These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5161#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 822 fasta sequence [CAGCAAGAGCAACAATTAGGATTTTACGTGAAATTTTTAGCCGTTTTGGAATGCCTAATGTTTTAGTAAGCGACAACGGGTCGCAGTTTGTAAGCACGGAGTTTGAGCTATTTTGTACGTTAAACGGCATTGAGCATTTGCGAACAGCCCCCTTCCATCCGCAATCCAACGGGCAAGCGGAAAGATTTGTGGATACATTTAAACGGGCACTTAAGAAAATGGAGGGGGAAGGTGGTACAGTGCAAGAAGCAATAGATATTTTCTTAATGACGTATCGAAGCATACCGCATAAGCTTTTGGAACGGAATCAATCGCCAGCAGAAGTGATGATAGGGCGTAAAATGCGTACATGCATGGA--GCTTTTGCGACCGTCTATGGATTATTGGCAC-AGACGTTAAACATAGGATGCGATT-AAGAAAATATGAATGTAATGATCTCGTTTACGC-AAAACAGTATATTAGAAACAAATGGAAATGGGTATCCGGAACAGTCAGG-AAGCGTTTAGGCTCGGTTATGTA-CGAGATTGTTACCACA-GAAAATAGACATTTACGATCCCATATTAATCAGTTGCGTTCTCGAGTGAGTGATAAACAATCAAGTCCGTTTAACGTTGATGAGTCACGTTCGTACCGTATGTTAGACGTGTTGTTGGATGCTTGGGGTATGAACTCGAATGAACCGGGAGCTAGCAGGCAGGGAAACGCTGAAATGAACNCGGATATAGCTAGGGCACAATATACGGAATCGCCATCGTTGGCTATATCGTCATCAACCCCATCATCCTCATCGTCTTCACCGCTACTGTCGTCCGTCCAGGCGGTT] [+] EMBL BX627881 [CAGCAAGAGCAACAATTAGGATTTTACGTGAAATTTTTAGCCGTTTTGGAATGCCTAATGTTTTAGTAAGCGACAACGGGTCGCAGTTTGTAAGCACGGAGTTTGAGCTATTTTGTACGTTAAACGGCATTGAGCATTTGCGAACAGCCCCCTTCCATCCGCAATCCAACGGGCAAGCGGAAAGATTTGTGGATACATTTAAACGGGCACTTAAGAAAATGGAGGGGGAAGGTGGTACAGTGCAAGAAGCAATAGATATTTTCTTAATGACGTATCGAAGCATACCGCATAAGCTTTTGGAACGGAATCAATCGCCAGCAGAAGTGATGATAGGGCGTAAAATGCGTACATGCATGGA GCTTTTGCGACCGTCTATGGATT TGGGCAC AGACGTTAAACATAGGATGCGATT AAGAAAATATGAATGTAATGATCTCGTTTACGC AAAACAGTATATTAGAAACAAATGGAAATGGGTATCCGGAACAGTCAGG AAGCGTTTAGGCTCGGTTATGTA CGAGATTGTTACCACA GAAAATAGACATTTACGATCCCATATTAATCAGTTGCGTTCTCGAGTGAGTGATAAACAATCAAGTCCGTTTAACGTTGATGAGTCACGTTCGTACCGTATGTTAGACGTGTTGTTGGATGCTTGGGGTATGAACTCGAATGAACCGGGAGCTAGCAGGCAGGGAAACGCTGAAATGAACNCGGATATAGCTAG ] [+] EMBL AL694462 [ cccccgAGGTTGT AAATGCGTACATGCATGGACGGCTTTTGCGACCGTCTATGGATTATTGGCACAAGACGTTAAACATAGGATGCGATTAAAGAAAATATGAATGTAATGATCTCGTTTACGCAAAAACAGTATATTAGAAACAAATGGAAATGGGTATCCGGAACAGTCAGGAAAGCGTTTAGGCTCGGTTATGTACCGAGATTGTTACCACAGGAAAATAGACATTTAC ] [+] EMBL AL930877 [ cgaGGTTTA TGGCAC AGACGTT AACATAGGATGCGATT AGAAAATATGAATGTAATGATCTCGTTTACGC AAAACAGTATATTAGAAACAAATGGAAATGGGTATCCGGAACAGTCAGG AAGCGTTTAGGCTCGGTTATGTA CGAGATTGTTACCACA GAAAATAGACATTTACGATCCCACATTAATCAGTTGCGTTCTCGAGTGAGTGATAAACAATCAAGTCCGTTTAACGTTGATGAGTCACGTTCGTACCGTATGTTAGACGTGTTGTTGGATGCTTGGGGTATGAACTCGAATGAACCGGGAGCTAGCAGGCAGGGAAACGCTGAAATGAACACGTATATAGCTAGGGCACAATATACGGAATCGCCATCGTTGGCTATATCGTCATCAACCCCATCATCCTCATCGTCTTCACCGCTACTGTCGTCCGTCCAGGCGGTT] consensusID : consensus_5161#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 821 fasta sequence [TATGCTGAGCAGAATACCGNGTTAAGATACGGATAAGCTTTTGGAACGGATAATCGTCAGAGAAGTGATGATAGGGGTAAAATGTGTACATGCATGGAGTTTTGCTGACTGTTATGGATTATGGACAGACGTNTAAACATAGGATGCGATATAAGAAAATATGAATGTAATGATACTACGTATATAGCAAAAGAGTATATTAGAAACAAATGGAACATGGGTATCNCGGAACAGTCAGGAAGCGTATAGGCTCGGTATATGTACGCAGATNTGTTACCAAANGGAAAAATTAGACANTGCAGCGGAAAGCGCAAACGAGTAAAAATACAGGAAGGCGATACAATCCGAAGCTGAAGATNGAATAAAACAAATACAAAGACTNCCGNTAACCGATAGGAACTGACGNTCCACCGGCATAACCGGAAACCACGGACACAGGCNNCACCGCCCCCCTNCGCANACGCCNCCGGCCNCNGCCCCCGCACCCNGCCNACGTTGCACCACCCNTCCCGCACACACCNGGNACACCCCCGGCAGCTNCCCGCTCCCATANCNCCCNCCCCCCGATCGAGCACCANANCTGGTGGCCAAAAACTACCNGGCCCATGTGACTCACTTGTGTAACCCAACACGTTGTAATTTACTTACGCCCTTAACAGTTGGGCCAACAACTCAACATNCACCGGGNGCTACACAACTTATNCTGCCCCACAACTACATACNCAGGTGGCCACNANACNCCTCCCAGCGCACNACATATCCACCCCCCCCCCCCAACCCCCNCCNNCCCCNNACCCNCACCCCCNCCNCCCCCTACCACN] [+] EMBL AL695676 [TATGCTGAGCAGAATACCGNGTTAAGATACGGATAAGCTTTTGGAACGGATAATCGTCAGAGAAGTGATGATAGGGGTAAAATGTGTACATGCATGGAGTTTTGCTGACTGTTATGGATTATGGACAGACGTNTAAACATAGGATGCGATATAAGAAAATATGAATGTAATGATACTACGTATATAGCAAAAGAGTATATTAGAAACAAATGGAACATGGGTATCNCGGAACAGTCAGGAAGCGTATAGGCTCGGTATATGTACGCAGATNTGTTACCAAANGGAAAAATTAGACANTGCAGCGGAAAGCGCAAACGAGTAAAAATACAGGAAGGCGATACAATCCGAAGCTGAAGATNGAATAAAACAAATACAAAGACTNCCGNTAACCGATAGGAACTGACGNTCCACCGGCATAACCGGAAACCACGGACACAGGCNNCACCGCCCCCCTNCGCANACGCCNCCGGCCNCNGCCCCCGCACCCNGCCNACGTTGCACCACCCNTCCCGCACACACCNGGNACACCCCCGGCAGCTNCCCGCTCCCATANCNCCCNCCCCCCGATCGAGCACCANANCTGGTGGCCAAAAACTACCNGGCCCATGTGACTCACTTGTGTAACCCAACACGTTGTAATTTACTTACGCCCTTAACAGTTGGGCCAACAACTCAACATNCACCGGGNGCTACACAACTTATNCTGCCCCACAACTACATACNCAGGTGGCCACNANACNCCTCCCAGCGCACNACATATCCACCCCCCCCCCCCAACCCCCNCCNNCCCCNNACCCNCACCCCCNCCNCCCCCTACCACN] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_5161#0 CAGCAAGAGCAACAATTAGGATTTTACGTGAAATTTTTAGCCG--TTTTGGAATGCCTAA 58 consensus_5161#1 -------TATGCTGAGCAGAATACCGNGTTAAGATACGGATAAGCTTTTGGAACGGATAA 53 * ** ** ** ** * ******** * *** consensus_5161#0 TGTTTTAGTAAGCGACAACGGGTCGCAGTTTGTAAGCACGGAGTTTGAGCTATTTTGTAC 118 consensus_5161#1 TCGTCAGAGAAGTGATGATAGGG-GTAAAATGTGTACATGCA--TGGAGTTTTGCTGACT 110 * * *** ** * ** * * *** ** * * * *** * * ** consensus_5161#0 GTTAAACGGCATTGA-GCATTTGCGAACAGCCCCCTTCCATCCGCAATCCAACGG-GCAA 176 consensus_5161#1 GTTATGGATTATGGACAGACGTNTAAACA------TAGGATGCGATATAAGAAAATATGA 