cluster # 5180

These datas are free for academic use only, please contact me for any other use.

Anopheles gambiae
cluster # 5180 cluster # 5180 Sequences # 4 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_5180#0 length = 820 sequences # 3

consensus_5180#1 length = 642 sequences # 1

consensusID : consensus_5180#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 820
fasta sequence

                              [AGTCTCCTACCGAGTTGCGTATCAACAAGATCGATTGATAACGCGAACAACGGGGAGCGCAATTTAAAGCTCTTCCCACCAGCGAAACCCCAAAACAGATAAAGTGTGTGCGGAACGATGTTTCAGGCGTTGCAACGAAGATCCTCCAAGCTGTCCGTACTACGGCAGGCCCGAAATCAACAGCCCCGCATCACATACAGCTCCAGGCGACAGTATGCCTCATCCGGCGAGGGAAGCAAAGGCGACTCCGGCAAACCCAGCGGAGATTTTTCCGACCAGGTAGAAGCGAACAAGGATAATCCGATCTCGCGCACCCTAAAGCTGATCGGCAACGATGTGCAACGGATGAAAAAGTTCATCCTACCGAGCAGTTACACAAACCCAGGTGCTAAGAGTGATTCCCCCGATTCCACGCATTCGATCGAAAACTACCTCGAACGATACCGAAGGGACGGGTTTCAATCGCACTGCGATGTGCTCGTAATCGGCGGTGGCGGTGTCGGATCGTCCATAGCCTACTGGCTGAAGAAGCGAGCCCGCCAGGGCCTGAACGTGGTGGTGCTGGAAAAGGATGCAACGTACGCGCAGGCCTCCACCTGTCTGTCGGTGGGCGGACTGCGGCAGCAGTTTTCCATCGTCGAAAACATCCAGATGAGCCTGTACGGGGCTGACTTTATGCGCAACAGCCGGGACTATCTGGGGGACGACGTCGATCTTAACTTCA-CCCCGCACGGCTACTTGCTGCTCGCGAGTGAGGCGGGCGCGGAACAGCTGGAGCAAAACTCGAAGCTACAGTGTGCGCTCGGGGCGAGAATGAGCT]

