These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5174#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1688 fasta sequence [GACAGAGCCGCGTGGAAGCACTGGTACGTAAGTTCCTACCCTAGTTCCCATCCCCGACTGACGGTCCACGGAAAGGCAGGNCCTGCAGGATGGTGCAGTAGAGTACACTGCTGTGGTTTCAGTTAGAGCTGTTGTTGCTGTCGCTTAGACGCTACATTAGTTGCTTTAGAAAAGTTGGTTTGTTTGTAGGGTTTTCTGTTTTGTACAAAAAAAAAACACACACGCGCACGTTTAGCCTATGTACAGGAACAGCCAGGCCCCGGCTTGTAACTGGCTGGCGGATGATCGCGTACCAGCAAACTCAGTGCAATAGTAGTGTCCATGAGCGATTGTGTAGCCACAGTATCTTATAACATGTGTTTCTCCCTCTCTCTCTCCCTCTCTCTAGATTAGTCATTTAGTTAGTGTGGCTAGTACCCCTCGAGTATGGCTAGAAAGGCAAGGATGATGCTAGGATGATTTAGTGCTTCGCTCAGTATAGTTTTGTATGTTTGACTAAAAAAGCGTATCAGAGTTACAAATAGGGGGGGGGAGTTCAGCTATGCAAGTAAGCTATATTATCAACGCTACTGCTGCGCGCNCCACTTTGGTAGTTTAACGCAAAGGAGGGACTGGGGGGACCTGTTTTGTAGGATAGACCGGTCTTAAATAGACCGCCCGGGCCCGTCCCTGCGCCGTCACGTGCGTGCCTATTTCCCTTCGCAACACGCCCATCATTTGATCCTGGGTTTTAGTTTCTTGTTACATTGTTTGATTTTTTGTAAGCGTAGTTAATGTATAATCTCCATTTTGCACTAATATCGCTCCAACGTTTGTTCTATAGTCGTTTCGAACGAAATCGAAAGCTAGATCAAATTTGCCTAAAACTGAACTGAACGAACCTTTTCTAAGAATGCAGTACGAAAAACAATGATCGTCTTTTGCAGATTACAGGCCATTAAAAACAAAACAGTAAAGCGCTGTTTCTAAACGGTAAAATTGTAAAAGTAAAAAGTTCACCGAAGTAAAGGTAGCAGAATTAAAACCGAAACCTACAGACTGCTAGTATCAGTATCCCTATGACAAGAGTTTTCCAACATCTTCGTTCCTTTATCTCTCTCTCTCTCTCTTTGTCTCTCTGTGTCCCTCTAAAACAGTGTTCAGTGGGATATAAAATAGTTTAAACTAACACCATTAAAACTTGACTCAACATAGTCGCATTACTACGGTCGGGAGTCGCACTTTCACGCGGAACCAAAAAAAACAACACCGAGTTTTTTCCTTTTCTGGTTACATTACGCATTAACGCAAAATGTTCGAAGAGAAAATGTTACCACCACTATGAAAAATCCGGACACTCCCGTGTGTGTGTGTGTGTGTTAAAACTAAATACAACGCAAATAAGTTCACATCCCGTTCACGGCGGCTTCAGCGTGCTTCACGGTTGGCGCTGCATACAGCTCACTCTCCCACACACACACACTCAACTCGCAGCTGTCGCAGCCTACTTCAGATCCATCTCTTCGCTGCTTTCTTCTGCACTTTCGTTATTACTGTCCGATTGTTCCGTCTGTTTGTTCTTTGTGTCGCGCGCTTTTTCGGGTGCGGAGGATGACGACGACGGCTTCACCGGCGCCGGTAGTTCGCCACCATTGCTGGGTGCGTCGTCCCGCGCCGCCCCACCCACGCGTCCGCCCACGCGTCCGCGG] [-] EMBL BX628920 [GACAGAGCCGCGTGGAAGCACTGGTACGTAAGTTCCTACCCTAGTTCCCATCCCCGACTGACGGTCCACGGAAAGGCAGGNCCTGCAGGATGGTGCAGTAGAGTACACTGCTGTGGTTTCAGTTAGAGCTGTTGTTGCTGTCGCTTAGACGCTACATTAGTTGCTTTAGAAAAGTTGGTTTGTTTGTAGGGTTTTCTGTTTTGTACAAAAAAAAAACACACACGCGCACGTTTAGCCTATGTACAGGAACAGCCAGGCCCCGGCTTGTAACTGGCTGGCGGATGATCGCGTACCAGCAAACTCAGTGCAATAGTAGTGTCCATGAGCGATTGTGTAGCCACAGTATCTTATAACATGTGTTTCTCCCTCTCTCTCTCCCTCTCTCTAGATTAGTCATTTAGTTAGTGTGGCTAGTACCCCTCGAGTATGGCTAGAAAGGCAAGGATGATGCTAGGATGATTTAGTGCTTCGCTCAGTATAGTTTTGTATGTTTGACTAAAAAAGCGTATCAGAGTTACAAATAGGGGGGGGGAGTTCAGCTATGCAAGTAAGCTATATTATCAACGCTACTGCTGCGCGCNCCACTTTGGTAGTTTAACGCAAAGGAGGGACTGGGGGGACCTGTTTTGTAGGATAGACCGGTCTTAAATAGACCGCCCGGGCCCGTCCCTGCGCCGTCACGTGCGTGCCTATTTCCCTTCGCAACACGCCCATCATTTGATCCT ] [+] EMBL CNS08MBN [ ATCAACGCTACTGCTGCGCGCACCACTTTGGTAGTTTAACGCAAAGGAGGGACTGGGGGGACCTGTTTTGTAGGATAGACCGGTCTTAAATAGACCGCCCGGGCCCGTCCCTGCGCCGTCACGTGCGTGCCTATTTCCCTTCGCAACACGCCCATCATTTGATCCTGGGTTTTAGTTTCTTGTTACATTGTTTGATTTTTTGTAAGCGTAGTTAATGTATAATCTCCATTTTGCACTAATATCGCTCCAACGTTTGTTCTATAGTCGTTTCGAACGAAATCGAAAGCTAGATCAAATTTGCCTAAAACTGAACTGAACGAACCTTTTCTAAGAATGCAGTACGAAAAACAATGATCGTCTTTTGCAGATTACAGGCCATTAAAAACAAAACAGTAAAGCGCTGTTTCTAAACGGTAAAATTGTAAAAGTAAAAAGTTCACCGAAGTAAAGGTAGCAGAATTAAAACCGAAACCTACAGACTGCTAGTATCAGTATCCCTATGACAAGAGTTTTCCAACATCTTCGTTCCTTTATCTCTCTCTCTCTCTCTTTGTCTCTCTGTGTCCCTCTAAAACAGTGTTCAGTGGGATATAAAATAGTTTAAACTAACACCATTAAAACTTGACTCAACATAGTCGCATTACTACGGTCGGGAGTCGCACTTTCACGCGGAACCAAAAAAAACAACACCGAGTTTTTTCCTTTTCTGGTTACATTACGCATTAACGCAAAATGTTCGAAGAGAAAATGTTACCACCACTATGAAAAATCCGGACACTCCCGTGTGTGTGTGTGTGTGTTAAAACTAAATACAACGCAAATAAGTTCACATCCCGTTCACGGCGGCTTCAGCGTGCTTCACGGTTGGCGCTGCATACAGCTCACTCTCCCACACACACACACTCAACTCGCAGCTGTCGCAGCCTACTTCAGATCCATCTCTTCGCTGCTTTCT ] [-] EMBL BM624721 [ AATTAAACCCGAACCTTACAGACTGCTAGTATCAGTATCCCTATGACAAGAGTTTTCCAACATCTTCGTTCCTTTATCTCTCTCTCTCTCTCTTAGTCTCTCTGTGTCCCTCTAAAACAGTGTTCAGTGGGATATAAAATAGTTTAAACTAACACCATTAAAACTAGACTCAACATAGTCGCATTACTACGGTCGGGAGTCGCACTTTCACGCGGAACCAAAAAAAACAACACCGAGTTTTTTCCTTTTCTGGTTACATTACGCATTAACGCAAAATGTTCGAAGAGAAAATGTTAAAACCACTATGAAAAATCCGGACACTCCCGTGTGTGTGTGTGTGTGTTAAAACTAAATACAACGCAAATAAGTTCACATCCCGTTCACGGCGGCTTCAGCGTGCTTCACGGTTGGCGCTGCATACAGCTCACTCTCCCACACACACACACTCAACTCGCAGCTGTCGCAGCCTACTTCAGATCCATCTCTTCGCTGCTTTCTTCTGCACTTTCGTTATTACTGTCCGATTGTTCCGTCTGTTTGTTCTTTGTGTCGCGCGCTTTTTCGGGTGCGGAGGATGACGACGACGGCTTCACCGGCGCCGGTAGTTCGCCACCATTGCTGGGTGCGTCGTCCCGCGCCGCCCCACCCACGCGTCCGCCCACGCGTCCGCGG] consensusID : consensus_5174#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 