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Anopheles gambiae
cluster # 5149 cluster # 5149       Sequences # 4       consensus # 3


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_5149#0 length = 1004 sequences # 2  
consensus_5149#1 length = 683 sequences # 1  
consensus_5149#2 length = 492 sequences # 1  

consensusID : consensus_5149#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 1004
fasta sequence
                              [CCGCAACGCTGGGATTAGATCCACGTTTTCCGGTGCCACCGGGTGATATGGGAGTTTCGGTGGAGATCGACACTAACGACACCGACGTGACAGATCTGGTGAATCAAGGAATGATACATCAAGGGCTGAATCAGTTCTCTTCCGATCTGATGTCCGTACGGAGACGACTGCCGGAAATTCGAGACCCCTGGTGCCGCGAACCGGGTCGCTATCGTGCCGATCTACCCCCCACCTCGATTGTGATCGTGTTCTACAATGAAGCGTGGTCAGTGTTGGTACGCACGGTGCACTCCATTCTCGACCGATCGCCTCCGAATCTAGTGAGCGAAATAGTGCTCGTGGATGATTTCAGCTTTATGCCTCATTTGAAAGCCCAACTAGAGGAATACTTTGCCACCAACCCGAAAGTCCGAATCGTACGTGCTCCAAAAGCGACTTGGATTAATCAGAGCCCGCATGCTTGGTGGAAAGAGTACAAAAACCGATTTGATTACGTTCCTGGACGCGCACGTTGAAGTGACTGTGGGATGGCTGGAGGCACTGATACAGCCCGTTGTAGAGAGCTGGACCACGATCGCGATCCCAACGATCGATTGGATCGATGAGAACAACATGAAGTATCGCGATGACAAGGCTCCCACCTTTGTCGGTGCATACGATTGGGACCTCAACTTTGGCTGGTGGGGTCGATGGTCTCAAAAAAAGCAGAACGAGAACAAGATGGAACCGTTCGATACGCCTGCCATGGCTGGAGGATTGTTCGCAATCAATAGGACGTTCTTCGAGCGCATTGGATGGTACGATGATGGGTTCGATATCTATGGTATCGAGAACATTGAACTTTCCGTTAAGAGTTGGATGTGTGGAGGGAAGATGGTCACAGTACCTTGTTCTCGAGTAGGGCACATCCAGAAGACGGGCCACCCGTATCTTTACAAACAACCGAAAGACGTTGTGCGTGCGAACTCGATCCGGCTGGCCGAGGTGTGGATGGACGAGTACAA]

[+] EMBL BM631737             [CCGCAACGCTGGGATTAGATCCACGTTTTCCGGTGCCACCGGGTGATATGGGAGTTTCGGTGGAGATCGACACTAACGACACCGACGTGACAGATCTGGTGAATCAAGGAATGATACATCAAGGGCTGAATCAGTTCTCTTCCGATCTGATGTCCGTACGGAGACGACTGCCGGAAATTCGAGACCCCTGGTGCCGCGAACCGGGTCGCTATCGTGCCGATCTACCCCCCACCTCGATTGTGATCGTGTTCTACAATGAAGCGTGGTCAGTGTTGGTACGCACGGTGCACTCCATTCTCGACCGATCGCCTCCGAATCTAGTGAGCGAAATAGTGCTCGTGGATGATTTCAGCTTTATGCCTCATTTGAAAGCCCAACTAGAGGAATACTTTGCCACCAACCCGAAAGTCCGAATCGTACGTGCTCCAAAAGCGACTTGGATTAATCAGAGCCCGCATGCTTGGTGGAAAGAGTACAAAAACCGATTTGATTACGT                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                            ]
[+] EMBL BM596309             [                                                                                                                                                                                                                                                                                                                                                             ccggTTGATAGCTCATTTGAAAGCCCAACTAGAGGAGTACTTTGCCACCAACCCGAAAGTCCGAATCGTACGTGCTCC AAAGCGACTTGGATTAATCAGAGCCCGCATGCTTGGTGGAAAGAGTACAAAGACCGATTTGATTACGTTCCTGGACGCGCACGTTGAAGTGACTGTGGGATGGCTGGAGGCACTGATACAGCCCGTTGTAGAGAGCTGGACCACGATCGCGATCCCAACGATCGATTGGATCGATGAGAACAACATGAAGTATCGCGATGACAAGGCTCCCACCTTTGTCGGTGCATACGATTGGGACCTCAACTTTGGCTGGTGGGGTCGATGGTCTCAAAAAAAGCAGAACGAGAACAAGATGGAACCGTTCGATACGCCTGCCATGGCTGGAGGATTGTTCGCAATCAATAGGACGTTCTTCGAGCGCATTGGATGGTACGATGATGGGTTCGATATCTATGGTATCGAGAACATTGAACTTTCCGTTAAGAGTTGGATGTGTGGAGGGAAGATGGTCACAGTACCTTGTTCTCGAGTAGGGCACATCCAGAAGACGGGCCACCCGTATCTTTACAAACAACCGAAAGACGTTGTGCGTGCGAACTCGATCCGGCTGGCCGAGGTGTGGATGGACGAGTACAA]


