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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5154#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1235 fasta sequence
[CCGCGGACGCGTGGGGCTCGGGCAAGTAGTGAAAATATTGTCGGTGTGGTTGAGGTGGAAGTGTTCCAAGTTTTACAGTATTTCAGTAAACATTCAGGTACCAGGGGTGAACTAAAGTGACGAAAGAAAACAAAATATGCTCCAGCAATTAGGTACATTCCTAATCCTGCTGGTTGCTGCAGCCCACTTCACTAGCTGCACTGAAGTTCCAGCAGATCGAGTGGATCCAGAAACAGAGCCTACCGAACAACAACCACGAAATAGAACATGTAACGGTATTTGTGTGATATATTTCCAATGCCATGAGAACAAGATCGTACCGCCCATGTTGGGTAAACGGTTCGTCCCGGACGACAGCGAACCCGAATGCCCGTACCGTAAGTACGTTTGCTGCGAAAAACGCTCCGCGCTGGAGGGACCACGGACGACCACTGGCAAGCCTACGAGTGATGCAACGTGTGGGTTCCGCAGCAGGAAACGCACATTCCCGTGGATGGTGATCGTTTACCGCGAGGAGCTGGACGATCCTACAAACCAGCTGTTCTACCAGTGTGGCGCTTCGTTGATCGCACCGAACGTTGCCCTCACGGTGGCCCATTGCGTGCTGGACCAACCGAAGGAGCGGCTCGTGATACGCGCCGGCGAATGGCGCCTAGAAACGGAACATCAGAACCGCCGGGTGGCCCAGCTCATCACACGCAAAGCGTCGAACGTGCACTCACTGGCGAACGATGTCGCCCTGATCGTTCTCTCCGAACCGTTCCAGCTGACGGAAACCATACAACCGATCTGTCTCCCACCGAAGGGAACATCCTTCGATCGAAGCGATTGCTTCACGGTCGGCTGGGACAGAATAATCGTCTGCGATGGATACGCGATGCTGGTGAAGCGAACATGGGGAGAGCAAGCCGTTGTGCCGCATGACGTTTGCCCGCACGTACTGCCTCCGATGCGACCTGTACAGCCGTTCCTGTGCGCGGGCGGCGTTATCACGCAGGACATGTGCCCACGTAACTCGACCGGCTTTCCGCTAGTGTGTCCCATTCCGGGCTCGCCACACCACTACTACCAGGCAGGTATTGTCGCGATGCCCAACGGGTGTGATGACAATGGCGCTCCGGGCATATTCGTCCAGGTGGGCGCACTACCGTGACTGGATCAACCAGCAGCTGGTGCAGCGCAAAATCCCCGCACGGGACTACATCTACNAAATTGCGAATACCAAGCTGTCAAAA]
[+] EMBL BM631869 [CCGCGGACGCGTGGGGCTCGGGCAAGTAGTGAAAATATTGTCGGTGTGGTTGAGGTGGAAGTGTTCCAAGTTTTACAGTATTTCAGTAAACATTCAGGTACCAGGGGTGAACTAAAGTGACGAAAGAAAACAAAATATGCTCCAGCAATTAGGTACATTCCTAATCCTGCTGGTTGCTGCAGCCCACTTCACTAGCTGCACTGAAGTTCCAGCAGATCGAGTGGATCCAGAAACAGAGCCTACCGAACAACAACCACGAAATAGAACATGTAACGGTATTTGTGTGATATATTTCCAATGCCATGAGAACAAGATCGTACCGCCCATGTTGGGTAAACGGTTCGTCCCGGACGACAGCGAACCCGAATGCCCGTACCGTAAGTACGTTTGCTGCGAAAAACGCTCCGCGCTGGAGGGACCACGGACGACCACTGGCAAGCCTACGAGTGATGCAACGTGTGGGTTCCGCAGCAGGAAACGCACATTCCCGTGGATGGTGATCGTTTACCGCGAGGAGCTGGACGATCCTACAAACCAGCTGTTCTACCAGTGTGGCGCTTCGTTGATCGCACCGAACGTTGCCCTCACGGTGGCCCATTGCGTGCTGGACCAACCGAAGGAGCGGCTCGTGATACGCGCCGGCGAATGGCGCCTAGAAACGGAACATCAGAACCGCCGGGTGGCCCAGCTCATCACA ]