564 fasta sequence [TCGTCCCTGCNCTGCGCNCCGCTGCTCTCTAGATTTAGTCANGTAGTTAGTGTGGCTAGTACCCCNTCGAGTATGGCTAGGANAGAGGCAAGGATGATGCTAGGATGAGTGTTAGTGCTTCGGGTCAGTATAGTGTTTGTATGTTTGAGCTNGGNNNAAGCGTATCAGAGTTACAAATAGGGGGGGGGAGTTCAGCTATGCAAGTAAGCTATATTATCAACGCTACTGCTGCGCGCACCACTTTGGTAGTTTAACGCAAAGGAGGGACTGGGGGGACCTGTTTTGTAGGATAGACCGGTCTTAAATAGACCGCCCGGGCCCGTCCCTGCGCCGTCACGTGCGTGCCTATTTCCCTTCGCAACACGCCCATCATTTGATCCTGGGTTTTAGTTTCTTGTTACATTGTTTGATTTTTTGTAAGCGTAGTTAATGTATAATCTCCATTTTGCACTAATATCGCTCCAACGTTTGTTCTATAGTCGTTTCGAACGAAATCGAAAGCTAGATCAAATTTGCCTAAAACTGAACTGAACGACCTTTTCTAAGATACCTCGGGGGATTCTT] [-] EMBL AL694796 [TCGTCCCTGCNCTGCGCNCCGCTGCTCTCTAGATTTAGTCANGTAGTTAGTGTGGCTAGTACCCCNTCGAGTATGGCTAGGANAGAGGCAAGGATGATGCTAGGATGAGTGTTAGTGCTTCGGGTCAGTATAGTGTTTGTATGTTTGAGCTNGGNNNAAGCGTATCAGAGTTACAAATAGGGGGGGGGAGTTCAGCTATGCAAGTAAGCTATATTATCAACGCTACTGCTGCGCGCACCACTTTGGTAGTTTAACGCAAAGGAGGGACTGGGGGGACCTGTTTTGTAGGATAGACCGGTCTTAAATAGACCGCCCGGGCCCGTCCCTGCGCCGTCACGTGCGTGCCTATTTCCCTTCGCAACACGCCCATCATTTGATCCTGGGTTTTAGTTTCTTGTTACATTGTTTGATTTTTTGTAAGCGTAGTTAATGTATAATCTCCATTTTGCACTAATATCGCTCCAACGTTTGTTCTATAGTCGTTTCGAACGAAATCGAAAGCTAGATCAAATTTGCCTAAAACTGAACTGAACGACCTTTTCTAAGATACCTCGGGGGATTCTT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_5174#0 GACAGAGCCGCGTGGAAGCACTGGTACGTAAGTTCCTACCCTAGTTCCCATCCCCGACTG 60 consensus_5174#1 ------------------------------------------------------------ consensus_5174#0 ACGGTCCACGGAAAGGCAGGNCCTGCAGGATGGTGCAGTAGAGTACACTGCTGTGGTTTC 120 consensus_5174#1 ------------------------------------------------------------ consensus_5174#0 AGTTAGAGCTGTTGTTGCTGTCGCTTAGACGCTACATTAGTTGCTTTAGAAAAGTTGGTT 180 consensus_5174#1 ------------------------------------------------------------ consensus_5174#0 TGTTTGTAGGGTTTTCTGTTTTGTACAAAAAAAAAACACACACGCGCACGTTTAGCCTAT 240 consensus_5174#1 ------------------------------------------------------------ consensus_5174#0 GTACAGGAACAGCCAGGCCCCGGCTTGTAACTGGCTGGCGGATGATCGCGTACCAGCAAA 300 consensus_5174#1 ------------------------------------------------------------ consensus_5174#0 CTCAGTGCAATAGTAGTGTCCATGAGCGATTGTGTAGCCACAGTATCTTATAACATGTGT 360 consensus_5174#1 --------------------------------------------------------TCGT 4 ** consensus_5174#0 TTCTCCCTCTCTCTCTCCCTCTCTCTAGATT-AGTCATTTAGTTAGTGTGGCTAGTACCC 419 consensus_5174#1 CCCTGCNCTGCGCNCCGCTGCTCTCTAGATTTAGTCANGTAGTTAGTGTGGCTAGTACCC 64 ** * * * * * *********** ***** ********************* consensus_5174#0 CT-CGAGTATGGCTAGAAA---GGCAAGGATGATGCTAGGATGATT--TAGTGCTTCGC- 472 consensus_5174#1 CNTCGAGTATGGCTAGGANAGAGGCAAGGATGATGCTAGGATGAGTGTTAGTGCTTCGGG 124 * ************* * ********************** * ********** consensus_5174#0 TCAGTATAGT-TTTGTATGTTTGA---CTAAAAAAGCGTATCAGAGTTACAAATAGGGGG 528 consensus_5174#1 TCAGTATAGTGTTTGTATGTTTGAGCTNGGNNNAAGCGTATCAGAGTTACAAATAGGGGG 184 ********** ************* *************************** consensus_5174#0 GGGGAGTTCAGCTATGCAAGTAAGCTATATTATCAACGCTACTGCTGCGCGCNCCACTTT 588 consensus_5174#1 GGGGAGTTCAGCTATGCAAGTAAGCTATATTATCAACGCTACTGCTGCGCGCACCACTTT 244 **************************************************** ******* consensus_5174#0 GGTAGTTTAACGCAAAGGAGGGACTGGGGGGACCTGTTTTGTAGGATAGACCGGTCTTAA 648 consensus_5174#1 GGTAGTTTAACGCAAAGGAGGGACTGGGGGGACCTGTTTTGTAGGATAGACCGGTCTTAA 304 ************************************************************ consensus_5174#0 ATAGACCGCCCGGGCCCGTCCCTGCGCCGTCACGTGCGTGCCTATTTCCCTTCGCAACAC 708 consensus_5174#1 ATAGACCGCCCGGGCCCGTCCCTGCGCCGTCACGTGCGTGCCTATTTCCCTTCGCAACAC 364 ************************************************************ consensus_5174#0 GCCCATCATTTGATCCTGGGTTTTAGTTTCTTGTTACATTGTTTGATTTTTTGTAAGCGT 768 consensus_5174#1 GCCCATCATTTGATCCTGGGTTTTAGTTTCTTGTTACATTGTTTGATTTTTTGTAAGCGT 424 ************************************************************ consensus_5174#0 AGTTAATGTATAATCTCCATTTTGCACTAATATCGCTCCAACGTTTGTTCTATAGTCGTT 828 consensus_5174#1 AGTTAATGTATAATCTCCATTTTGCACTAATATCGCTCCAACGTTTGTTCTATAGTCGTT 484 ************************************************************ consensus_5174#0 TCGAACGAAATCGAAAGCTAGATCAAATTTGCCTAAAACTGAACTGAACGAACCTTTTCT 888 consensus_5174#1 TCGAACGAAATCGAAAGCTAGATCAAATTTGCCTAAAACTGAACTGAACGA-CCTTTTCT 543 *************************************************** ******** consensus_5174#0 AAGAATGCAGTACGAAAAACAATGATCGTCTTTTGCAGATTACAGGCCATTAAAAACAAA 948 