cluster # 5169

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Anopheles gambiae
cluster # 5169 cluster # 5169 Sequences # 4 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_5169#0 length = 687 sequences # 1

consensus_5169#1 length = 685 sequences # 3

consensusID : consensus_5169#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 687
fasta sequence

                              [CCGCCCACGCGTCCGATGGAAACGTTGATCTGCCAGAATGAAAGCGAAAATGGCAACCTGCAAGAGCTGCAGGAGAAAATCGCCCAGCTGGAGGCCGAAAAGGAGCAGAAGGCTGCGTCGCGTTCGCGATACGAAAAGGAACTGGAAGCGATTGAAGATCAATGGCGCTCCGAGGCGAAGGAGCTGTTTCAGGTGATCGATAAGCTGCAGGAAGAAAACCGTAAACTGCAGCGAGGAATTGCCCAGTCGGCAAGTGAAAGCACCAATCAGAGCGAAGAACGCTCTCGGAACGGTGGCACGAACGATGGCTTTCCCAACGATTCCGATGCGCTAGAGCCGGAGGCGGACAGTGTGTTAAAAAAATCGGAACACAAAATTAAGCTCTCCCAGCTGGAGGAGAAGCTGAAGCGCAAAGAGATGGAACTGTGCGAGAAGATGGCCGAAATCGAAAGCTTGTCCAGCCAAAATGATCGCCTGAAGAAGGTGGTAAGTGAAAGCCGCAGGCGGCAGAAGCTTTCGCACAATCAGATCATTACGCTGTGCGAGGAACGGGCCGACTTTCTGGCCCAGATACAAGACCAGCATCACGAGATCAAGGCACTGCGGATGCAGCTCGGACTGGCCGAAAAGGAAAACGAAGACTTGGCGAACCGGGTTAACGAGGACGAACGGCCGCGGTTCTCGACG]

[+] EMBL BM643362             [CCGCCCACGCGTCCGATGGAAACGTTGATCTGCCAGAATGAAAGCGAAAATGGCAACCTGCAAGAGCTGCAGGAGAAAATCGCCCAGCTGGAGGCCGAAAAGGAGCAGAAGGCTGCGTCGCGTTCGCGATACGAAAAGGAACTGGAAGCGATTGAAGATCAATGGCGCTCCGAGGCGAAGGAGCTGTTTCAGGTGATCGATAAGCTGCAGGAAGAAAACCGTAAACTGCAGCGAGGAATTGCCCAGTCGGCAAGTGAAAGCACCAATCAGAGCGAAGAACGCTCTCGGAACGGTGGCACGAACGATGGCTTTCCCAACGATTCCGATGCGCTAGAGCCGGAGGCGGACAGTGTGTTAAAAAAATCGGAACACAAAATTAAGCTCTCCCAGCTGGAGGAGAAGCTGAAGCGCAAAGAGATGGAACTGTGCGAGAAGATGGCCGAAATCGAAAGCTTGTCCAGCCAAAATGATCGCCTGAAGAAGGTGGTAAGTGAAAGCCGCAGGCGGCAGAAGCTTTCGCACAATCAGATCATTACGCTGTGCGAGGAACGGGCCGACTTTCTGGCCCAGATACAAGACCAGCATCACGAGATCAAGGCACTGCGGATGCAGCTCGGACTGGCCGAAAAGGAAAACGAAGACTTGGCGAACCGGGTTAACGAGGACGAACGGCCGCGGTTCTCGACG]