[+] EMBL BX625572 [ CGCGCTGGAGGGACCACGGACGACCACTGGCAAGCCTACGAGTGATGCAAAGTGTGGGTTCCGCAGCAGGAAACGCACATTCCCGTGGATGGTGATCGTTTACCGCGAGGAGCTGGACGATCCTACAAACCAGCTGTTCTACCAGTGTGGCGCTTCGTTGATCGCACCGAACGTTGCCCTCACGGTGGCCCATTGCGTGCTGGACCAACCGAAGGAGCGGCTCGTGATACGCGCCGGCGAATGGCGCCTAGAAACGGAACATCAGAACCGCCGGGTGGCCCAGCTCATCACACGCAAAGCGTCGAACGTGCACTCACTGGCGAACGATGTCGCCCTGATCGTTCTCTCCGAACCGTTCCAGCTGACGGAAACCATACAACCGATCTGTCTCCCACCGAAGGGAACATCCTTCGATCGAAGCGATTGCTTCACGGTCGGCTGGGACAGAATAATCGTCTGCGATGGATACGCGATGCTGGTGAAGCGAACATGGGGAGAGCAAGCCGTTGTGCCGCATGACGTTTGCCCGCACGTACTGCCTCCGATGCGACCTGTACAGCCGTTCCTGTGCGCGGGCGGCGTTATCACGCAGGACATGTGCCCACGTAACTCGACCGGCTTTCCGCTAGTGTGTCCCATTCCGGGCTCGCCACACCACTACTACCAGGCAGGTATTGTCGCGATGCCCAACGGGTGTGATGACAATGGCGCTCCGGGCATATTCGTCCAGGTGGGCGCACTACCGTGACTGGATCAACCAGCAGCTGGTGCAGCGCAAAATCCCCGCACGGGACTACATCTACNAAATTGCGAATACCAAGCTGTCAAAA]
consensusID : consensus_5154#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 624 fasta sequence
[CCGCCCACGCGTCCGCCCACGCGTCCGTTTCGCTTGCTATAGAACTGCTCGGGCAAGTAGTGAAAATATTGTCGGTGTGGTTGAGGTGGAAGTGTTCCAAGTTTTACAGTATTTTAGTAAAAATTCAGGTACCAGGGGTGAACTAAAGTGACGAAAGAAAACAAAATATGCTCCAGCAATTAGGTACATTCCTAACCCTGCTGGCTGCGGCAGCCCACTTCACTAGCTGCACTGAAGTTCCAACAGATCGTGTGGTTCCAGAAACAGAGCCTACCGAACAACAACCACGAAATAGAACATGTAACGGTATTTGTGTGATATATTTCCAATGCCATGAGAACAAGATCGTACCGCCCATGTTGGGTAAACGGTTCGTCCCGGACGACAGCGAACCCGAATGCCCGTACCGTAAGTACGTTTGCTGCGAAAAACGCTCCGCGCTGGAGGGACCACGGACGACCACTGGCAAGCCTACGAGTGATGCAACGTGTGGGTTCCGCAGCAGGAAAAGCACATTCCCGTGGAAGGTGATCGTTTACCGCGAGGAGCTGGACGATCCTACAAACCAGCTGTTCTACCAGTGTGGCGCTTCGTTGATCGCACCAAACGTTGCCCTCACGGTGG]
[+] EMBL BM648486 [CCGCCCACGCGTCCGCCCACGCGTCCGTTTCGCTTGCTATAGAACTGCTCGGGCAAGTAGTGAAAATATTGTCGGTGTGGTTGAGGTGGAAGTGTTCCAAGTTTTACAGTATTTTAGTAAAAATTCAGGTACCAGGGGTGAACTAAAGTGACGAAAGAAAACAAAATATGCTCCAGCAATTAGGTACATTCCTAACCCTGCTGGCTGCGGCAGCCCACTTCACTAGCTGCACTGAAGTTCCAACAGATCGTGTGGTTCCAGAAACAGAGCCTACCGAACAACAACCACGAAATAGAACATGTAACGGTATTTGTGTGATATATTTCCAATGCCATGAGAACAAGATCGTACCGCCCATGTTGGGTAAACGGTTCGTCCCGGACGACAGCGAACCCGAATGCCCGTACCGTAAGTACGTTTGCTGCGAAAAACGCTCCGCGCTGGAGGGACCACGGACGACCACTGGCAAGCCTACGAGTGATGCAACGTGTGGGTTCCGCAGCAGGAAAAGCACATTCCCGTGGAAGGTGATCGTTTACCGCGAGGAGCTGGACGATCCTACAAACCAGCTGTTCTACCAGTGTGGCGCTTCGTTGATCGCACCAAACGTTGCCCTCACGGTGG]
consensusID : consensus_5154#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 583 fasta sequence
