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Anopheles gambiae
cluster # 5156 cluster # 5156       Sequences # 4       consensus # 3


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_5156#0 length = 841 sequences # 2  
consensus_5156#1 length = 509 sequences # 1  
consensus_5156#2 length = 229 sequences # 1  

consensusID : consensus_5156#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 841
fasta sequence
                              [TGCCTGCGTGGTATACTGTGTAGTGTATATCTTTTCCTCTCCCTGCCCTCTTACCACCCCCCCCCCACCCCCCCAAGCTGAAGCTAGCCAACTTCATGCATACACATAATCGCTTCGCAACGTTGTACTTATGCTGTGCGTATATAACCGCTGCAAACCATACTCCTACTCCTTCTCCCAAAACCCATGTCCTTTTACCGTCGTAATTTTTATTCTCTCTGTCTCTGAGTGTGTGT--GTGAG--TG-TGTGATGGGAGCAAAAGATCGAAGCCGATTTTAGTAAAATAAGCTAAGCTAGTTTACTGCAAACAATTGCAAGCTTGCACTCTGCGGTGCACGATCGCGAAATACAGACATAAACACACATACAACACACAAAATGTGGAAGAAATTTAAACGTAAATAAAAAAAACCCTGTTTGTAGTTAAATTATTCAATTTTACCGATTAGTAAACGAATCGCAAATGTTAGCAAGTGTGCGGGGGGGGGGGGTGCGTGTTGTACAAATCCAAACAAAAAACAGGAACGAGGAATTGTTTGTTTAGTCGTCGTCCTTCCCTCCCATCCCAATATACTTCCACCCATTTCTTCGTACTTATAAGCATAGAGGGAAGTTTGAAGAAAACGTGCGAATCGGGTTGCATTAGAAACCTTAATTCTTGGTGTGTTTTATGTACGTCTAAATATGTTTGTGTGCGTGTGTGTGCGTGTGTGTGTAAAGTTTGTCTAATTTGGCAGAAAGATAAATTAGAGGCGGACTCCACAACAACAGCTTTGCAGTTTTAATGCAATTAGACAACATTGTTGTCCAGAATTGTACACATTTTGNTTATAAATCGCATGA]

[+] EMBL BX608600             [TGCCTGCGTGGTATACTGTGTAGTGTATATCTTTTCCTCTCCCTGCCCTCTTACCACCCCCCCCCCACCCCCCCAAGCTGAAGCTAGCCAACTTCATGCATACACATAATCGCTTCGCAACGTTGTACTTATGCTGTGCGTATATAACCGCTGCAAACCATACTCCTACTCCTTCTCCCAAAACCCATGTCCTTTTACCGTCGTAATTTTTATTCTCTCTGTCTCTGAGTGTGTGT  GTGAG  TG TGTGATGGGAGCAAAAGATCGAAGCCGATTTTAGTAAAATAAGCTAAGCTAGTTTACTGCAAACAATTGCAAGCTTGCACTCTGCGGTGCACGATCGCGAAATACAGACATAAACACACATACAACACACAAAATGTGGAAGAAATTTAAACGTAAATAAAAAAAACCCTGTTTGTAGTTAAATTATTCAATTTTACCGATTAGTAAACGAATCGCAAATGTTAGCAAGTGTGCGGGGGGGGGGGGTGCGTGTTGTACAAATCCAAACAAAAAACAGGAACGAGGAATTGTTTGTTTAGTCGTCGTCCTTCCCTCCCATCCCAATATACTTCCACCCATTTCTTC                                                                                                                                                                                                                                                             ]
[+] EMBL BX621592             [                                                                                                                            GTACTTATGCTGTGCGTATATAACCGCTGCAAACCATACTCCTACTCCTTCTCCCAAAACCCATGTCCTTTTACCGTCGTAATTTTTATTCTCTCTGTCTCTGAGTGTGTGTGAGTGTGTATGATGAGATGGGAGCAAAAGATCGAAGCCGATTTTAGTAAAATAAACTAAGCTAGTTTACTGCAAACAATTGCAAGCTTGCACTCTGCGGTGCACGATCGCGAAATACAAACATAAACACACATACAACACACAAAATGTGGAAGAAATTAAAACGTAAATAAAAAAAACCCTGTTTGTAGTTAAATTATTCAATTTTACCGATTAGTAAACGAATCGCAAATGTAAGCAAGTGTGC      GGTGGGTGCGTGTTGTACAAAAACAAACAAAAAACAGGAACGAGGAATTGTTTGTTTAGTCGTTGTCCTTCCCTCCCATCCCAATATACTTCCACCCATTTCTTCGTACTTATAAGCATAGAGGGAAGTTTGAAGAAAACGTGCGAATCGGGTTGCATTAGAAACCTTAATTCTTGGTGTGTTTTATGTACGTCTAAATATGTTTGTGTGCGTGTGTGTGCGTGTGTGTGTAAAGTTTGTCTAATTTGGCAGAAAGATAAATTAGAGGCGGACTCCACAACAACAGCTTTGCAGTTTTAATGCAATTAGACAACATTGTTGTCCAGAATTGTACACATTTTGNTTATAAATCGCATGA]