>consensus_5169#0
CCGCCCACGCGTCCGATGGAAACGTTGATCTGCCAGAATGAAAGCGAAAATGGCAACCTG
CAAGAGCTGCAGGAGAAAATCGCCCAGCTGGAGGCCGAAAAGGAGCAGAAGGCTGCGTCG
CGTTCGCGATACGAAAAGGAACTGGAAGCGATTGAAGATCAATGGCGCTCCGAGGCGAAG
GAGCTGTTTCAGGTGATCGATAAGCTGCAGGAAGAAAACCGTAAACTGCAGCGAGGAATT
GCCCAGTCGGCAAGTGAAAGCACCAATCAGAGCGAAGAACGCTCTCGGAACGGTGGCACG
AACGATGGCTTTCCCAACGATTCCGATGCGCTAGAGCCGGAGGCGGACAGTGTGTTAAAA
AAATCGGAACACAAAATTAAGCTCTCCCAGCTGGAGGAGAAGCTGAAGCGCAAAGAGATG
GAACTGTGCGAGAAGATGGCCGAAATCGAAAGCTTGTCCAGCCAAAATGATCGCCTGAAG
AAGGTGGTAAGTGAAAGCCGCAGGCGGCAGAAGCTTTCGCACAATCAGATCATTACGCTG
TGCGAGGAACGGGCCGACTTTCTGGCCCAGATACAAGACCAGCATCACGAGATCAAGGCA
CTGCGGATGCAGCTCGGACTGGCCGAAAAGGAAAACGAAGACTTGGCGAACCGGGTTAAC
GAGGACGAACGGCCGCGGTTCTCGACG

consensusID : consensus_5169#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 685
fasta sequence

                              [CAGATCCCCCGAGGTTGTGCATTACACATATTGATACGCATCGGTCGTATTCTGTGGCGAAAACGAAGCCTCTATCAAACATTTTTGGCAGCCCGCGATCGTCAAACAGCAAAATGAATGTGGCGGAAAAGTTTAAGCCGGTAGTGGACGTGTACGATTTAGCGTTGGAAATTGGGAAAGAGTTTGAAACAATCATCGATGCAAATGGAGTAAACGCAGTGTCTGGGCTGATTACGAAAGTGGTCAACGCGCTGGAGCTGATGGAAACGTTGATCTGC-CAGAATGAAAGCGAAAATGGCAACCTGCAAGAGCTGCAGGAGAAAATCGCCCAGCTGG-AGGCCGAAAAGGAGCAGAAGGC-TGCGTCGC-GTTCGCGATACGAAAAGGAACTGGAAGCGATTGAAGATCAATGGCGCTCCGAGGCGAAGGAGCTGTTTCAGGTGATCGATAAGCTGCAGGAAGAAAACCGTAAACTGCAGCGAGGAATTGCCCAGTCGGCAAGTGAAAGCACCAATCAGAGCGAAGAACGCTCTCGGAACGGTGGCACGAACGATGGCTTTCCCAACGATTCCGATGCGCTAGAGCCGGAGGCGGACAGTGTGTTAAAAAAATCGGAACACAAAATTAAGCTCTCCCAGCTGGAGGAGAAGCTGAAGCGCAAAGAGATGGAACTGTGCGAGAAGATGGC]