[+] EMBL BX607679             [AGTCTCCTACCGAGTTGCGTATCAACAAGATCGATTGATAACGCGAACAACGGGGAGCGCAATTTAAAGCTCTTCCCACCAGCGAAACCCCAAAACAGATAAAGTGTGTGCAAAACGATGTTTCAGGCGTTGCAACGAAGATCCTCCAAGCTGTCCGTACTACGGCAGGCCCGAAATCAACAGCCCCGCATCACATACAGCTCCAGACGACAGTATGCCTCATCCGGCGAGGGAAGCAAAGGCGGCTCCGGCAAACCCAGCGGAGATTTTTCCGACCAGGTAGAAGCGAACAAGGATAATCCGATCTCGCGCACCCTAAAGCTGATCGGCAACGATGTGCAGCGGATGAAAAAGTTCATCCTACCGAGCAGTTACACAAACCCAGGTGCTAAGGGTGATTCGCCCGATTCCGCGAATTCGATCGAAAACTACCTCGAACGGTACCGAAGGGACGGGTTCCAATCGCACTGCGACGTGCTCGTAATCGGTGGTGGCGGTGTCGGATCGTCCATAGCCTACTGGCTGAAGAAGCGAGCCCGCCAGGGCCTGAACGTGGTGGTGCTGGAGAAGGATGCAACGTACGCGCAGGCCTCCACCTGTCTGTCGGTGGGCGGACTGCGGCAGCAGTTTTCCATCGTCGAAAACATCCAGATGAGCCTTTACGGGGCTGACTTTATGCGCAACAGCCGGGACTATCTGGGGGACGACGTCGATCTTAACTTCA CCCCGCACGGCTACTTGCTGCTCGCGAGTGAGGCGGGCGCGGAACAGCTGGAGCAAAACTCGAAGCTACAGTGTGCGCTCGGGGCGAGAATGAGCT]
[+] EMBL BM644185             [             ccgGCGTATCAACAAGATCGATTGATAACGCGAACAACGGGGAGCGCAATTTAAAGCTCTTCCCACCAGCGAAACCCCAAAACAGATAAAGTGTGATCGGAACGATGTTTCAGGCGTTGCAACGAAGATCCTCCAAGCTGTCCGTACTACGGCAGGCCCGAAATCAACAGCCCCGCATCACATACAGCTCCAGGCGACAGTATGCCTCATCCGGCGAGGGAAGCAAAGGCGACTCCGGCAAACCCAGCGGAGATTTTTCCGACCAGGTAGAAGCGAACAAGGATAATCCGATCTCGCGCACCCTAAAGCTGATCGGCAACGATGTGCAACGGATGAAAAAGTTCATCCTACCGAGCAGTTACACAAACCCAGGTGCTAAGAGTGATTCCCCCGATTCCACGCATTCGATCGAAAACTACCTCGAACGATACCGAAGGGACGGGTTTCAATCGCACTGCGATGTGCTCGTAATCGGCGGTGGCGGTGTCGGATCGTCCATAGCCTACTGGCTGAAGAAGCGAGCCCGCCAGGGCCTGAACGTGGTGGTGCTGGAAAAGGATGCAACGTACGCGCAGGCCTCCACCTGTCTGTCGGTGGGCGGACTGCGGCAGCAGTTTTCCATCGTCGAAAACATCCAGATGAGCCTGT                                                                                                                                                                ]
[+] EMBL BM631958             [                                                                                                             cCGGAACGATGTTTCAGGCGTTGCAACGAAGATCCTCCAAGCTGTCCGTACTACGGCAGGCCCGAAATCAACAGCCCCGCATCACATACAGCTCCAGGCGACAGTATGCCTCATCCGGCGAGGGAAGCAAAGGCGACTCCGGCAAACCCAGCGGAGATTTTTCCGACCAGGTAGAAGCGAACAAGGATAATCCGATCTCGCGCACCCTAAAGCTGATCGGCAACGATGTGCAACGGATGAAAAAGTTCATCCTACCGAGCAGTTACACAAACCCAGGTGCTAAGAGTGATTCCCCCGATTCCACGCATTCGATCGAAAACTACCTCGAACGATACCGAAGGGACGGGTTTCAATCGCACTGCGATGTGCTCGTAATCGGCGGTGGCGGTGTCGGATCGTCCATAGCCTACTGGCTGAAGAAGCGAGCCCGCCAGGGCCTGAACGTGGTGGTGCTGGAAAAGGATGCAACGTACGCGCAGGCCTCCACCTGTCTGTCGGTGGGCGGACTGCGGCAGCAGTTTTCCATCGTCGAAAACATCCAGATGAGCCTGTACGGGGCGGACTTTATGCGTAACAGCAGGGACTATCTGGGGGACGACGTCGATCTTAACTTTACCCCCGCACGGTTACTTGCTGCTCGCGAGTGAGGCGGGCGCGGAACAGCTGGAGCAAAACTCGAAGCTACAGTG                       ]




>consensus_5180#0
AGTCTCCTACCGAGTTGCGTATCAACAAGATCGATTGATAACGCGAACAACGGGGAGCGC
AATTTAAAGCTCTTCCCACCAGCGAAACCCCAAAACAGATAAAGTGTGTGCGGAACGATG
TTTCAGGCGTTGCAACGAAGATCCTCCAAGCTGTCCGTACTACGGCAGGCCCGAAATCAA
CAGCCCCGCATCACATACAGCTCCAGGCGACAGTATGCCTCATCCGGCGAGGGAAGCAAA
GGCGACTCCGGCAAACCCAGCGGAGATTTTTCCGACCAGGTAGAAGCGAACAAGGATAAT
CCGATCTCGCGCACCCTAAAGCTGATCGGCAACGATGTGCAACGGATGAAAAAGTTCATC
CTACCGAGCAGTTACACAAACCCAGGTGCTAAGAGTGATTCCCCCGATTCCACGCATTCG
ATCGAAAACTACCTCGAACGATACCGAAGGGACGGGTTTCAATCGCACTGCGATGTGCTC
GTAATCGGCGGTGGCGGTGTCGGATCGTCCATAGCCTACTGGCTGAAGAAGCGAGCCCGC
CAGGGCCTGAACGTGGTGGTGCTGGAAAAGGATGCAACGTACGCGCAGGCCTCCACCTGT
CTGTCGGTGGGCGGACTGCGGCAGCAGTTTTCCATCGTCGAAAACATCCAGATGAGCCTG
TACGGGGCTGACTTTATGCGCAACAGCCGGGACTATCTGGGGGACGACGTCGATCTTAAC
TTCACCCCGCACGGCTACTTGCTGCTCGCGAGTGAGGCGGGCGCGGAACAGCTGGAGCAA
AACTCGAAGCTACAGTGTGCGCTCGGGGCGAGAATGAGCT

consensusID : consensus_5180#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 642
fasta sequence