164 **** ** ** * * **** * ** ** ** * * consensus_5161#0 GCGGAAAGAT-TTGTGGATACATTTAAACGGGCACTTAAGAA--AATGGAG---GGGGAA 230 consensus_5161#1 ATGTAATGATACTACGTATATAGCAAAAGAGTATATTAGAAACAAATGGAACATGGGTAT 224 * ** *** * * *** * *** * *** ** ****** *** * consensus_5161#0 GGTGGTACAGTGCAAGAAGCA-ATAG-------ATATTTTCTTAATGACGTATCGAAGCA 282 consensus_5161#1 CNCGGAACAGT-CAGGAAGCGTATAGGCTCGGTATATGTACGCAGATNTGTTACCAAANG 283 ** ***** ** ***** **** **** * * * ** * ** consensus_5161#0 TACCGCATAAGCTTTTGGAACGGAATCAATCGCCAGCAGAAGTGATGATAGGGCGTAAAA 342 consensus_5161#1 GAAAAATTAGACANTGCAGCGGAAAGCGCAAACGAGTAAAAATACAGGAAGGCGATACAA 343 * ** * * * ** * * ** * ** * * *** ** ** consensus_5161#0 TGCGTACATGCATGGAGCTTTTGCGACCGTCTATGGATTATTGGCACAGACGTTAAACAT 402 consensus_5161#1 TCCGAAGCTGAAGATNGAATAAAACAA-ATACAAAGACTNCCGNTA-ACCGATAGGAACT 401 * ** * ** * * * * * * ** * * * * * * * consensus_5161#0 AGGATGCGATTAAGAAAATATGAATGTAATGATCTCGTTTACGCAAAACAGTATATTAGA 462 consensus_5161#1 GACGNTCCACCGGCATAACCGGAAACCACGGACACAGGCNNCACCGCCCCCCTNCGCANA 461 * * * ** *** * ** * * * * * * consensus_5161#0 AACAAATGGAAATGGGTATCCGGAACAGTCAG-GAAGCGTTTAGGCTCGGTTATGTACGA 521 consensus_5161#1 CGCCNCCGGCCNCNGCCCCCGCACCCNGCCNACGTTGCACCACCCNTCCCGCACACACCN 521 * ** * * * * * * ** ** * ** consensus_5161#0 GATTGTTACCACAGAAAATAGACATTTACG-ATCCCATATTAATCAGTTGCGTTCTCGAG 580 consensus_5161#1 GGN-ACACCCCCGGCAGCTNCCCGCTCCCATANCNCCCNCCCCCCGATCGAGCACCANAN 580 * ** * * * * * * * * * * * * * * * * consensus_5161#0 TGAGTGAT---AAACAATCAAGTCCGTTTAACGTTGATGAGTCACGTT-CGTACCGTATG 636 consensus_5161#1 CTGGTGGCCAAAAACTACCNGGCCCATGTGACTCACTTGTGTAACCCAACACGTTGTAAT 640 *** **** * * * ** * * ** ** ** ** * *** consensus_5161#0 TTAGACGTGTTGTTGGATGCTTGGGGTATGAACTCGA-ATGAACCGGGAGCTA-GCAGGC 694 consensus_5161#1 TTACTTACGCCCTTA-ACAGTTGGGCCAACAACTCAACATNCACCGGGNGCTACACAACT 699 *** * ** * ***** * ***** * ** ****** **** ** consensus_5161#0 AGGGAAACGCTGAAATGA-ACNCGGATATAGCTAGGGCACAATATACGGAATCGCCATCG 753 consensus_5161#1 TATNCTGCCCCACAACTACATACNCAGGTGGCCACNANACNCCTCCCAGCG-CACNACAT 758 * * ** * * * * * ** * ** * * * * * consensus_5161#0 TTGGCTATATCGTCATCAACCCCATCATCCTCATCGTCTTCACCGCTACTGTCGTCCGTC 813 consensus_5161#1 ATCCACCCCCCCCCCCCAACCCCCNCCNNCCCCNNACCCNCACCCCCNCCNCCCCCTACC 818 * * * ******* * * * * **** * * * * * consensus_5161#0 CAGGCGGTT 822 consensus_5161#1 ACN------ 821 |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||