>consensus_5149#0 CCGCAACGCTGGGATTAGATCCACGTTTTCCGGTGCCACCGGGTGATATGGGAGTTTCGG TGGAGATCGACACTAACGACACCGACGTGACAGATCTGGTGAATCAAGGAATGATACATC AAGGGCTGAATCAGTTCTCTTCCGATCTGATGTCCGTACGGAGACGACTGCCGGAAATTC GAGACCCCTGGTGCCGCGAACCGGGTCGCTATCGTGCCGATCTACCCCCCACCTCGATTG TGATCGTGTTCTACAATGAAGCGTGGTCAGTGTTGGTACGCACGGTGCACTCCATTCTCG ACCGATCGCCTCCGAATCTAGTGAGCGAAATAGTGCTCGTGGATGATTTCAGCTTTATGC CTCATTTGAAAGCCCAACTAGAGGAATACTTTGCCACCAACCCGAAAGTCCGAATCGTAC GTGCTCCAAAAGCGACTTGGATTAATCAGAGCCCGCATGCTTGGTGGAAAGAGTACAAAA ACCGATTTGATTACGTTCCTGGACGCGCACGTTGAAGTGACTGTGGGATGGCTGGAGGCA CTGATACAGCCCGTTGTAGAGAGCTGGACCACGATCGCGATCCCAACGATCGATTGGATC GATGAGAACAACATGAAGTATCGCGATGACAAGGCTCCCACCTTTGTCGGTGCATACGAT TGGGACCTCAACTTTGGCTGGTGGGGTCGATGGTCTCAAAAAAAGCAGAACGAGAACAAG ATGGAACCGTTCGATACGCCTGCCATGGCTGGAGGATTGTTCGCAATCAATAGGACGTTC TTCGAGCGCATTGGATGGTACGATGATGGGTTCGATATCTATGGTATCGAGAACATTGAA CTTTCCGTTAAGAGTTGGATGTGTGGAGGGAAGATGGTCACAGTACCTTGTTCTCGAGTA GGGCACATCCAGAAGACGGGCCACCCGTATCTTTACAAACAACCGAAAGACGTTGTGCGT GCGAACTCGATCCGGCTGGCCGAGGTGTGGATGGACGAGTACAA



consensusID : consensus_5149#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 683
fasta sequence
                              [CCGCTGGGGTGGTACGACGATGGGTTCGACATCTATGGTATCGAGAACATTGAGCTGTCGATGAAGAGTTGGATGTGTGGAGGGAAGATGGTGACGGTTCCCTGCTCGCGGGTAGGCCACATCCAGAAGGTTGGACATCCGTATCTTCACAACGAAAAGAAGGACGTTGTGCGTGCGAACTCGATCCGGCTGGCCGAGGTGTGGATGGATGAGTATAAGGCAGTCATTTTCGACATCTACGGTATTCCTCATTACCTGGAGGAGGAGTTCGGTTCAGTGGCATCACGCAAAGCCATCCGGGAGAGTGCAAATTGTAAGCCATTCCGCTACTACCTGGAGAATGCATTCCCCGAGATGCACAATCCGCTCATATCGGGAGCTTTCCGTGGGGAGGTAAAGAGCGTCCTGCTAGGCAACGACACCTGCCTCGAATATAGTTCCGAGTTTCTCGGCATGGCACGGTGTAACGGTGAGCAGACAACACAGTACTGGGCCCACAACTACTACCAGGAGATCAACAGCTACAAGCACTGTTTGGACTACACCGGCGCCAGTCTCGGAGTGTTTGGCTGTCATCGCTCACGTGGCAACCAGGCGTGGCGTGTACTGACCGATACGGGACAACTCCAAAGCATCAAGCACGACCAATGTCTTGCGGTCAATACGTCTACAAACATTACGCT]