[+] EMBL AL694664             [CAGATCCCCCGAGGTTGTGCATTACACATATTGATACGCATCGGTCGTATTCTGTGGCGAAAACGAAGCCTCTATCAAACATTTTTGGCAGCCCGCGATCGTCAAACAGCAAAATGAATGTGGCGGAAAAGTTTAAGCCGGTAGTGGACGTGTACGATTTAGCGTTGGAAATTGGGAAAGAGTTTGAAACAATCATCGATGCAAATGGAGTAAATGCAGTGTCTGGGCTGATTACGAAAGTGGTCAACGCGCTGGAACTGATGGAAACGTTGATCTGCGCAGAATGAAAGCGAAAATGGNAACCTGCAAGAGCTGCAGGAGAAAATCGCACAGCTGGAAGCCCGAAAAGGAGCAGAAGGCGTGCGTCGCGGTTCGCGATACGAAAAGGAACTGGAA                                                                                                                                                                                                                                                                                                     ]
[+] EMBL BM616882             [                     ccgCACATATTGATACGCATCGGTCGTATTCTTTGGCGAAAACGAAGCCGTTATCAAACATTTTTGGCAGTCCGCGATCGTCAAACAGCAAAATGAATGTGGCGGAAAAGTTT AGC  GTAGTGGACGTGTACGATTTAGCGTTGGAAATTGGGAAAGAGTTTGAAACAATCATCGATGCAAATGGAGTAAACGCAGTGTCTGGGCTGATTACGAAAGTGGTCAACGCGCTGGAGCTGATGGAAACGTTGATCTGC CAGAATGAAAGCGAAAATGGCAACCTGCAAGAGCTGCAGGAGAAAATCGCCCAGCTGG AGGCCGAAAAGGAGCAGAAGGC TGCGTCGC GTTCGCGATACGAAAAGGAACTGGAAGCGATTGAAGATCAATGGCGCTCCGAGGCGAAGGAGCTGTTTCAGGTGATCGATAAGCTGCAGGAAGAAAACCGTAAACTGCAGCGAGGAATTGCCCAGTCGGCAAGTGAAAGCACCAATCAGAGCGAAGAACGCTCTCGGAACGGTGGCACGAACGATGGCTTTCCCAACGATTCCGATGCGCTAGAGCCGGAGGCGGACAGTGTGTTAAAAAAATCGGAACACAAAATTAAGCTCTCCCAGCTGGAGG                                           ]
[+] EMBL BM614139             [                                                                                                                                                                           ccGGGAAAGAGTTTGAAACAATCATCGATGCAAATGGAGTAAACGCAGTGTCTGGGCTGATTACGAAAGTGGTCAACGCGCTGGAGCTGATGGAAACGTTGATCTGC CAGAATGAAAGCGAAAATGGCAACCTGCAAGAGCTGCAGGAGAAAATCGCCCAGCTGG AGGCCGAAAAGGAGCAGAAGGC TGCGTCGC GTTCGCGATACGAAAAGGAACTGGAAGCGATTGAAGATCAATGGCGCTCCGAGGCGAAGGAGCTGTTTCAGGTGATCGATAAGCTGCAGGAAGAAAACCGTAAACTGCAGCGAGGAATTGCCCAGTCGGCAAGTGAAAGCACCAATCAGAGCGAAGAACGCTCTCGGAACGGTGGCACGAACGATGGCTTTCCCAACGATTCCGATGCGCTAGAGCCGGAGGCGGACAGTGTGTTAAAAAAATCGGAACACAAAATTAAGCTCTCCCAGCTGGAGGAGAAGCTGAAGCGCAAAGAGATGGAACTGTGCGAGAAGATGGC]




>consensus_5169#1
CAGATCCCCCGAGGTTGTGCATTACACATATTGATACGCATCGGTCGTATTCTGTGGCGA
AAACGAAGCCTCTATCAAACATTTTTGGCAGCCCGCGATCGTCAAACAGCAAAATGAATG
TGGCGGAAAAGTTTAAGCCGGTAGTGGACGTGTACGATTTAGCGTTGGAAATTGGGAAAG
AGTTTGAAACAATCATCGATGCAAATGGAGTAAACGCAGTGTCTGGGCTGATTACGAAAG
TGGTCAACGCGCTGGAGCTGATGGAAACGTTGATCTGCCAGAATGAAAGCGAAAATGGCA
ACCTGCAAGAGCTGCAGGAGAAAATCGCCCAGCTGGAGGCCGAAAAGGAGCAGAAGGCTG
CGTCGCGTTCGCGATACGAAAAGGAACTGGAAGCGATTGAAGATCAATGGCGCTCCGAGG
CGAAGGAGCTGTTTCAGGTGATCGATAAGCTGCAGGAAGAAAACCGTAAACTGCAGCGAG
GAATTGCCCAGTCGGCAAGTGAAAGCACCAATCAGAGCGAAGAACGCTCTCGGAACGGTG
GCACGAACGATGGCTTTCCCAACGATTCCGATGCGCTAGAGCCGGAGGCGGACAGTGTGT
TAAAAAAATCGGAACACAAAATTAAGCTCTCCCAGCTGGAGGAGAAGCTGAAGCGCAAAG
AGATGGAACTGTGCGAGAAGATGGC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_5169#0      ------------------------------------------------------------
consensus_5169#1      CAGATCCCCCGAGGTTGTGCATTACACATATTGATACGCATCGGTCGTATTCTGTGGCGA 60
                                                                                  

consensus_5169#0      ------------------------------------------------------------
consensus_5169#1      AAACGAAGCCTCTATCAAACATTTTTGGCAGCCCGCGATCGTCAAACAGCAAAATGAATG 120
                                                                                  