>consensus_5156#0 TGCCTGCGTGGTATACTGTGTAGTGTATATCTTTTCCTCTCCCTGCCCTCTTACCACCCC CCCCCCACCCCCCCAAGCTGAAGCTAGCCAACTTCATGCATACACATAATCGCTTCGCAA CGTTGTACTTATGCTGTGCGTATATAACCGCTGCAAACCATACTCCTACTCCTTCTCCCA AAACCCATGTCCTTTTACCGTCGTAATTTTTATTCTCTCTGTCTCTGAGTGTGTGTGTGA GTGTGTGATGGGAGCAAAAGATCGAAGCCGATTTTAGTAAAATAAGCTAAGCTAGTTTAC TGCAAACAATTGCAAGCTTGCACTCTGCGGTGCACGATCGCGAAATACAGACATAAACAC ACATACAACACACAAAATGTGGAAGAAATTTAAACGTAAATAAAAAAAACCCTGTTTGTA GTTAAATTATTCAATTTTACCGATTAGTAAACGAATCGCAAATGTTAGCAAGTGTGCGGG GGGGGGGGGTGCGTGTTGTACAAATCCAAACAAAAAACAGGAACGAGGAATTGTTTGTTT AGTCGTCGTCCTTCCCTCCCATCCCAATATACTTCCACCCATTTCTTCGTACTTATAAGC ATAGAGGGAAGTTTGAAGAAAACGTGCGAATCGGGTTGCATTAGAAACCTTAATTCTTGG TGTGTTTTATGTACGTCTAAATATGTTTGTGTGCGTGTGTGTGCGTGTGTGTGTAAAGTT TGTCTAATTTGGCAGAAAGATAAATTAGAGGCGGACTCCACAACAACAGCTTTGCAGTTT TAATGCAATTAGACAACATTGTTGTCCAGAATTGTACACATTTTGNTTATAAATCGCATG A



consensusID : consensus_5156#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 509
fasta sequence
                              [GCCCGAGGTTACACACAAAATGTGGAAGAAATTTAAACGTAATAAAAAAACCCTGTTTGTAGTTAATTATTCAATTTTACCGATTAGTAAACGAATCGCAAATGTTAGCAAGTGTGCGGGGGGGGGGGGTGCGTGTTGTACAAATACAAACAAAAAACAGGAACGAGGAATTGTTTGGTTAGTCGTCGTCTTCCCTCCCATCCCAATATATTCCACCATTTCTTCGTACTTATTAGCATAGGGAAGTTAAAGAAAACGTGCGAATCGGGTTGCATTAGAAACCTTAATTCTTGGTGTGTTTTATGTACGTCTAAATATGTTTGTGTGCGTGTGTGTGCCTGTGTGTGTAGAGTTTGTCCAATTTGACAGAAAGATAAATTAGAGGCGGACTCCACAACAACAGCTTTGCACGTTTTAATGCAATTAGACAACATTGTTGTCCAGAATTGTACACATTTTGTTTATAAATCGATGATCGCCGTGCAAGGTAAATAACACAAAAAAAATCC]

[+] EMBL AL694375             [GCCCGAGGTTACACACAAAATGTGGAAGAAATTTAAACGTAATAAAAAAACCCTGTTTGTAGTTAATTATTCAATTTTACCGATTAGTAAACGAATCGCAAATGTTAGCAAGTGTGCGGGGGGGGGGGGTGCGTGTTGTACAAATACAAACAAAAAACAGGAACGAGGAATTGTTTGGTTAGTCGTCGTCTTCCCTCCCATCCCAATATATTCCACCATTTCTTCGTACTTATTAGCATAGGGAAGTTAAAGAAAACGTGCGAATCGGGTTGCATTAGAAACCTTAATTCTTGGTGTGTTTTATGTACGTCTAAATATGTTTGTGTGCGTGTGTGTGCCTGTGTGTGTAGAGTTTGTCCAATTTGACAGAAAGATAAATTAGAGGCGGACTCCACAACAACAGCTTTGCACGTTTTAATGCAATTAGACAACATTGTTGTCCAGAATTGTACACATTTTGTTTATAAATCGATGATCGCCGTGCAAGGTAAATAACACAAAAAAAATCC]


