These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5176#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 697 fasta sequence [CCGCAATCATCTATTCATGGCAATTCATACCTTAAAATACGATCCAAACTCATACCGGTACCCCGCGGGCGCTCACCACTATGTATCCACTACTATTTCGTACTCGAACCTTCAAAATGACGCTCAGAACGCTTCAGCCACACGTTACACAGACACCGCACAACAACACACCTTCCCAACCACACAAGCTAACGCTCTCAACAACTGCAACATGAACATGAAGCGTATAAAGAAAGGCATACCATTATTAACAAAGTACATACTGAAAACATGCTAGACAAGAATAAATTAACGCCCCAAAAAACACACACACACAAGCACACACGATATCCCAGCATAGTAGGAAAACCGGGGGGGAGTGCGAGCAAAGCGAAAAAGAACAAAAAAAAAATACAATGGAACGTAACAAGTAAACAATTTGTAACATAAAATAATGACTAAAATCCAAAAAAATGAGGAAAATGTTGTTTTTATATATTTGTACGAAATAGTTATTAGCAATTAAAGGAAATAAAAAAAAAATTAATATGGAAAAGGTACGAAAATTTAACAAAAAACATGACACATGAAACAAACCCGAACAGGCAGGCGAATATGGTGAAAAAAGAAAATAGGAAAATAGGAGGTAGCGAAGGAGAGCGAACTATCGAGTTAAAACGATGCTCGTTTTTGCAGCCGCGTGACAGCCGTGCCGCGA] [+] EMBL BM623667 [CCGCAATCATCTATTCATGGCAATTCATACCTTAAAATACGATCCAAACTCATACCGGTACCCCGCGGGCGCTCACCACTATGTATCCACTACTATTTCGTACTCGAACCTTCAAAATGACGCTCAGAACGCTTCAGCCACACGTTACACAGACACCGCACAACAACACACCTTCCCAACCACACAAGCTAACGCTCTCAACAACTGCAACATGAACATGAAGCGTATAAAGAAAGGCATACCATTATTAACAAAGTACATACTGAAAACATGCTAGACAAGAATAAATTAACGCCCCAAAAAACACACACACACAAGCACACACGATATCCCAGCATAGTAGGAAAACCGGGGGGGAGTGCGAGCAAAGCGAAAAAGAACAAAAAAAAAATACAATGGAACGTAACAAGTAAACAATTTGTAACATAAAATAATGACTAAAATCCAAAAAAATGAGGAAAATGTTGTTTTTATATATTTGTACGAAATAGTTATTAGCAATTAAAGGAAATAAAAAAAAAATTAATATGGAAAAGGTACGAAAATTTAACAAAAAACATGACACATGAAACAAACCCGAACAGGCAGGCGAATATGGTGAAAAAAGAAAATAGGAAAATAGGAGGTAGCGAAGGAGAGCGAACTATCGAGTTAAAACGATGCTCGTTTTTGCAGCCGCGTGACAGCCGTGCCGCGA] consensusID : consensus_5176#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 693 fasta sequence [TCCCCCGAGGTTAAATGGAGGCGAAGCTAGGCTCCCAAACAGAGGGGAGGGCCGAGTCAAGACATAAGCAACAGTATAACAGTATGTGTATGTGAAGATAAACTAATAAACGTACTAATAAACTGCACCTCGGGTAATGAAACGAGGAGAATAAAGAGTAAAAGACAAACAAATAGGAAATATCTAATACAATTTACCGAGGAAAGCCGGGGCGCCGGGCTCCGTGATGGACGGGGGAGGAAAGTGCAGGTCATAGTAGAACAAACCACACATACATGTAGAAACAAGATACACACACACAAACAGACACACACATAAACACATACATGCAATATAAGCTAACTAAATGCAAAGTAAATCAATCATCTATTCATGGCAATTCATACCTTANAAATACGATCCAAACTCATACCGGTACACCCGCGGGCGCTCACCACTATGTATCCATTACTATTTCGTACTCGAACCTTCAAACATGACGCTCAGNAACGCTTCAGCCACCACGTTACACAGACACCGCACAACAACACACCTTCCCAAGCAGCACCAAAGCTNAACGCCTCTCCCACCAAACTGCCCACCATGAACCATTGCAAGCCGTCATTAAAGAACAGGGCNTTACCCACTTATCTCAACCNAAGTCACCATACTGGACAACANNTGCTAGCANCACGCACATAAACTTANCGCCCC] [+] EMBL AL694805 [TCCCCCGAGGTTAAATGGAGGCGAAGCTAGGCTCCCAAACAGAGGGGAGGGCCGAGTCAAGACATAAGCAACAGTATAACAGTATGTGTATGTGAAGATAAACTAATAAACGTACTAATAAACTGCACCTCGGGTAATGAAACGAGGAGAATAAAGAGTAAAAGACAAACAAATAGGAAATATCTAATACAATTTACCGAGGAAAGCCGGGGCGCCGGGCTCCGTGATGGACGGGGGAGGAAAGTGCAGGTCATAGTAGAACAAACCACACATACATGTAGAAACAAGATACACACACACAAACAGACACACACATAAACACATACATGCAATATAAGCTAACTAAATGCAAAGTAAATCAATCATCTATTCATGGCAATTCATACCTTANAAATACGATCCAAACTCATACCGGTACACCCGCGGGCGCTCACCACTATGTATCCATTACTATTTCGTACTCGAACCTTCAAACATGACGCTCAGNAACGCTTCAGCCACCACGTTACACAGACACCGCACAACAACACACCTTCCCAAGCAGCACCAAAGCTNAACGCCTCTCCCACCAAACTGCCCACCATGAACCATTGCAAGCCGTCATTAAAGAACAGGGCNTTACCCACTTATCTCAACCNAAGTCACCATACTGGACAACANNTGCTAGCANCACGCACATAAACTTANCGCCCC] consensusID : consensus_5176#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 540 fasta sequence [CCGGCGCGCACAAGCTGCCATGGCAAGGGGAGTTTTATTTGTAGGTTCATTTTATACGAAAGCAAATACCGGTAACTAACGAGACGAGAGGTAAATAATAATCACAGTAAAGCAAACAAACAAGAAGATGAAGAAGAAGAAAACAAACCTTTTTAACAATATTTCAATCTAGCAAAGCCAAACCAAGAGAGACAGACACACACAAAGAAAAGTGAAAAAAAAACAGCAAACGAAATGGAGGCGAAGCAAGGCTCCCAAACCAGAGGGAAGGGCCGTGTCAAGACATAAGCAACAGTATAACAGTATGTGTATGTGAAGATAAACTAATAAACGTACTAATAAACTGCACCTCGGGTAATGAAACGAGGAGAATAAAGAGTAAAAGACAAACAAATAGGAAATATCTAATACAATTTACCGAGGAAAGCCGGGGCGCCGGGCTCCGTGATGGACGGGGGAGGAAAGTGCAGGTCATAGTAGAACAAACCCACACATACATGTAGAAACAAGATACACACACACACCAACAGATACACACAC] [+] EMBL BM638816 [CCGGCGCGCACAAGCTGCCATGGCAAGGGGAGTTTTATTTGTAGGTTCATTTTATACGAAAGCAAATACCGGTAACTAACGAGACGAGAGGTAAATAATAATCACAGTAAAGCAAACAAACAAGAAGATGAAGAAGAAGAAAACAAACCTTTTTAACAATATTTCAATCTAGCAAAGCCAAACCAAGAGAGACAGACACACACAAAGAAAAGTGAAAAAAAAACAGCAAACGAAATGGAGGCGAAGCAAGGCTCCCAAACCAGAGGGAAGGGCCGTGTCAAGACATAAGCAACAGTATAACAGTATGTGTATGTGAAGATAAACTAATAAACGTACTAATAAACTGCACCTCGGGTAATGAAACGAGGAGAATAAAGAGTAAAAGACAAACAAATAGGAAATATCTAATACAATTTACCGAGGAAAGCCGGGGCGCCGGGCTCCGTGATGGACGGGGGAGGAAAGTGCAGGTCATAGTAGAACAAACCCACACATACATGTAGAAACAAGATACACACACACACCAACAGATACACACAC] consensusID : consensus_5176#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 133 fasta sequence [TGCCACACCACAGGAGCCACACGCGCACACGCGGGTAATGAAACGAGGAGAATAAAGAGTAAAAGACAAACAAATAGGAAATATCTAATACAATTTACCGAGGAAAGCCGGGGCGCCGGGCTCCGTGATGGAC] [+] EMBL BX612445 [TGCCACACCACAGGAGCCACACGCGCACACGCGGGTAATGAAACGAGGAGAATAAAGAGTAAAAGACAAACAAATAGGAAATATCTAATACAATTTACCGAGGAAAGCCGGGGCGCCGGGCTCCGTGATGGAC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_5176#2 CCGGCGCGCACAAGCTGCCATGGCAAGGGGAGTTTTATTTGTAGGTTCATTTTATACGAA 60 consensus_5176#3 ------------------------------------------------------------ consensus_5176#1 ------------------------------------------------------------ consensus_5176#0 --------CCGCAATCATCTATTCATGGCAATTCATACCTTAAAATACGATCCAAACTCA 52 consensus_5176#2 AGCAAATACCGGTAACTAACGAGACGAGAGGTAAATAATAATCACAGTAAAGCAAACAAA 120 consensus_5176#3 ------------------------------------------------------------ consensus_5176#1 ------------------------------------------------------------ consensus_5176#0 TACCGGTACCCCGCGGGCGCTCACCACTATGTATCCACTACTATTTCGTACTCGAACCTT 112 consensus_5176#2 CAAGAAGATGAAGAAGAAGAAAACAAACCTTTTTAACAATATTTCAATCTAGCAAAGCCA 180 consensus_5176#3 ------------------------------------------------------------ consensus_5176#1 ------------------------------------------------------------ consensus_5176#0 CAAAATGACGCTCAGAACGCTTCAGCCACACGTTACACAGACACCGCACAACAACACACC 172 consensus_5176#2 AACCAAGAGAGACAGACACACACAAAGAA-AAGTGAAAAAAAAACAGCAAACG---AAAT 236 consensus_5176#3 ------------------------------------------------------------ consensus_5176#1 -----------------------------------------TCCCCCGAGGTT---AAAT 16 consensus_5176#0 TTCCCAACCACACAAGCTAACGCTCTCAACAACTGCAACATGAACATGAAGCGTATAAAG 232 consensus_5176#2 GGAGGCGAAGCAAGGCTCCCAAACCAGAGGGAAGGGCCGTGTCA---AGACATAAGCAAC 293 consensus_5176#3 ------------------------------------------------------------ consensus_5176#1 GGAGGCGAAGCTAGGCTCCCAAAC-AGAGGGGAGGGCCGAGTCA---AGACATAAGCAAC 72 consensus_5176#0 AAAGGCATACCATTATTAACAAAGTACATACTGAAAACATGCTAGACAAGAATAAATTAA 292 consensus_5176#2 AGTATAACAGTATGTGTATGTGAAGATAAAC-TAATAAACGTAC-TAATAAACTGCACCT 351 consensus_5176#3 --------------------------TGCCA-CACCACAGGAGC-CACACGCGCACACG- 31 consensus_5176#1 AGTATAACAGTATGTGTATGTGAAGATAAAC-TAATAAACGTAC-TAATAAACTGCACCT 130 consensus_5176#0 CGCCCCAAAAAACACACACACACAAGCACACACGATATCCCAGCATAGTAGGAAAACCGG 352 * * * * consensus_5176#2 CGGGTAATGAAACGAGGAGAATAAAGAGTAAAAGACAAACA-AATAGGAAATATCTAATA 410 consensus_5176#3 CGGGTAATGAAACGAGGAGAATAAAGAGTAAAAGACAAACA-AATAGGAAATATCTAATA 90 consensus_5176#1 CGGGTAATGAAACGAGGAGAATAAAGAGTAAAAGACAAACA-AATAGGAAATATCTAATA 189 consensus_5176#0 GGGGGAGTGCGAGCAAAGCGAAAAAGAACAAAAAAAAAATACAATGGAACGTAACAAGTA 412 *** * ** * * * ***** **** * *** * *** * * ** * * ** consensus_5176#2 --CAATTTACCGAGGAAAGCCGGGGCGCCGGGCTCCGTGATGGACGGGGGAGGAAAGTGC 468 consensus_5176#3 --CAATTTACCGAGGAAAGCCGGGGCGCCGGGCTCCGTGATGGAC--------------- 133 consensus_5176#1 --CAATTTACCGAGGAAAGCCGGGGCGCCGGGCTCCGTGATGGACGGGGGAGGAAAGTGC 247 consensus_5176#0 AACAATTTGTAACATAAAATAATGACTAAAATCCAAAAAAATGAGGAAAATGTTGTTTTT 472 ****** *** * * * * ** consensus_5176#2 