGAAAGTCCGAATCGTACGTGCTCC AAAGCGACTTGGATTAATCAGAGCCCGCATGCTTGGTGGAAAGAGTACAAAGACCGATTTGATTACGTTCCTGGACGCGCACGTTGAAGTGACTGTGGGATGGCTGGAGGCACTGATACAGCCCGTTGTAGAGAGCTGGACCACGATCGCGATCCCAACGATCGATTGGATCGATGAGAACAACATGAAGTATCGCGATGACAAGGCTCCCACCTTTGTCGGTGCATACGATTGGGACCTCAACTTTGGCTGGTGGGGTCGATGGTCTCAAAAAAAGCAGAACGAGAACAAGATGGAACCGTTCGATACGCCTGCCATGGCTGGAGGATTGTTCGCAATCAATAGGACGTTCTTCGAGCGCATTGGATGGTACGATGATGGGTTCGATATCTATGGTATCGAGAACATTGAACTTTCCGTTAAGAGTTGGATGTGTGGAGGGAAGATGGTCACAGTACCTTGTTCTCGAGTAGGGCACATCCAGAAGACGGGCCACCCGTATCTTTACAAACAACCGAAAGACGTTGTGCGTGCGAACTCGATCCGGCTGGCCGAGGTGTGGATGGACGAGTACAA] consensusID : consensus_5149#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 683 fasta sequence [CCGCTGGGGTGGTACGACGATGGGTTCGACATCTATGGTATCGAGAACATTGAGCTGTCGATGAAGAGTTGGATGTGTGGAGGGAAGATGGTGACGGTTCCCTGCTCGCGGGTAGGCCACATCCAGAAGGTTGGACATCCGTATCTTCACAACGAAAAGAAGGACGTTGTGCGTGCGAACTCGATCCGGCTGGCCGAGGTGTGGATGGATGAGTATAAGGCAGTCATTTTCGACATCTACGGTATTCCTCATTACCTGGAGGAGGAGTTCGGTTCAGTGGCATCACGCAAAGCCATCCGGGAGAGTGCAAATTGTAAGCCATTCCGCTACTACCTGGAGAATGCATTCCCCGAGATGCACAATCCGCTCATATCGGGAGCTTTCCGTGGGGAGGTAAAGAGCGTCCTGCTAGGCAACGACACCTGCCTCGAATATAGTTCCGAGTTTCTCGGCATGGCACGGTGTAACGGTGAGCAGACAACACAGTACTGGGCCCACAACTACTACCAGGAGATCAACAGCTACAAGCACTGTTTGGACTACACCGGCGCCAGTCTCGGAGTGTTTGGCTGTCATCGCTCACGTGGCAACCAGGCGTGGCGTGTACTGACCGATACGGGACAACTCCAAAGCATCAAGCACGACCAATGTCTTGCGGTCAATACGTCTACAAACATTACGCT] [+] EMBL BM602203 [CCGCTGGGGTGGTACGACGATGGGTTCGACATCTATGGTATCGAGAACATTGAGCTGTCGATGAAGAGTTGGATGTGTGGAGGGAAGATGGTGACGGTTCCCTGCTCGCGGGTAGGCCACATCCAGAAGGTTGGACATCCGTATCTTCACAACGAAAAGAAGGACGTTGTGCGTGCGAACTCGATCCGGCTGGCCGAGGTGTGGATGGATGAGTATAAGGCAGTCATTTTCGACATCTACGGTATTCCTCATTACCTGGAGGAGGAGTTCGGTTCAGTGGCATCACGCAAAGCCATCCGGGAGAGTGCAAATTGTAAGCCATTCCGCTACTACCTGGAGAATGCATTCCCCGAGATGCACAATCCGCTCATATCGGGAGCTTTCCGTGGGGAGGTAAAGAGCGTCCTGCTAGGCAACGACACCTGCCTCGAATATAGTTCCGAGTTTCTCGGCATGGCACGGTGTAACGGTGAGCAGACAACACAGTACTGGGCCCACAACTACTACCAGGAGATCAACAGCTACAAGCACTGTTTGGACTACACCGGCGCCAGTCTCGGAGTGTTTGGCTGTCATCGCTCACGTGGCAACCAGGCGTGGCGTGTACTGACCGATACGGGACAACTCCAAAGCATCAAGCACGACCAATGTCTTGCGGTCAATACGTCTACAAACATTACGCT] consensusID : consensus_5149#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 492 fasta sequence [CGCCCACGTTTATGTTCGCAAGGGATGGCTGGANGCACTGCTAATGTTGTGGCACGTAACTCCACCACGATCGCGATCCCATCGATCGATTGGATCGATGAAAAAGTATGGCGCTTATAGCGAACAAGTCGCTCTCCTACATCGGTGCGTACGATTGGGATCTCAACTTTGGCTGGTGGTATCGCTCGTCTATGAAGAAGAAGTATGCAAACCTTCTCGAACCGTTTGATACGCCTGCATGGCTGGAGGATTGTTCGCGATCAATAGGACGTTTTTTGAGCGACTGGGGTGGTACGACCGATGGGGTTCGACCATCTATGGTATCCGAGAACATTGAGCTGTCGATGAAGAGTTGGATGTGTGGAGGGAAGATGGTGACGGTTCCCCTGGCCTCCGCGGGGTAGGCCACATCCANAAGGTTGGGACAATCCGGTATCTTCCACAACCGAAAAGAANGGGACGTTGTGGCGTTGCGAACCTCGATCCCGGCTG] [+] EMBL