[+] EMBL BM602203             [CCGCTGGGGTGGTACGACGATGGGTTCGACATCTATGGTATCGAGAACATTGAGCTGTCGATGAAGAGTTGGATGTGTGGAGGGAAGATGGTGACGGTTCCCTGCTCGCGGGTAGGCCACATCCAGAAGGTTGGACATCCGTATCTTCACAACGAAAAGAAGGACGTTGTGCGTGCGAACTCGATCCGGCTGGCCGAGGTGTGGATGGATGAGTATAAGGCAGTCATTTTCGACATCTACGGTATTCCTCATTACCTGGAGGAGGAGTTCGGTTCAGTGGCATCACGCAAAGCCATCCGGGAGAGTGCAAATTGTAAGCCATTCCGCTACTACCTGGAGAATGCATTCCCCGAGATGCACAATCCGCTCATATCGGGAGCTTTCCGTGGGGAGGTAAAGAGCGTCCTGCTAGGCAACGACACCTGCCTCGAATATAGTTCCGAGTTTCTCGGCATGGCACGGTGTAACGGTGAGCAGACAACACAGTACTGGGCCCACAACTACTACCAGGAGATCAACAGCTACAAGCACTGTTTGGACTACACCGGCGCCAGTCTCGGAGTGTTTGGCTGTCATCGCTCACGTGGCAACCAGGCGTGGCGTGTACTGACCGATACGGGACAACTCCAAAGCATCAAGCACGACCAATGTCTTGCGGTCAATACGTCTACAAACATTACGCT]


>consensus_5149#1 CCGCTGGGGTGGTACGACGATGGGTTCGACATCTATGGTATCGAGAACATTGAGCTGTCG ATGAAGAGTTGGATGTGTGGAGGGAAGATGGTGACGGTTCCCTGCTCGCGGGTAGGCCAC ATCCAGAAGGTTGGACATCCGTATCTTCACAACGAAAAGAAGGACGTTGTGCGTGCGAAC TCGATCCGGCTGGCCGAGGTGTGGATGGATGAGTATAAGGCAGTCATTTTCGACATCTAC GGTATTCCTCATTACCTGGAGGAGGAGTTCGGTTCAGTGGCATCACGCAAAGCCATCCGG GAGAGTGCAAATTGTAAGCCATTCCGCTACTACCTGGAGAATGCATTCCCCGAGATGCAC AATCCGCTCATATCGGGAGCTTTCCGTGGGGAGGTAAAGAGCGTCCTGCTAGGCAACGAC ACCTGCCTCGAATATAGTTCCGAGTTTCTCGGCATGGCACGGTGTAACGGTGAGCAGACA ACACAGTACTGGGCCCACAACTACTACCAGGAGATCAACAGCTACAAGCACTGTTTGGAC TACACCGGCGCCAGTCTCGGAGTGTTTGGCTGTCATCGCTCACGTGGCAACCAGGCGTGG CGTGTACTGACCGATACGGGACAACTCCAAAGCATCAAGCACGACCAATGTCTTGCGGTC AATACGTCTACAAACATTACGCT



consensusID : consensus_5149#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 492
fasta sequence
                              [CGCCCACGTTTATGTTCGCAAGGGATGGCTGGANGCACTGCTAATGTTGTGGCACGTAACTCCACCACGATCGCGATCCCATCGATCGATTGGATCGATGAAAAAGTATGGCGCTTATAGCGAACAAGTCGCTCTCCTACATCGGTGCGTACGATTGGGATCTCAACTTTGGCTGGTGGTATCGCTCGTCTATGAAGAAGAAGTATGCAAACCTTCTCGAACCGTTTGATACGCCTGCATGGCTGGAGGATTGTTCGCGATCAATAGGACGTTTTTTGAGCGACTGGGGTGGTACGACCGATGGGGTTCGACCATCTATGGTATCCGAGAACATTGAGCTGTCGATGAAGAGTTGGATGTGTGGAGGGAAGATGGTGACGGTTCCCCTGGCCTCCGCGGGGTAGGCCACATCCANAAGGTTGGGACAATCCGGTATCTTCCACAACCGAAAAGAANGGGACGTTGTGGCGTTGCGAACCTCGATCCCGGCTG]

[+] EMBL AL694242             [CGCCCACGTTTATGTTCGCAAGGGATGGCTGGANGCACTGCTAATGTTGTGGCACGTAACTCCACCACGATCGCGATCCCATCGATCGATTGGATCGATGAAAAAGTATGGCGCTTATAGCGAACAAGTCGCTCTCCTACATCGGTGCGTACGATTGGGATCTCAACTTTGGCTGGTGGTATCGCTCGTCTATGAAGAAGAAGTATGCAAACCTTCTCGAACCGTTTGATACGCCTGCATGGCTGGAGGATTGTTCGCGATCAATAGGACGTTTTTTGAGCGACTGGGGTGGTACGACCGATGGGGTTCGACCATCTATGGTATCCGAGAACATTGAGCTGTCGATGAAGAGTTGGATGTGTGGAGGGAAGATGGTGACGGTTCCCCTGGCCTCCGCGGGGTAGGCCACATCCANAAGGTTGGGACAATCCGGTATCTTCCACAACCGAAAAGAANGGGACGTTGTGGCGTTGCGAACCTCGATCCCGGCTG]


