These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5158#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 740 fasta sequence [CCGAAATAAACAAATACCAAATTGTGTGCCCGGTGCGTGATAAAAAAGGAAGGTGATCGTTTTTGATACAGCCGAGGCCTTACACACTTCCCAACTTCCGGTGGGTGGTGCATTCGCTTATCAAAATGAAATTTCGCTTCTGCGGTGATGGCGACTGTCCCGATTGGGTGCTGGCCGAAATCCATTCCAATCTGGCCCAACTCACCACCAGCCAGCTGAACGATCTCGGCGAACATACGGCCAAATCGATTCTAGGAGAAGAAATACCGGAGGCTGAGATTAGCAAAATCTATTCCATCACTAAAGGTTCCATGGACGGGCCGAAGGGCGGTATCGCTTGTTTACGGTTTCTGCTTACCAGTGCCTCTCGGTACAACACGGAGAGTGCAGAATTCAGCACGGAACTGCAGCAGCTCGGATTGCCGAAGGAGCATACCGCCATCCTCTGTCGGCTGCTGGACGACTACGTGCAAAAGATACGGGCCGTACTGCGGGAGAAAAGTTTAAGCATCAATCAGCTGGACACCTTCAGTTGCAGCATTCCGAAGAATACGATCGACTGCATTCAGCTCAAGATCGGGATACAGAACGAGATAGTGGACGGGTTGCCGAGAAAAACGGCCCACACCGTGAATCTCAACCGCAACAATGCGTTGCTGCTGCTCAGCGAGCTGAAAGCTGTGCGCGATACGATGGAGAGCTATAATTTTGATAAGAAATATTCGGAAGAAAAATAAAAT] [+] EMBL BM637724 [CCGAAATAAACAAATACCAAATTGTGTGCCCGGTGCGTGATAAAAAAGGAAGGTGATCGTTTTTGATACAGCCGAGGCCTTACACACTTCCCAACTTCCGGTGGGTGGTGCATTCGCTTATCAAAATGAAATTTCGCTTCTGCGGTGATGGCGACTGTCCCGATTGGGTGCTGGCCGAAATCCATTCCAATCTGGCCCAACTCACCACCAGCCAGCTGAACGATCTCGGCGAACATACGGCCAAATCGATTCTAGGAGAAGAAATACCGGAGGCTGAGATTAGCAAAATCTATTCCATCACTAAAGGTTCCATGGACGGGCCGAAGGGCGGTATCGCTTGTTTACGGTTTCTGCTTACCAGTGCCTCTCGGTACAACACGGAGAGTGCAGAATTCAGCACGGAACTGCAGCAGCTCGGATTGCCGAAGGAGCATACCGCCATCCTCTGTCGGCTGCTGGACGACTACGTGCAAAAGATACGGGCCGTACTGCGGGAGAAAAGTT ] [+] EMBL BM623231 [ ccgCAAATACCAAATTGTGTACCCGGTGCGTGATAAAAAAGGAAGGTGATCGTTTTTGATACAGCCGAGGCCTTACACTCTTCCCAACTTCCGGTGGGTGGTGCATTCGCTTATCAAAATGAAATTTCGCTTCTGCGGTGATGGCGACTGTCCCGATTGGGTGCTGGCCGAAATCCATTCCAATCTGGCCCAACTCACCACCGGTCAGCTGAACGATCTCGGAGAACATACGGCCAAATCGATTCTAGGCGAAGAAATACCGGAGGCTGAGATTAGCAAAATATATTCCATCACTAAAGGTTCCATGGACGGGCCGAAGGGCGGTATCGCATGTTTACGGTTTCTGCTCACCAGTGCCTCTCGGTACAACACGGAGAGTGCAGAATTCAGCACGGAACTGCAGCAGCTCGGATTGCCGAAGGAGCATACCGCCATCCTCTGTCGGCTGCTGGACGACTACGTGCAAAAGATACGGGCCGTACTGCGGGAGAAAAGTTTAAGCATCAATCAGCTGGACACCTTCAGTTGCAGCATTCCGAAGAATACGATCGACTGCATTCAGCTCAAGATCGGGATACAGAACGAGATAGTGGACGGGTTGCCGAGAAAAACGGCCCACACCGTGAATCTCAACCGCAACA ] [+] EMBL BX615142 [ CTTACACACTTCCCAACTTCCGGTGCGTGGTGCATTCGCTTATCAAAATGAAATTTCGCTTCTGCGGTGATGGCGACTGTCCCGATTGGGTGCTGGCCGAAATCCATTCCAATCTGGCCCAACTCACCACCAGCCAGCTGAACGATCTCGGCGAACATACGGCCAAATCGATTCTAGGAGAAGAAATACCGGAGGCTGAGATTAGCAAAATCTATTCCATCACTAAAGGTTCCATGGACGGGCCGAAGGGCGGTATCGCTTGTTTACGGTTTCTGCTTACCAGTGCCTCTCGGTACAACACGGAGAGTGCAGAATTCAGCACGGAACTGCAGCAGCTCGGATTGCCGAAGGAGCATACCGCCATCCTCTGTCGGCTGCTGGACGACTACGTGCAAAAGATACGGGCCGTACTGCGGGAGAAAAGTTTAAGCATCAATCAGCTGGACACCTTCAGCTGCAGCATTCCGAAGAATACGATCGACTGCATTCAGCTCAAGATCGGGATACAGAACGAGATAGTGGACGGGTTGCCGAGAAAAACGGCCCACACCGTGAATCTCAACCGTAACGATGCGTTGCTGCTGCTCAGCGAGCTGAAAGCTGTGCGCGATACGATGGAGAGCTATAATTTTGATAAGAAATATTCGGAAGAAAAATAAAAT] consensusID : consensus_5158#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 324 fasta sequence [CCCCCGAGGTTAATACAAATGTGTACCCGGTGCGCGATAAAAAAGGAAGGTGATCGTTTTTGATACAGCCGAGGCCTTACACTCTTCCCAACTTCCGGTGGGTGGTGCATTCGCTTATCAAAATGAAATTTCGCTTCTGCGGTGATGGCGACTGTCCCGATTGGGTGCTGGCCGAAATCCATTCCAATCTGGCCCAACTCACCACCAGCCAGCTGAACGATCTCGGCGAACATACGGCCAAATCGATTCTAGGAGAAGAAATACCGGAGGGTGAGATTAGCAAAATCTATTCCATCACTAAAGGTTCCATGGACGGGCCGAAGG] [+] EMBL AL694382 [CCCCCGAGGTTAATACAAATGTGTACCCGGTGCGCGATAAAAAAGGAAGGTGATCGTTTTTGATACAGCCGAGGCCTTACACTCTTCCCAACTTCCGGTGGGTGGTGCATTCGCTTATCAAAATGAAATTTCGCTTCTGCGGTGATGGCGACTGTCCCGATTGGGTGCTGGCCGAAATCCATTCCAATCTGGCCCAACTCACCACCAGCCAGCTGAACGATCTCGGCGAACATACGGCCAAATCGATTCTAGGAGAAGAAATACCGGAGGGTGAGATTAGCAAAATCTATTCCATCACTAAAGGTTCCATGGACGGGCCGAAGG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_5158#0 ---CCGAAATAAACAAATACCAAATTGTGTGCCCGGTGCGTGATAAAAAAGGAAGGTGAT 57 consensus_5158#1 CCCCCGAGGTTAATA-----CAAAT-GTGTACCCGGTGCGCGATAAAAAAGGAAGGTGAT 54 **** * ** * ***** **** ********* ******************* consensus_5158#0 CGTTTTTGATACAGCCGAGGCCTTACACACTTCCCAACTTCCGGTGGGTGGTGCATTCGC 117 consensus_5158#1 CGTTTTTGATACAGCCGAGGCCTTACACTCTTCCCAACTTCCGGTGGGTGGTGCATTCGC 114 **************************** ******************************* consensus_5158#0 TTATCAAAATGAAATTTCGCTTCTGCGGTGATGGCGACTGTCCCGATTGGGTGCTGGCCG 177 consensus_5158#1 TTATCAAAATGAAATTTCGCTTCTGCGGTGATGGCGACTGTCCCGATTGGGTGCTGGCCG 174 ************************************************************ consensus_5158#0 AAATCCATTCCAATCTGGCCCAACTCACCACCAGCCAGCTGAACGATCTCGGCGAACATA 237 consensus_5158#1 AAATCCATTCCAATCTGGCCCAACTCACCACCAGCCAGCTGAACGATCTCGGCGAACATA 234 ************************************************************ consensus_5158#0 CGGCCAAATCGATTCTAGGAGAAGAAATACCGGAGGCTGAGATTAGCAAAATCTATTCCA 297 consensus_5158#1 CGGCCAAATCGATTCTAGGAGAAGAAATACCGGAGGGTGAGATTAGCAAAATCTATTCCA 294 ************************************ *********************** consensus_5158#0 TCACTAAAGGTTCCATGGACGGGCCGAAGGGCGGTATCGCTTGTTTACGGTTTCTGCTTA 357 consensus_5158#1 TCACTAAAGGTTCCATGGACGGGCCGAAGG------------------------------ 324 ****************************** consensus_5158#0 CCAGTGCCTCTCGGTACAACACGGAGAGTGCAGAATTCAGCACGGAACTGCAGCAGCTCG 417 consensus_5158#1 ------------------------------------------------------------ consensus_5158#0 GATTGCCGAAGGAGCATACCGCCATCCTCTGTCGGCTGCTGGACGACTACGTGCAAAAGA 477 consensus_5158#1 ------------------------------------------------------------ consensus_5158#0 TACGGGCCGTACTGCGGGAGAAAAGTTTAAGCATCAATCAGCTGGACACCTTCAGTTGCA 537 consensus_5158#1 ------------------------------------------------------------ consensus_5158#0 GCATTCCGAAGAATACGATCGACTGCATTCAGCTCAAGATCGGGATACAGAACGAGATAG 597 consensus_5158#1 ------------------------------------------------------------ consensus_5158#0 TGGACGGGTTGCCGAGAAAAACGGCCCACACCGTGAATCTCAACCGCAACAATGCGTTGC 657 consensus_5158#1 ------------------------------------------------------------ consensus_5158#0 TGCTGCTCAGCGAGCTGAAAGCTGTGCGCGATACGATGGAGAGCTATAATTTTGATAAGA 717 consensus_5158#1 ------------------------------------------------------------ consensus_5158#0 AATATTCGGAAGAAAAATAAAAT 740 consensus_5158#1 ----------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||