These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5155#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 815 fasta sequence [CCTGCGCGAGCATCAGCCGCGCGTGCTGGAAACCCTGTCCGGGCTGCTGAACGTGCCCAAGATGATCAAGGAGGCGCACACGAAGGGTGCGGTCGTCTATCTGCTCGATCTGTTCTGCAACTCCAACAACCCGGCGATACGGGAACAGTGTGCCGAGCTGCTGGCGAAGATGAACGCGGACAAGCTGAGCGGGCCGAAGGTGCGCATCACGCTGTGCAAGTATCTGCCGCCCGTCTTCCTGGACGCGATGATCGACTCCACCTCGGTGGCGGTGCAGATGTACGAGTCGACGCACGANCACCCGGAGCTGATCTGGAACGACGACATCCGGGCGTGCGTGTCGGACGCGGTGCGCGACGCGGCGGACAGCTTCCACGTGCAGCAGCGGCGCAACGCCAAGGCGGCCTGGCGCGATCCGGAGATACTGCCCGAGCTGCTGTCGAGCGAGGTGGTCGTGTCGGGCGTGTACTTGCGCCTGTACGTGTCCAATCCGGGCTGGACGCTGCGCAAACCGAAACAGTTCCTGGCCGACCTGCTGGACTTCATCGTGGACAGTATCAGCCGGAGCGGCATGGACAGGGACGTGCTGGATCTGGCCACGACCGCNCTGGTGCTGCTGCTGAACGCACAGCCCAACCTGGCCGACTCGATACCGGTGCTGGGGCACATACCGAAGTTTTTCCGCCAGCTTTCCGTTCAGCCAAAGAGTGCCCTCACAGTATTGCATCAGTTTTCCCTTTCGGAGATCTGTGTCAGCGCAATCTCCCAAACGGAATGTATACCGTCGTTGAAATCTTGCATGGAGCACCATCGGG] [+] EMBL BX625653 [CCTGCGCGAGCATCAGCCGCGCGTGCTGGAAACCCTGTCCGGGCTGCTGAACGTGCCCAAGATGATCAAGGAGGCGCACACGAAGGGTGCGGTCGTCTATCTGCTCGATCTGTTCTGCAACTCCAACAACCCGGCGATACGGGAACAGTGTGCCGAGCTGCTGGCGAAGATGAACGCGGACAAGCTGAGCGGGCCGAAGGTGCGCATCACGCTGTGCAAGTATCTGCCGCCCGTCTTCCTGGACGCGATGATCGACTCCACCTCGGTGGCGGTGCAGATGTACGAGTCGACGCACGANCACCCGGAGCTGATCTGGAACGACGACATCCGGGCGTGCGTGTCGGACGCGGTGCGCGACGCGGCGGACAGCTTCCACGTGCAGCAGCGGCGCAACGCCAAGGCGGCCTGGCGCGATCCGGAGATACTGCCCGAGCTGCTGTCGAGCGAGGTGGTCGTGTCGGGCGTGTACTTGCGCCTGTACGTGTCCAATCCGGGCTGGACGCTGCGCAAACCGAAACAGTTCCTGGCCGACCTGCTGGACTTCATCGTGGACAGTATCAGCCGGAGCGGCATGGACAGGGACGTGCTGGATCTGGCCACGACCGCNCTGGTGCTGCTGCTGAACGCACAGCCCAACCTGGCCGACTCGATACCGGTGCTGGGGCACATACCGAAGTTTTTCCGCCAGCTTTCCGTTCAGCCAAAGAGTGCCCTCACAGTATTGCATCAGTTTTCCCTTTCGGAGATCTGTGTCAGCGCAATCTCCCAAACGGAATGTATACCGTCGTTGAAATCTTGCATGGAGCACCATCGGG] consensusID : consensus_5155#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 566 fasta sequence [GCCAGATCGCACGAGGTGTCAACCTCACGTACGGCGATCGGGCTCACGCATCTGCTCAACCAGTACCCGATCTGGGCGGAGTACCGTGACCAGAAGCACGATCTCTTCATAACCGATACGGACGTGCGCGGATATCTAATGGGCGCACCGAACACGACCGCTGGCTATTTGACGCAAGGGCCGGCAAAGAACGTCGAAGTGCTCACTTCGCCACCGGNCCATCGATCGGGATGATCCACTGTTTGCGCGCAGCAACAGCAGCGGTGGGAGTGTGTAGTAGTACGCACACGTGCTACTGTACCCTACCGTGCACCCCGCGGGAGTAGTCCCATTATTTGTTATATATGGGGTGTACGCGTATTGTTTCGTTTTTTCTGTTCGGTTGGANATCGTTTCCCGTGGTGGACCAGTGCGTGTACATTTGGTAAGGGTAGGTGTGGTGGCATTTACAGNATGNTGGATGGAAAAGACAGGTGGAGGCCCAATACGTTTGCGTTAGCCAACNTTCNCNGCGTAGCCACACGNGAAGCGGCATGNGGAGGCCAACAATTGGGGTCCGGCTTAAT] [+] EMBL BX469181 [GCCAGATCGCACGAGGTGTCAACCTCACGTACGGCGATCGGGCTCACGCATCTGCTCAACCAGTACCCGATCTGGGCGGAGTACCGTGACCAGAAGCACGATCTCTTCATAACCGATACGGACGTGCGCGGATATCTAATGGGCGCACCGAACACGACCGCTGGCTATTTGACGCAAGGGCCGGCAAAGAACGTCGAAGTGCTCACTTCGCCACCGGNCCATCGATCGGGATGATCCACTGTTTGCGCGCAGCAACAGCAGCGGTGGGAGTGTGTAGTAGTACGCACACGTGCTACTGTACCCTACCGTGCACCCCGCGGGAGTAGTCCCATTATTTGTTATATATGGGGTGTACGCGTATTGTTTCGTTTTTTCTGTTCGGTTGGANATCGTTTCCCGTGGTGGACCAGTGCGTGTACATTTGGTAAGGGTAGGTGTGGTGGCATTTACAGNATGNTGGATGGAAAAGACAGGTGGAGGCCCAATACGTTTGCGTTAGCCAACNTTCNCNGCGTAGCCACACGNGAAGCGGCATGNGGAGGCCAACAATTGGGGTCCGGCTTAAT] consensusID : consensus_5155#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 559 fasta sequence [AATCCCCGAGGTTATCTAGTAGCTGGTTCCTCCGAAGTCCTTTCGGAGATCTGTGTCAGCGCAATCTCCCAAACGGAATGTATACCGTCGTTGAAATCTTGCATGGAGCACCATCGGGATCTGACGTCGACGGCGTGCGAAACGTTGAGTCGATTATTCAAATGTCAGCATGATTCACTGATACGTCAATCACTCGAGTGTCAATTAATTCCCTACCTGGTCGCGCTGCTCGACAGCCGGCTCGTGCTGGCGAACAATCCGGCCATGGTGAAGGCGCAGATTGTTGCCACGCTGAAAGCGATGAGCGCCAAACTCACGTACGGCGATCGGGTCACGCATCTGTCAACCAGTACCCGATCTGGGCGGAGTACCGTGACCAGAAGCACGATCTCTTCATAACCGATACGGACGTGCGCGGATATCTAATGGGCGCACCGAATACGACCGCTGGCTATTTGACGCAAGGGCCGGCAAAGAACGTCGAAGTGCTCACTTCGCACCGCCATCGATCGCGATGATCCACTATTTGCGCGCAGCAACAGCAGCGGTGGGAGTGTGT] [+] EMBL AL694372 [AATCCCCGAGGTTATCTAGTAGCTGGTTCCTCCGAAGTCCTTTCGGAGATCTGTGTCAGCGCAATCTCCCAAACGGAATGTATACCGTCGTTGAAATCTTGCATGGAGCACCATCGGGATCTGACGTCGACGGCGTGCGAAACGTTGAGTCGATTATTCAAATGTCAGCATGATTCACTGATACGTCAATCACTCGAGTGTCAATTAATTCCCTACCTGGTCGCGCTGCTCGACAGCCGGCTCGTGCTGGCGAACAATCCGGCCATGGTGAAGGCGCAGATTGTTGCCACGCTGAAAGCGATGAGCGCCAAACTCACGTACGGCGATCGGGTCACGCATCTGTCAACCAGTACCCGATCTGGGCGGAGTACCGTGACCAGAAGCACGATCTCTTCATAACCGATACGGACGTGCGCGGATATCTAATGGGCGCACCGAATACGACCGCTGGCTATTTGACGCAAGGGCCGGCAAAGAACGTCGAAGTGCTCACTTCGCACCGCCATCGATCGCGATGATCCACTATTTGCGCGCAGCAACAGCAGCGGTGGGAGTGTGT] consensusID : consensus_5155#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 420 fasta sequence [CAGATCGCACGAGGTGTACATGGAGCACATCGGGATCTCGACGTCGACGGCGTGCGAAACGTTGAGTCGATTATTCAAATGTCAGCATGATTCACTGATACGTCAATCACTCGAGTGTCAATTAATTCCCTACCTGGTCGCGCTGCTCGACAGCCGGCTCGTGCTGGCGAACAATCCGGCCATGGGTGAAGGCGCAGATTGTTGCCACGCTGAAAGCGATGAGCGCCAACCTCACGGTACGGCGATCGGGTCACGCATCTGCCTCAACCAGTACCCGATCTGGGCGGAGTACCGTGACCAGAAGCACGATACTCTTCATAACCGATACGGACGTGCGCGGATATCTAATGGGCGCACCGACAGTACGACCGCCTGGACTATTTGACGCAAGGGCCGGCAAAGAACGTCGAAGTGCTCACT] [+] EMBL BX469491 [CAGATCGCACGAGGTGTACATGGAGCACATCGGGATCTCGACGTCGACGGCGTGCGAAACGTTGAGTCGATTATTCAAATGTCAGCATGATTCACTGATACGTCAATCACTCGAGTGTCAATTAATTCCCTACCTGGTCGCGCTGCTCGACAGCCGGCTCGTGCTGGCGAACAATCCGGCCATGGGTGAAGGCGCAGATTGTTGCCACGCTGAAAGCGATGAGCGCCAACCTCACGGTACGGCGATCGGGTCACGCATCTGCCTCAACCAGTACCCGATCTGGGCGGAGTACCGTGACCAGAAGCACGATACTCTTCATAACCGATACGGACGTGCGCGGATATCTAATGGGCGCACCGACAGTACGACCGCCTGGACTATTTGACGCAAGGGCCGGCAAAGAACGTCGAAGTGCTCACT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_5155#2 ------------------------------------------------------------ consensus_5155#3 ------------------------------------------------------------ consensus_5155#1 ------------------------------------------------------------ consensus_5155#0 CCTGCGCGAGCATCAGCCGCGCGTGCTGGAAACCCTGTCCGGGCTGCTGAACGTGCCCAA 60 consensus_5155#2 -------------AATCCCCGAGGTTATCTAGTAGCTGGTTCCTCCGAAGTCCTTTCGGA 47 consensus_5155#3 ------------------------------------------------------------ consensus_5155#1 --------------------------GCCAGATCGCACGAGGTGTCAACCTCACGTACGG 34 consensus_5155#0 GATGATCAAGGAGGCGCACACGAAGGGTGCGGTCGTCTATCTGCTCGATCTGTTCTGCAA 120 consensus_5155#2 GATCTGTGTCAGCGCAATCTCCCAAACGGAATGT-ATACCGTCGTTGAAATCTTGCATGG 106 consensus_5155#3 -------------------------------------CAGATCGCACGAGGTGTACATGG 23 consensus_5155#1 CGATCGGGCTCACGCATCTGCTCAACCAGTACCCGATCTGGGCGGAGTACCGTGACCAGA 94 consensus_5155#0 CTCCAACAACCCGGCGAT-ACGGGAACAGTGTGCCGAGCTGCTGGCGAAGATGAACGCGG 179 * * * * consensus_5155#2 AGCA--CCATCGGGATCT-GACGTCGACGGCG-TGCG-AAACGTTGAGTCGATTATTCAA 161 consensus_5155#3 AGCA--C-ATCGGGATCTCGACGTCGACGGCG-TGCG-AAACGTTGAGTCGATTATTCAA 78 consensus_5155#1 AGCA--CGATCTCTTCATAACCGATACGGACG-TGCGCGGATATCTAATGGGCGCACCGA 151 consensus_5155#0 ACAAGCTGAGCGGGCCGAAGGTGCGCATCACGCTGTGCAAGTATCT-GCCGCCCGTCTTC 238 * * * * * ** ** * * * consensus_5155#2 ATGTCAGCA-TGATTCACT--GATACGTCAATCACTCGAG--TGTCAATTAATTCCCTAC 216 consensus_5155#3 ATGTCAGCA-TGATTCACT--GATACGTCAATCACTCGAG--TGTCAATTAATTCCCTAC 133 consensus_5155#1 ACACGACCGCTGGCTATTT--GACGCAAGGGCCGGCAAAGAACGTCGAAGTGCTCACTTC 209 consensus_5155#0 CTGGACGCGATGATCGACTCCACCTCGGTGGCGGTGCAGATGTACGAGTCGACGCACGAN 298 * ** * * * * consensus_5155#2 CTGGTCGCGCTGCTCGACAGCCGGCTCG--TGCTGGCGAACAATCCGGCCATGG-TGAAG 273 consensus_5155#3 CTGGTCGCGCTGCTCGACAGCCGGCTCG--TGCTGGCGAACAATCCGGCCATGGGTGAAG 191 consensus_5155#1 GCCACCGGNCCATCGATCGGGATGATCCACTGTTTGCGCGCAGCAACAGCAGCGGTGGGA 269 consensus_5155#0 CACCCGGAGCTGATCTGGAACGACGACA--TCCGGGCGTGCGTGTCGGACGCGGTGCGCG 356 * * * * *** * * * consensus_5155#2 GCGCAGATTGTTGC-CACGCTGAAAGCGATG----AGCGCCAAACTCACG-TACGGCGAT 327 consensus_5155#3 GCGCAGATTGTTGC-CACGCTGAAAGCGATG----AGCGCCAACCTCACGGTACGGCGAT 246 consensus_5155#1 