>consensus_5156#1 GCCCGAGGTTACACACAAAATGTGGAAGAAATTTAAACGTAATAAAAAAACCCTGTTTGT AGTTAATTATTCAATTTTACCGATTAGTAAACGAATCGCAAATGTTAGCAAGTGTGCGGG GGGGGGGGGTGCGTGTTGTACAAATACAAACAAAAAACAGGAACGAGGAATTGTTTGGTT AGTCGTCGTCTTCCCTCCCATCCCAATATATTCCACCATTTCTTCGTACTTATTAGCATA GGGAAGTTAAAGAAAACGTGCGAATCGGGTTGCATTAGAAACCTTAATTCTTGGTGTGTT TTATGTACGTCTAAATATGTTTGTGTGCGTGTGTGTGCCTGTGTGTGTAGAGTTTGTCCA ATTTGACAGAAAGATAAATTAGAGGCGGACTCCACAACAACAGCTTTGCACGTTTTAATG CAATTAGACAACATTGTTGTCCAGAATTGTACACATTTTGTTTATAAATCGATGATCGCC GTGCAAGGTAAATAACACAAAAAAAATCC



consensusID : consensus_5156#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 229
fasta sequence
                              [AAGAAATTTAAACGTAAATAAAAAAAACCCTGGGTTTTTTGGGGTAAAGGGTTTTTAAAAATTTATTCAAGTTTTACGATTAGTAACGAATCGCAAATGGTTAGCAAAGGTGGTGCGGGGGGGGCGGGGTGCGTGTTGTACAAATACAAACAAAAAACAGGAACGAGGAATTGTTTGTTTAGTCGTCGTCCTTCCCTCCCATCCCAATATACTTCCACCATTTCTTCGT]

[+] EMBL AL695989             [AAGAAATTTAAACGTAAATAAAAAAAACCCTGGGTTTTTTGGGGTAAAGGGTTTTTAAAAATTTATTCAAGTTTTACGATTAGTAACGAATCGCAAATGGTTAGCAAAGGTGGTGCGGGGGGGGCGGGGTGCGTGTTGTACAAATACAAACAAAAAACAGGAACGAGGAATTGTTTGTTTAGTCGTCGTCCTTCCCTCCCATCCCAATATACTTCCACCATTTCTTCGT]


>consensus_5156#2 AAGAAATTTAAACGTAAATAAAAAAAACCCTGGGTTTTTTGGGGTAAAGGGTTTTTAAAA ATTTATTCAAGTTTTACGATTAGTAACGAATCGCAAATGGTTAGCAAAGGTGGTGCGGGG GGGGCGGGGTGCGTGTTGTACAAATACAAACAAAAAACAGGAACGAGGAATTGTTTGTTT AGTCGTCGTCCTTCCCTCCCATCCCAATATACTTCCACCATTTCTTCGT



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_5156#0      TGCCTGCGTGGTATACTGTGTAGTGTATATCTTTTCCTCTCCCTGCCCTCTTACCACCCC 60
consensus_5156#1      ------------------------------------------------------------
consensus_5156#2      ------------------------------------------------------------
                                                                                  

consensus_5156#0      CCCCCCACCCCCCCAAGCTGAAGCTAGCCAACTTCATGCATACACATAATCGCTTCGCAA 120
consensus_5156#1      ------------------------------------------------------------
consensus_5156#2      ------------------------------------------------------------
                                                                                  

consensus_5156#0      CGTTGTACTTATGCTGTGCGTATATAACCGCTGCAAACCATACTCCTACTCCTTCTCCCA 180
consensus_5156#1      ------------------------------------------------------------
consensus_5156#2      ------------------------------------------------------------
                                                                                  

consensus_5156#0      AAACCCATGTCCTTTTACCGTCGTAATTTTTATTCTCTCTGTCTCTGAGTGTGTGTGTGA 240
consensus_5156#1      ------------------------------------------------------------
consensus_5156#2      ------------------------------------------------------------
                                                                                  