[CCCCAGGATTAGTTTGCTGCGAAAAACGCTCCGCGCTGGAGGGACCACGGACGACCACTGGCAAGCCTACGAGTGATGCAAAGTGTGGGTTCCGCAGCAGGAAACGCACATTCCCGTGGATGGTGATCGTTTACCGCGAGGAGCTGGACGATCCTACAAACCAGCTGTTCTACCAGTGTGGCGCTTCGTTGATCGCACCGAACGTTGCCCTCACGGTGGCCCATTGCGTGCTGGACCAACCGAAGGAGCGGCTCGTGATACGCGCCGGCGAATGGCGCCTAGAAACGGAACATCAGAACCGCCGGGTGGCCCAGCTCATCACACGCAAAGCGTCGAACGTGCACTCACTGGCGAACGATGTCGCCCTGATCGTTCTCTCCGAACCGTTCCAGCTGACGGAAACCATACAACCGATCTGTCTCCCACCGAAGGGAACATCCTTCGATCGAAGCGATTGCTTCACGGTCGGCTGGGACAGAATAATCGTCTGCGATGGATTACCGCGATGCTGGTGAAGCGAACATGGGGAGAGCAAGCCGTTGTGCCGCATGACGTTTGGCCGACGTTACTGGCTCCGATGCGA]
[+] EMBL AL694294 [CCCCAGGATTAGTTTGCTGCGAAAAACGCTCCGCGCTGGAGGGACCACGGACGACCACTGGCAAGCCTACGAGTGATGCAAAGTGTGGGTTCCGCAGCAGGAAACGCACATTCCCGTGGATGGTGATCGTTTACCGCGAGGAGCTGGACGATCCTACAAACCAGCTGTTCTACCAGTGTGGCGCTTCGTTGATCGCACCGAACGTTGCCCTCACGGTGGCCCATTGCGTGCTGGACCAACCGAAGGAGCGGCTCGTGATACGCGCCGGCGAATGGCGCCTAGAAACGGAACATCAGAACCGCCGGGTGGCCCAGCTCATCACACGCAAAGCGTCGAACGTGCACTCACTGGCGAACGATGTCGCCCTGATCGTTCTCTCCGAACCGTTCCAGCTGACGGAAACCATACAACCGATCTGTCTCCCACCGAAGGGAACATCCTTCGATCGAAGCGATTGCTTCACGGTCGGCTGGGACAGAATAATCGTCTGCGATGGATTACCGCGATGCTGGTGAAGCGAACATGGGGAGAGCAAGCCGTTGTGCCGCATGACGTTTGGCCGACGTTACTGGCTCCGATGCGA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_5154#0 CCGCGGACGCGTGGGGCTCGGGCAAGTAGTGAAAATATTGTCGGTGTGGTTGAGGTGGAA 60
consensus_5154#2 ------------------------------------------------------------
consensus_5154#1 ------------------------------------------------------------
consensus_5154#0 GTGTTCCAAGTTTTACAGTATTTCAGTAAACATTCAGGTACCAGGGGTGAACTAAAGTGA 120
consensus_5154#2 ------------------------------------------------------------
consensus_5154#1 ------------------------------------------------------------
consensus_5154#0 CGAAAGAAAACAAAATATGCTCCAGCAATTAGGTACATTCCTAATCCTGCTGGTTGCTGC 180
consensus_5154#2 ------------------------------------------------------------
consensus_5154#1 ------------------------------------------------------------
consensus_5154#0 AGCCCACTTCACTAGCTGCACTGAAGTTCCAGCAGATCGAGTGGATCCAGAAACAGAGCC 240
consensus_5154#2 ------------------------------------------------------------
consensus_5154#1 ------------------------------------------------------------
consensus_5154#0 TACCGAACAACAACCACGAAATAGAACATGTAACGGTATTTGTGTGATATATTTCCAATG 300
consensus_5154#2 ------------------------------------------------------------