AL694242 [CGCCCACGTTTATGTTCGCAAGGGATGGCTGGANGCACTGCTAATGTTGTGGCACGTAACTCCACCACGATCGCGATCCCATCGATCGATTGGATCGATGAAAAAGTATGGCGCTTATAGCGAACAAGTCGCTCTCCTACATCGGTGCGTACGATTGGGATCTCAACTTTGGCTGGTGGTATCGCTCGTCTATGAAGAAGAAGTATGCAAACCTTCTCGAACCGTTTGATACGCCTGCATGGCTGGAGGATTGTTCGCGATCAATAGGACGTTTTTTGAGCGACTGGGGTGGTACGACCGATGGGGTTCGACCATCTATGGTATCCGAGAACATTGAGCTGTCGATGAAGAGTTGGATGTGTGGAGGGAAGATGGTGACGGTTCCCCTGGCCTCCGCGGGGTAGGCCACATCCANAAGGTTGGGACAATCCGGTATCTTCCACAACCGAAAAGAANGGGACGTTGTGGCGTTGCGAACCTCGATCCCGGCTG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_5149#0 CCGCAACGCTGGGATTAGATCCACGTTTTCCGGTGCCACCGGGTGATATGGGAGTTTCGG 60 consensus_5149#2 ------------------------------------------------------------ consensus_5149#1 ------------------------------------------------------------ consensus_5149#0 TGGAGATCGACACTAACGACACCGACGTGACAGATCTGGTGAATCAAGGAATGATACATC 120 consensus_5149#2 ------------------------------------------------------------ consensus_5149#1 ------------------------------------------------------------ consensus_5149#0 AAGGGCTGAATCAGTTCTCTTCCGATCTGATGTCCGTACGGAGACGACTGCCGGAAATTC 180 consensus_5149#2 ------------------------------------------------------------ consensus_5149#1 ------------------------------------------------------------ consensus_5149#0 GAGACCCCTGGTGCCGCGAACCGGGTCGCTATCGTGCCGATCTACCCCCCACCTCGATTG 240 consensus_5149#2 ------------------------------------------------------------ consensus_5149#1 ------------------------------------------------------------ consensus_5149#0 TGATCGTGTTCTACAATGAAGCGTGGTCAGTGTTGGTACGCACGGTGCACTCCATTCTCG 300 consensus_5149#2 ------------------------------------------------------------ consensus_5149#1 ------------------------------------------------------------ consensus_5149#0 ACCGATCGCCTCCGAATCTAGTGAGCGAAATAGTGCTCGTGGATGATTTCAGCTTTATGC 360 consensus_5149#2 ------------------------------------------------------------ consensus_5149#1 ---------------------CCGCTGGGGTGGTAC--GACGATGGGTTCGACATCTATG 37 consensus_5149#0 CTCATTTGAAAGCCCAACTA--GAGGAATACTTTGCCACCAACCCGAAAGTCCG-AATCG 417 consensus_5149#2 ------------------------------------------------------------ consensus_5149#1 GTATCGAGAACATTGAGCTGTCGATGAAGAGTTGGATGTGTGGAGGGAAGATGGTGACGG 97 consensus_5149#0 TACGTGCTCCAAAAGCGACTTGGATTAATCAGAGCCCGCATGCTTGG--TGGAAAGAGTA 475 consensus_5149#2 ------------------------------------------------------------ consensus_5149#1 TTCCCTGCTCGCGGGTAGGCCACATCCAGAAGGTTGGACATCCGTATCTTCACAACGAAA 157 consensus_5149#0 