consensus_5169#0      ------------------------------------------------------------
consensus_5169#1      TGGCGGAAAAGTTTAAGCCGGTAGTGGACGTGTACGATTTAGCGTTGGAAATTGGGAAAG 180
                                                                                  

consensus_5169#0      ------------------------------------------------------------
consensus_5169#1      AGTTTGAAACAATCATCGATGCAAATGGAGTAAACGCAGTGTCTGGGCTGATTACGAAAG 240
                                                                                  

consensus_5169#0      CCGCCCACGCGT-----CCGATGGAAACGTTGATCTGCCAGAATGAAAGCGAAAATGGCA 55
consensus_5169#1      TGGTCAACGCGCTGGAGCTGATGGAAACGTTGATCTGCCAGAATGAAAGCGAAAATGGCA 300
                        * * *****      * *****************************************

consensus_5169#0      ACCTGCAAGAGCTGCAGGAGAAAATCGCCCAGCTGGAGGCCGAAAAGGAGCAGAAGGCTG 115
consensus_5169#1      ACCTGCAAGAGCTGCAGGAGAAAATCGCCCAGCTGGAGGCCGAAAAGGAGCAGAAGGCTG 360
                      ************************************************************

consensus_5169#0      CGTCGCGTTCGCGATACGAAAAGGAACTGGAAGCGATTGAAGATCAATGGCGCTCCGAGG 175
consensus_5169#1      CGTCGCGTTCGCGATACGAAAAGGAACTGGAAGCGATTGAAGATCAATGGCGCTCCGAGG 420
                      ************************************************************

consensus_5169#0      CGAAGGAGCTGTTTCAGGTGATCGATAAGCTGCAGGAAGAAAACCGTAAACTGCAGCGAG 235
consensus_5169#1      CGAAGGAGCTGTTTCAGGTGATCGATAAGCTGCAGGAAGAAAACCGTAAACTGCAGCGAG 480
                      ************************************************************

consensus_5169#0      GAATTGCCCAGTCGGCAAGTGAAAGCACCAATCAGAGCGAAGAACGCTCTCGGAACGGTG 295
consensus_5169#1      GAATTGCCCAGTCGGCAAGTGAAAGCACCAATCAGAGCGAAGAACGCTCTCGGAACGGTG 540
                      ************************************************************

consensus_5169#0      GCACGAACGATGGCTTTCCCAACGATTCCGATGCGCTAGAGCCGGAGGCGGACAGTGTGT 355
consensus_5169#1      GCACGAACGATGGCTTTCCCAACGATTCCGATGCGCTAGAGCCGGAGGCGGACAGTGTGT 600
                      ************************************************************

consensus_5169#0      TAAAAAAATCGGAACACAAAATTAAGCTCTCCCAGCTGGAGGAGAAGCTGAAGCGCAAAG 415
consensus_5169#1      TAAAAAAATCGGAACACAAAATTAAGCTCTCCCAGCTGGAGGAGAAGCTGAAGCGCAAAG 660
                      ************************************************************

consensus_5169#0      AGATGGAACTGTGCGAGAAGATGGCCGAAATCGAAAGCTTGTCCAGCCAAAATGATCGCC 475
consensus_5169#1      AGATGGAACTGTGCGAGAAGATGGC----------------------------------- 685
                      *************************                                   

consensus_5169#0      TGAAGAAGGTGGTAAGTGAAAGCCGCAGGCGGCAGAAGCTTTCGCACAATCAGATCATTA 535
consensus_5169#1      ------------------------------------------------------------
                                                                                  

consensus_5169#0      CGCTGTGCGAGGAACGGGCCGACTTTCTGGCCCAGATACAAGACCAGCATCACGAGATCA 595
consensus_5169#1      ------------------------------------------------------------
                                                                                  

consensus_5169#0      AGGCACTGCGGATGCAGCTCGGACTGGCCGAAAAGGAAAACGAAGACTTGGCGAACCGGG 655
consensus_5169#1      ------------------------------------------------------------
                                                                                  

consensus_5169#0      TTAACGAGGACGAACGGCCGCGGTTCTCGACG 687
consensus_5169#1      --------------------------------