consensus_5154#1 ------------------------------------------------------------
consensus_5154#0 CCATGAGAACAAGATCGTACCGCCCATGTTGGGTAAACGGTTCGTCCCGGACGACAGCGA 360
consensus_5154#2 ------------------------------------------------------------
consensus_5154#1 ------------------------------------------------------------
consensus_5154#0 ACCCGAATGCCCGTACCGTAAGTACGTTTGCTGCGAAAAACGCTCCGC--GCTGGAGGGA 418
consensus_5154#2 -------------CCCCAGGATTA-GTTTGCTGCGAAAAACGCTCCGC--GCTGGAGGGA 44
consensus_5154#1 ---------------CCGCCCACGCGTCCGCCCACGCGTCCGTTTCGCTTGCTATAGAAC 45
** ** ** ** * *** *** **
consensus_5154#0 C-CACGGACGACCACTGGCAAGCCTACGAGTGATGC-AACGTGTGGGTTCCGCAGCAGGA 476
consensus_5154#2 C-CACGGACGACCACTGGCAAGCCTACGAGTGATGC-AAAGTGTGGGTTCCGCAGCAGGA 102
consensus_5154#1 TGCTCGGGCAAGTAGTGAAAATATTGTCGGTGTGGTTGAGGTGGAAGTGTTCCA-----A 100
* *** * * * ** ** * *** * * *** ** ** *
consensus_5154#0 AACGCACATTCCCGTGGATGGTGATCGTTTACCGCGAG-GAGCTGGA-CGATCCTACAAA 534
consensus_5154#2 AACGCACATTCCCGTGGATGGTGATCGTTTACCGCGAG-GAGCTGGA-CGATCCTACAAA 160
consensus_5154#1 GTTTTACAGTATTTTAGTAAAAATTCAGGTACCAGGGGTGAACTAAAGTGACGAAAGAAA 160
*** * * * ** **** * * ** ** * ** * ***
consensus_5154#0 CCAGC---TGTTCTACCAGTGTGGCGCTTCGTTGATCGCACCGAACGTTGCCCTCACGGT 591
consensus_5154#2 CCAGC---TGTTCTACCAGTGTGGCGCTTCGTTGATCGCACCGAACGTTGCCCTCACGGT 217
consensus_5154#1 ACAAAATATGCTCCAGCAATTAGGTACATTCCTAACCCTGCTGGCTGCGGCAGCCCACTT 220
** ** ** * ** * ** * * * * * * * * ** * *
consensus_5154#0 GGCCCATTGCG-TGCTGGACCAACCGAAGGAGCGGCTCGTGATACGCG--CCGGCGAATG 648
consensus_5154#2 GGCCCATTGCG-TGCTGGACCAACCGAAGGAGCGGCTCGTGATACGCG--CCGGCGAATG 274
consensus_5154#1 CACTAGCTGCACTGAAGTTCCAACAGATCGTGTGGTTCCAGAAACAGAGCCTACCGAACA 280
* *** ** * ***** ** * * ** ** ** ** * ****
consensus_5154#0 GCGCCTA-GAAACGGAACATCAGA--ACCGCCGGGTGGCCCAGCTC----ATCACACGCA 701
consensus_5154#2 GCGCCTA-GAAACGGAACATCAGA--ACCGCCGGGTGGCCCAGCTC----ATCACACGCA 327
consensus_5154#1 ACAACCACGAAATAGAACATGTAACGGTATTTGTGTGATATATTTCCAATGCCATGAGAA 340
* * * **** ****** * * *** * ** ** * *
consensus_5154#0 AAGCGTCGAACGTGCACTCACTGGCGAACGATGTCGCCCTGATCGTTCTC---TCCGAA- 757
consensus_5154#2 AAGCGTCGAACGTGCACTCACTGGCGAACGATGTCGCCCTGATCGTTCTC---TCCGAA- 383
consensus_5154#1 CAAGATCGTACCGCCCATGTTGGGTAAACGGT-TCGTCCCGGACGACAGCGAACCCGAAT 399