AGGTCATAGTAGAACAAACCCACACATACATGTAGAAACAAGATACACACACACACCAAC 528 consensus_5176#3 ------------------------------------------------------------ consensus_5176#1 AGGTCATAGTAGAACAAACC-ACACATACATGTAGAAACAAGATACACACACACA--AAC 304 consensus_5176#0 ATATATTTGTACGAAATAGTTATTAGCAATTAAAGGAAATAAAAAAAAAATTAATATGGA 532 consensus_5176#2 AGATACACACAC------------------------------------------------ 540 consensus_5176#3 ------------------------------------------------------------ consensus_5176#1 AGACACACACATAAACACATACATGCAATATAAGCTAACTAAATGCAAAGTAAATCAATC 364 consensus_5176#0 AAAGGTACGAAAATTTAACAAAAAACATGACACATGAAACAAACCCGAACAGGCAGGCGA 592 consensus_5176#2 ------------------------------------------------------------ consensus_5176#3 ------------------------------------------------------------ consensus_5176#1 ATCTATTCATGGCAATTCATACCTTANAAATACGATCCAAACTCATACCGGTACACCCGC 424 consensus_5176#0 ATATGGTGAAAAAAGAAAATAGGAAAATAGGAGGTAGCGAAGGAGAGCGAACTATCGAGT 652 consensus_5176#2 ------------------------------------------------------------ consensus_5176#3 ------------------------------------------------------------ consensus_5176#1 GGGCGCTCACCACTATGTATCCATTACTATTTCGTACTCGAACCTTCAAACATGACGCTC 484 consensus_5176#0 TAAAACGATGCTCGTTTTTGCAGCCGCGTGACAGCCGTGCCGCGA--------------- 697 consensus_5176#2 ------------------------------------------------------------ consensus_5176#3 ------------------------------------------------------------ consensus_5176#1 AGNAACGCTTCAGCCACCACGTTACACAGACACCGCACAACAACACACCTTCCCAAGCAG 544 consensus_5176#0 ------------------------------------------------------------ consensus_5176#2 ------------------------------------------------------------ consensus_5176#3 ------------------------------------------------------------ consensus_5176#1 CACCAAAGCTNAACGCCTCTCCCACCAAACTGCCCACCATGAACCATTGCAAGCCGTCAT 604 consensus_5176#0 ------------------------------------------------------------ consensus_5176#2 ------------------------------------------------------------ consensus_5176#3 ------------------------------------------------------------ consensus_5176#1 TAAAGAACAGGGCNTTACCCACTTATCTCAACCNAAGTCACCATACTGGACAACANNTGC 664 consensus_5176#0 ------------------------------------------------------------ consensus_5176#2 ----------------------------- consensus_5176#3 ----------------------------- consensus_5176#1 TAGCANCACGCACATAAACTTANCGCCCC 693 consensus_5176#0 ----------------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||