>consensus_5149#2 CGCCCACGTTTATGTTCGCAAGGGATGGCTGGANGCACTGCTAATGTTGTGGCACGTAAC TCCACCACGATCGCGATCCCATCGATCGATTGGATCGATGAAAAAGTATGGCGCTTATAG CGAACAAGTCGCTCTCCTACATCGGTGCGTACGATTGGGATCTCAACTTTGGCTGGTGGT ATCGCTCGTCTATGAAGAAGAAGTATGCAAACCTTCTCGAACCGTTTGATACGCCTGCAT GGCTGGAGGATTGTTCGCGATCAATAGGACGTTTTTTGAGCGACTGGGGTGGTACGACCG ATGGGGTTCGACCATCTATGGTATCCGAGAACATTGAGCTGTCGATGAAGAGTTGGATGT GTGGAGGGAAGATGGTGACGGTTCCCCTGGCCTCCGCGGGGTAGGCCACATCCANAAGGT TGGGACAATCCGGTATCTTCCACAACCGAAAAGAANGGGACGTTGTGGCGTTGCGAACCT CGATCCCGGCTG



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_5149#0      CCGCAACGCTGGGATTAGATCCACGTTTTCCGGTGCCACCGGGTGATATGGGAGTTTCGG 60
consensus_5149#2      ------------------------------------------------------------
consensus_5149#1      ------------------------------------------------------------
                                                                                  

consensus_5149#0      TGGAGATCGACACTAACGACACCGACGTGACAGATCTGGTGAATCAAGGAATGATACATC 120
consensus_5149#2      ------------------------------------------------------------
consensus_5149#1      ------------------------------------------------------------
                                                                                  

consensus_5149#0      AAGGGCTGAATCAGTTCTCTTCCGATCTGATGTCCGTACGGAGACGACTGCCGGAAATTC 180
consensus_5149#2      ------------------------------------------------------------
consensus_5149#1      ------------------------------------------------------------
                                                                                  

consensus_5149#0      GAGACCCCTGGTGCCGCGAACCGGGTCGCTATCGTGCCGATCTACCCCCCACCTCGATTG 240
consensus_5149#2      ------------------------------------------------------------
consensus_5149#1      ------------------------------------------------------------
                                                                                  

consensus_5149#0      TGATCGTGTTCTACAATGAAGCGTGGTCAGTGTTGGTACGCACGGTGCACTCCATTCTCG 300
consensus_5149#2      ------------------------------------------------------------
consensus_5149#1      ------------------------------------------------------------
                                                                                  

consensus_5149#0      ACCGATCGCCTCCGAATCTAGTGAGCGAAATAGTGCTCGTGGATGATTTCAGCTTTATGC 360
consensus_5149#2      ------------------------------------------------------------
consensus_5149#1      ---------------------CCGCTGGGGTGGTAC--GACGATGGGTTCGACATCTATG 37
                                                                                  

consensus_5149#0      CTCATTTGAAAGCCCAACTA--GAGGAATACTTTGCCACCAACCCGAAAGTCCG-AATCG 417
consensus_5149#2      ------------------------------------------------------------
consensus_5149#1      GTATCGAGAACATTGAGCTGTCGATGAAGAGTTGGATGTGTGGAGGGAAGATGGTGACGG 97
                                                                                  

consensus_5149#0      TACGTGCTCCAAAAGCGACTTGGATTAATCAGAGCCCGCATGCTTGG--TGGAAAGAGTA 475
consensus_5149#2      ------------------------------------------------------------
consensus_5149#1      TTCCCTGCTCGCGGGTAGGCCACATCCAGAAGGTTGGACATCCGTATCTTCACAACGAAA 157
                                                                                  

consensus_5149#0      CAAAAACCGATTTGATTACGTTCCTGGACGCGCACGTTGAAGTGACTGTGGGATGGCTGG 535
consensus_5149#2      ----------------------------CGCCCACGTTTATGTTCGCAAGGGATGGCTGG 32
consensus_5149#1      AGAAGGACGTTGTGCGTGCGAACTCGATCCGGCTGGCCGAGGTGTGGATGGATGAGTATA 217
                                                  *   *  *   * **      **    *    