* *** ** * * ** **** * *** ** * ** * *****
consensus_5154#0 --CCGTTCCAGCTG-ACGGAAACCAT-ACAACCGATCTGTCTC-------CCACCGAAGG 806
consensus_5154#2 --CCGTTCCAGCTG-ACGGAAACCAT-ACAACCGATCTGTCTC-------CCACCGAAGG 432
consensus_5154#1 GCCCGTACCGTAAGTACGTTTGCTGCGAAAAACGCTCCGCGCTGGAGGGACCACGGACGA 459
**** ** * *** * * ** ** ** * **** ** *
consensus_5154#0 GAAC-----ATCCTTCGATCGAAGCGAT-TGCTTCACGGTCGGCTGGGACAGAATAATCG 860
consensus_5154#2 GAAC-----ATCCTTCGATCGAAGCGAT-TGCTTCACGGTCGGCTGGGACAGAATAATCG 486
consensus_5154#1 CCACTGGCAAGCCTACGAGTGATGCAACGTGTGGGTTCCGCAGCAGGAAAAGCACATTCC 519
** * *** *** ** ** * ** * ** ** * ** * * **
consensus_5154#0 TCTGCGATGGATA--CGCGATGCTGGTGAAGCGAACATGGGGAGAGCAAGCCGTTGTGCC 918
consensus_5154#2 TCTGCGATGGATTACCGCGATGCTGGTGAAGCGAACATGGGGAGAGCAAGCCGTTGTGCC 546
consensus_5154#1 CGTGGAAGGTGATCGTTTACCGCGAGGAGCTGGACGATCCTACAAACCAGCTGTTCTACC 579
** * * ** * ** ** * * *** *** * **
consensus_5154#0 -GCATGACGTTTGCCCGCACGTACTGC-CTCCGATGCGACCTGTACAGCCGTTCCTGTGC 976
consensus_5154#2 -GCATGACGTTTGGCCGACGTTACTGG-CTCCGATGCGA--------------------- 583
consensus_5154#1 AGTGTGGCGCTTCGTTGATCGCACCAAACGTTGCCCTCACGGTGG--------------- 624
* ** ** ** * ** * * *
consensus_5154#0 GCGGGCGGCGTTATCACGCAGGACATGTGCCCACGTAACTCGACCGGCTTTCCGCTAGTG 1036
consensus_5154#2 ------------------------------------------------------------
consensus_5154#1 ------------------------------------------------------------
consensus_5154#0 TGTCCCATTCCGGGCTCGCCACACCACTACTACCAGGCAGGTATTGTCGCGATGCCCAAC 1096
consensus_5154#2 ------------------------------------------------------------
consensus_5154#1 ------------------------------------------------------------
consensus_5154#0 GGGTGTGATGACAATGGCGCTCCGGGCATATTCGTCCAGGTGGGCGCACTACCGTGACTG 1156
consensus_5154#2 ------------------------------------------------------------
consensus_5154#1 ------------------------------------------------------------
consensus_5154#0 GATCAACCAGCAGCTGGTGCAGCGCAAAATCCCCGCACGGGACTACATCTACNAAATTGC 1216
consensus_5154#2 ------------------------------------------------------------
consensus_5154#1 ------------------------------------------------------------
consensus_5154#0 GAATACCAAGCTGTCAAAA 1235
consensus_5154#2 -------------------
consensus_5154#1 -------------------
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||