GTGTGTAGTAGTACGCACACGTGCTACTGTACCCTACCGTGCACCCCGCG--GGAGTAGT 327 consensus_5155#0 ACGCGGCGGACAGCTTCCACGTGCAGCAGCGGCGCAACGCCAAGGCGGCC-TGGCGCGAT 415 * * * * * * ** * * * * consensus_5155#2 CGGGTCACGCATCTG--TCAACCAGTACCCGATCTGGGCG-GAGTACCGTGACCAGAAGC 384 consensus_5155#3 CGGGTCACGCATCTGCCTCAACCAGTACCCGATCTGGGCG-GAGTACCGTGACCAGAAGC 305 consensus_5155#1 CCCATTATTTGTTATATATGGGGTGTACGCGTATTGTTTC-GTTTTTTCTGTTCGGTTGG 386 consensus_5155#0 CCGGAGATACTGCCCGAGCTGCTGTCGAGCGAGGTGGTCGTGTCGGGCGTGTACTTGCGC 475 * * ** ** * ** * * consensus_5155#2 ACGAT-CTCTTCATAACCGATACGGACG-TGCGCGGATATCTAA------TGGGCGCACC 436 consensus_5155#3 ACGATACTCTTCATAACCGATACGGACG-TGCGCGGATATCTAA------TGGGCGCACC 358 consensus_5155#1 ANATCGTTTCCCGTGGTGGACCAGTGCG-TGTACATTTGGTAAGGG----TAGGTGTGGT 441 consensus_5155#0 CTGTACGTGTCCA-ATCCGGGCTGGACGCTGCGCAAACCGAAACAGTTCCTGGCCGACCT 534 * * * * ** ** * * * * * consensus_5155#2 GA---ATACGACCGCT--GGCTATTTGACGCAAGGGCC-GGCAAAGAACGTCGAAGTGCT 490 consensus_5155#3 GACA-GTACGACCGCCTGGACTATTTGACGCAAGGGCC-GGCAAAGAACGTCGAAGTGCT 416 consensus_5155#1 GGCA-TTTACAGNATGNTGGATGGAAAAGACAGGTGGA-GGCCCAATACGTT--TGCGTT 497 consensus_5155#0 GCTGGACTTCATCGTGGACAGTATCAGCCGGAGCGGCATGGACAGGGACGTGCTGGATCT 594 * * * * * ** **** * * consensus_5155#2 CACTTCG--CACCGCCATCGATCGCGATGATCCACTATTTGCGCGCAGCAAC--AGCAGC 546 consensus_5155#3 CACT-------------------------------------------------------- 420 consensus_5155#1 AGCCAAC--NTTCNCNGCGTAGCCACACGNGAAGCGGCATGNGGAGGCCAAC--AATTGG 553 consensus_5155#0 GGCCACGACCGCNCTGGTGCTGCTGCTGAACGCACAGCCCAACCTGGCCGACTCGATACC 654 * consensus_5155#2 GGTGGGAGTGTGT----------------------------------------------- 559 consensus_5155#3 ------------------------------------------------------------ consensus_5155#1 GGTCCGGCTTAAT----------------------------------------------- 566 consensus_5155#0 GGTGCTGGGGCACATACCGAAGTTTTTCCGCCAGCTTTCCGTTCAGCCAAAGAGTGCCCT 714 consensus_5155#2 ------------------------------------------------------------ consensus_5155#3 ------------------------------------------------------------ consensus_5155#1 ------------------------------------------------------------ consensus_5155#0 CACAGTATTGCATCAGTTTTCCCTTTCGGAGATCTGTGTCAGCGCAATCTCCCAAACGGA 774 consensus_5155#2 ----------------------------------------- consensus_5155#3 ----------------------------------------- consensus_5155#1 ----------------------------------------- consensus_5155#0 ATGTATACCGTCGTTGAAATCTTGCATGGAGCACCATCGGG 815 |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||