consensus_5149#0      AGGCACTGATACAGCCCGT-TGTAGAGAGCTGGACCACGATCGCGATCCCAACGATCGAT 594
consensus_5149#2      ANGCACTGCTA-ATGTTGT-GGCACGTAACTCCACCACGATCGCGATCCCATCGATCGAT 90
consensus_5149#1      AGGCAGTCATTTTCGACATCTACGGTATTCCTCATTACCTGGAGGAGGAGTTCGGTTCAG 277
                      * *** *  *        *          *   *  **      **      ** *  * 

consensus_5149#0      TGGATCGATGAGAAC--AACATGAAGTATCGCGATGACAAGGCTCCCACCTTTGTC--GG 650
consensus_5149#2      TGGATCGATGAAAA---AGTATGGCGCTTATAGCGAACAAGTCGCTCTCCTACATC--GG 145
consensus_5149#1      TGGCATCACGCAAAGCCATCCGGGAGAGTGCAAATTGTAAGCCATTCCGCTACTACCTGG 337
                      ***    * *  **   *    *  *  *         *** *   *  **    *  **

consensus_5149#0      TGCATACGATTG--GGACCTCAACTTTGGCTGGTGGGGTCGATGGTCTCAAAAAAAGCAG 708
consensus_5149#2      TGCGTACGATTG--GGATCTCAACTTTGGCTGGTGGTATCGCTCGTCTATGAAGAAGAAG 203
consensus_5149#1      AGAATGCATTCCCCGAGATGCACAATCCGCTCATATCGGGAGCTTTCCGTGGGGAGGTAA 397
                       *  * *  *    *     **   *  ***  *           **       * * * 

consensus_5149#0      AACGAGAACAAGATGGAACCGTTCGATACGCCTGCCATGGCTGGAGGATTGTTCGCAATC 768
consensus_5149#2      TATGCAAACCTTCTCGAACCGTTTGATACGCCTGC-ATGGCTGGAGGATTGTTCGCGATC 262
consensus_5149#1      AGAGCGTCCTGCTAGGCAACGACACCTGCCTCGAATATAGTTCCGAGTTTCTCGGCA--T 455
                         *    *      * * **     * *  *    ** * *    * ** *  **    

consensus_5149#0      AATAGGACGTT-CTTCGAGCGCATTGGATGGTAC--GAT-GATGGG-TTCGAT-ATCTAT 822
consensus_5149#2      AATAGGACGTT-TTTTGAGCGACTGGGGTGGTAC--GACCGATGGGGTTCGACCATCTAT 319
consensus_5149#1      GGCACGGTGTAACGGTGAGCAGACAACACAGTACTGGGCCCACAACTACTACCAGGAGAT 515
                         * *  **      ****          ****  *    *                **

consensus_5149#0      -GGTATC-GAGAACATTGAACTTTCCGTTAAGAGTTGGATGTGTGGAGGGAAGATGGTCA 880
consensus_5149#2      -GGTATCCGAGAACATTGAGCTGTCGATGAAGAGTTGGATGTGTGGAGGGAAGATGGTGA 378
consensus_5149#1      CAACAGCTACAAGCACTGTTTGGACTACACCGGCGCCAGTCTCGGAGTGTTTGGCTGTCA 575
                          * *    * ** **      *      *       * *  *   *   *   ** *

consensus_5149#0      CAGTACCT-TGTTCTC----GAGTAGGGCACATCCAGAAGAC--GGGCCACCCG-TATCT 932
consensus_5149#2      CGGTTCCCCTGGCCTCCGCGGGGTAGGCCACATCCANAAGGTTGGGACAATCCGGTATCT 438
consensus_5149#1      TCGCTCACGTGGCAACCA-GGCGTGGCGTGTACTGACCGATACGGGACAACTCCAAAGCA 634
                        *  *   **    *    * ** *     *   *        ** * *  *   * * 

consensus_5149#0      TT----ACAAACAACCGAAAGACGTTGTG-CGT--GCGAAC-TCGATCC-GGCTGGCCGA 983
consensus_5149#2      TCCACAACCGAAAAGAANGGGACGTTGTGGCGTT-GCGAACCTCGATCCCGGCTG----- 492
consensus_5149#1      TCAAGCACGACCAATGTCTTGCGGTCAATACGTCTACAAACATTACGCT----------- 683
                      *     **    **      *  **     ***   * *** *    *            

consensus_5149#0      GGTGTGGATGGACGAGTACAA 1004
consensus_5149#2      ---------------------
consensus_5149#1      ---------------------
                                           




Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner    (hubert.wassner@noos.fr)