consensus_5174#1 AAGA---TACCTCGGGGGATTCTT------------------------------------ 564 **** * ** * * consensus_5174#0 ACAGTAAAGCGCTGTTTCTAAACGGTAAAATTGTAAAAGTAAAAAGTTCACCGAAGTAAA 1008 consensus_5174#1 ------------------------------------------------------------ consensus_5174#0 GGTAGCAGAATTAAAACCGAAACCTACAGACTGCTAGTATCAGTATCCCTATGACAAGAG 1068 consensus_5174#1 ------------------------------------------------------------ consensus_5174#0 TTTTCCAACATCTTCGTTCCTTTATCTCTCTCTCTCTCTCTTTGTCTCTCTGTGTCCCTC 1128 consensus_5174#1 ------------------------------------------------------------ consensus_5174#0 TAAAACAGTGTTCAGTGGGATATAAAATAGTTTAAACTAACACCATTAAAACTTGACTCA 1188 consensus_5174#1 ------------------------------------------------------------ consensus_5174#0 ACATAGTCGCATTACTACGGTCGGGAGTCGCACTTTCACGCGGAACCAAAAAAAACAACA 1248 consensus_5174#1 ------------------------------------------------------------ consensus_5174#0 CCGAGTTTTTTCCTTTTCTGGTTACATTACGCATTAACGCAAAATGTTCGAAGAGAAAAT 1308 consensus_5174#1 ------------------------------------------------------------ consensus_5174#0 GTTACCACCACTATGAAAAATCCGGACACTCCCGTGTGTGTGTGTGTGTGTTAAAACTAA 1368 consensus_5174#1 ------------------------------------------------------------ consensus_5174#0 ATACAACGCAAATAAGTTCACATCCCGTTCACGGCGGCTTCAGCGTGCTTCACGGTTGGC 1428 consensus_5174#1 ------------------------------------------------------------ consensus_5174#0 GCTGCATACAGCTCACTCTCCCACACACACACACTCAACTCGCAGCTGTCGCAGCCTACT 1488 consensus_5174#1 ------------------------------------------------------------ consensus_5174#0 TCAGATCCATCTCTTCGCTGCTTTCTTCTGCACTTTCGTTATTACTGTCCGATTGTTCCG 1548 consensus_5174#1 ------------------------------------------------------------ consensus_5174#0 TCTGTTTGTTCTTTGTGTCGCGCGCTTTTTCGGGTGCGGAGGATGACGACGACGGCTTCA 1608 consensus_5174#1 ------------------------------------------------------------ consensus_5174#0 CCGGCGCCGGTAGTTCGCCACCATTGCTGGGTGCGTCGTCCCGCGCCGCCCCACCCACGC 1668 consensus_5174#1 ------------------------------------------------------------ consensus_5174#0 GTCCGCCCACGCGTCCGCGG 1688 consensus_5174#1 -------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||