CAAAAACCGATTTGATTACGTTCCTGGACGCGCACGTTGAAGTGACTGTGGGATGGCTGG 535 consensus_5149#2 ----------------------------CGCCCACGTTTATGTTCGCAAGGGATGGCTGG 32 consensus_5149#1 AGAAGGACGTTGTGCGTGCGAACTCGATCCGGCTGGCCGAGGTGTGGATGGATGAGTATA 217 * * * * ** ** * consensus_5149#0 AGGCACTGATACAGCCCGT-TGTAGAGAGCTGGACCACGATCGCGATCCCAACGATCGAT 594 consensus_5149#2 ANGCACTGCTA-ATGTTGT-GGCACGTAACTCCACCACGATCGCGATCCCATCGATCGAT 90 consensus_5149#1 AGGCAGTCATTTTCGACATCTACGGTATTCCTCATTACCTGGAGGAGGAGTTCGGTTCAG 277 * *** * * * * * ** ** ** * * consensus_5149#0 TGGATCGATGAGAAC--AACATGAAGTATCGCGATGACAAGGCTCCCACCTTTGTC--GG 650 consensus_5149#2 TGGATCGATGAAAA---AGTATGGCGCTTATAGCGAACAAGTCGCTCTCCTACATC--GG 145 consensus_5149#1 TGGCATCACGCAAAGCCATCCGGGAGAGTGCAAATTGTAAGCCATTCCGCTACTACCTGG 337 *** * * ** * * * * *** * * ** * ** consensus_5149#0 TGCATACGATTG--GGACCTCAACTTTGGCTGGTGGGGTCGATGGTCTCAAAAAAAGCAG 708 consensus_5149#2 TGCGTACGATTG--GGATCTCAACTTTGGCTGGTGGTATCGCTCGTCTATGAAGAAGAAG 203 consensus_5149#1 AGAATGCATTCCCCGAGATGCACAATCCGCTCATATCGGGAGCTTTCCGTGGGGAGGTAA 397 * * * * * ** * *** * ** * * * consensus_5149#0 AACGAGAACAAGATGGAACCGTTCGATACGCCTGCCATGGCTGGAGGATTGTTCGCAATC 768 consensus_5149#2 TATGCAAACCTTCTCGAACCGTTTGATACGCCTGC-ATGGCTGGAGGATTGTTCGCGATC 262 consensus_5149#1 AGAGCGTCCTGCTAGGCAACGACACCTGCCTCGAATATAGTTCCGAGTTTCTCGGCA--T 455 * * * * ** * * * ** * * * ** * ** consensus_5149#0 AATAGGACGTT-CTTCGAGCGCATTGGATGGTAC--GAT-GATGGG-TTCGAT-ATCTAT 822 consensus_5149#2 AATAGGACGTT-TTTTGAGCGACTGGGGTGGTAC--GACCGATGGGGTTCGACCATCTAT 319 consensus_5149#1 GGCACGGTGTAACGGTGAGCAGACAACACAGTACTGGGCCCACAACTACTACCAGGAGAT 515 * * ** **** **** * * ** consensus_5149#0 -GGTATC-GAGAACATTGAACTTTCCGTTAAGAGTTGGATGTGTGGAGGGAAGATGGTCA 880 consensus_5149#2 -GGTATCCGAGAACATTGAGCTGTCGATGAAGAGTTGGATGTGTGGAGGGAAGATGGTGA 378 consensus_5149#1 CAACAGCTACAAGCACTGTTTGGACTACACCGGCGCCAGTCTCGGAGTGTTTGGCTGTCA 575 * * * ** ** * * * * * * * ** * consensus_5149#0 CAGTACCT-TGTTCTC----GAGTAGGGCACATCCAGAAGAC--GGGCCACCCG-TATCT 932 consensus_5149#2 CGGTTCCCCTGGCCTCCGCGGGGTAGGCCACATCCANAAGGTTGGGACAATCCGGTATCT 438 consensus_5149#1 TCGCTCACGTGGCAACCA-GGCGTGGCGTGTACTGACCGATACGGGACAACTCCAAAGCA 634 * * ** * * ** * * * ** * * * * * consensus_5149#0 TT----ACAAACAACCGAAAGACGTTGTG-CGT--GCGAAC-TCGATCC-GGCTGGCCGA 983 consensus_5149#2 TCCACAACCGAAAAGAANGGGACGTTGTGGCGTT-GCGAACCTCGATCCCGGCTG----- 492 consensus_5149#1 TCAAGCACGACCAATGTCTTGCGGTCAATACGTCTACAAACATTACGCT----------- 683 * ** ** * ** *** * *** * * consensus_5149#0 GGTGTGGATGGACGAGTACAA 1004 consensus_5149#2 --------------------- consensus_5149#1 --------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||