consensus_5156#0      GTGTGTGATGGGAGCAAAAGATCGAAGCCGATTTTAGTAAAATAAGCTAAGCTAGTTTAC 300
consensus_5156#1      ------------------------------------------------------------
consensus_5156#2      ------------------------------------------------------------
                                                                                  

consensus_5156#0      TGCAAACAATTGCAAGCTTGCACTCTGCGGTGCACGATCGCGAAATACAGACATAAACAC 360
consensus_5156#1      --------------------------------------------------------GCCC 4
consensus_5156#2      ----------------------------------------------------------AA 2
                                                                                  

consensus_5156#0      ACATACAACACACAAAATGTGGAAGAAATTTAAACGTAAATAAAAAAAACCCTGTTTGTA 420
consensus_5156#1      G-AGGTTACACACAAAATGTGGAAGAAATTTAAACGTAAT--AAAAAAACCCTGTTTGTA 61
consensus_5156#2      GAAATTTAAACGTAAA---TAAAAAAAACCCTGGGTTTTTTGGGGTAAAGGGTTTTTAAA 59
                        *    * **  ***   *  ** ***        *         ***   * ***  *

consensus_5156#0      GTTAAATTATTCAATTTTACCGATTAGTAAACGAATCGCAAATG-TTAGCAAGTGTG--- 476
consensus_5156#1      GTTAA-TTATTCAATTTTACCGATTAGTAAACGAATCGCAAATG-TTAGCAAGTGTG--- 116
consensus_5156#2      ---AATTTATTCAAGTTTTACGATTAGTAA-CGAATCGCAAATGGTTAGCAAAGGTGGTG 115
                         ** ******** ***  ********** ************* *******  ***   

consensus_5156#0      CGGGGGGGG-GGGGTGCGTGTTGTACAAATCCAAACAAAAAACAGGAACGAGGAATTGTT 535
consensus_5156#1      CGGGGGGGG-GGGGTGCGTGTTGTACAAATACAAACAAAAAACAGGAACGAGGAATTGTT 175
consensus_5156#2      CGGGGGGGGCGGGGTGCGTGTTGTACAAATACAAACAAAAAACAGGAACGAGGAATTGTT 175
                      ********* ******************** *****************************

consensus_5156#0      TGTTTAGTCGTCGTCCTTCCCTCCCATCCCAATATACTTCCACCCATTTCTTCGTACTTA 595
consensus_5156#1      TGGTTAGTCGTCGTC-TTCCCTCCCATCCCAATATA-TTCCACC-ATTTCTTCGTACTTA 232
consensus_5156#2      TGTTTAGTCGTCGTCCTTCCCTCCCATCCCAATATACTTCCACC-ATTTCTTCGT----- 229
                      ** ************ ******************** ******* **********     

consensus_5156#0      TAAGCATAGAGGGAAGTTTGAAGAAAACGTGCGAATCGGGTTGCATTAGAAACCTTAATT 655
consensus_5156#1      TTAGCATAG--GGAAGTT-AAAGAAAACGTGCGAATCGGGTTGCATTAGAAACCTTAATT 289
consensus_5156#2      ------------------------------------------------------------
                                                                                  

consensus_5156#0      CTTGGTGTGTTTTATGTACGTCTAAATATGTTTGTGTGCGTGTGTGTGCGTGTGTGTGTA 715
consensus_5156#1      CTTGGTGTGTTTTATGTACGTCTAAATATGTTTGTGTGCGTGTGTGTGCCTGTGTGTGTA 349
consensus_5156#2      ------------------------------------------------------------
                                                                                  

consensus_5156#0      AAGTTTGTCTAATTTGGCAGAAAGATAAATTAGAGGCGGACTCCACAACAACAGCTTTGC 775
consensus_5156#1      GAGTTTGTCCAATTTGACAGAAAGATAAATTAGAGGCGGACTCCACAACAACAGCTTTGC 409
consensus_5156#2      ------------------------------------------------------------
                                                                                  

consensus_5156#0      A-GTTTTAATGCAATTAGACAACATTGTTGTCCAGAATTGTACACATTTTGNTTATAAAT 834
consensus_5156#1      ACGTTTTAATGCAATTAGACAACATTGTTGTCCAGAATTGTACACATTTTGTTTATAAAT 469
consensus_5156#2      ------------------------------------------------------------
                                                                                  

consensus_5156#0      CGCATGA---------------------------------- 841
consensus_5156#1      CG-ATGATCGCCGTGCAAGGTAAATAACACAAAAAAAATCC 509
consensus_5156#2      -----------------------------------------
                                                               




Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner    (hubert.wassner@noos.fr)