                              [CCCGNGGTTTGAAACCCAAAACAGATAAGTGTGTGCANAACGATGTTTCAGGCGTTGCAACGAAGATCCTCCAAGCTGTCCTGTACTACGTGCAGTGCCCTGAAATCAACAGCCCCGCATCACATACATGCTCCAGACGACAGTATGCCTCATCCGGCGAGGNGAATGCAAAGGCTGGCTCCTGGCAAACCCAGCGGAGATTTTTCCGACCAGGTAGAAGCGAACAAGGATAATCCGATCTCGCGCACCCTAAAGCTGATCGGCAACGATGTGCAGCGGATGAAAAAGTTCATCCTACCGAGCAGTTACACAAACCCAGGTGCTAAGGGTGATTCGCCCGATTCCGCGAATTCGATCGAAAACTACCTCGAACGGTACCGAAGGGACGGGTTCCAATCGCACTGCGACGTGCTCGTAATCGGTGGTGGCGGTGTCGGATCCGTCCATAGCCTACTGGCTGAAGAAGCGAGCCCGCCAGGGCCTGAACGTGGTGGTGCTGGCAGAAGGATGCAACGTACGCGCAGTGCCTCCACCTGTCTGTCGGTGGGCGGACTGCGGCAGCAGTTTTCCATCGTCGAAAACATCCAGATGAGCCTTAACGGGGCTGACTTTATGCGCAACAGCCGGACTATCTGGGGGACG]

[+] EMBL AL694881             [CCCGNGGTTTGAAACCCAAAACAGATAAGTGTGTGCANAACGATGTTTCAGGCGTTGCAACGAAGATCCTCCAAGCTGTCCTGTACTACGTGCAGTGCCCTGAAATCAACAGCCCCGCATCACATACATGCTCCAGACGACAGTATGCCTCATCCGGCGAGGNGAATGCAAAGGCTGGCTCCTGGCAAACCCAGCGGAGATTTTTCCGACCAGGTAGAAGCGAACAAGGATAATCCGATCTCGCGCACCCTAAAGCTGATCGGCAACGATGTGCAGCGGATGAAAAAGTTCATCCTACCGAGCAGTTACACAAACCCAGGTGCTAAGGGTGATTCGCCCGATTCCGCGAATTCGATCGAAAACTACCTCGAACGGTACCGAAGGGACGGGTTCCAATCGCACTGCGACGTGCTCGTAATCGGTGGTGGCGGTGTCGGATCCGTCCATAGCCTACTGGCTGAAGAAGCGAGCCCGCCAGGGCCTGAACGTGGTGGTGCTGGCAGAAGGATGCAACGTACGCGCAGTGCCTCCACCTGTCTGTCGGTGGGCGGACTGCGGCAGCAGTTTTCCATCGTCGAAAACATCCAGATGAGCCTTAACGGGGCTGACTTTATGCGCAACAGCCGGACTATCTGGGGGACG]




>consensus_5180#1
CCCGNGGTTTGAAACCCAAAACAGATAAGTGTGTGCANAACGATGTTTCAGGCGTTGCAA
CGAAGATCCTCCAAGCTGTCCTGTACTACGTGCAGTGCCCTGAAATCAACAGCCCCGCAT
CACATACATGCTCCAGACGACAGTATGCCTCATCCGGCGAGGNGAATGCAAAGGCTGGCT
CCTGGCAAACCCAGCGGAGATTTTTCCGACCAGGTAGAAGCGAACAAGGATAATCCGATC
TCGCGCACCCTAAAGCTGATCGGCAACGATGTGCAGCGGATGAAAAAGTTCATCCTACCG
AGCAGTTACACAAACCCAGGTGCTAAGGGTGATTCGCCCGATTCCGCGAATTCGATCGAA
AACTACCTCGAACGGTACCGAAGGGACGGGTTCCAATCGCACTGCGACGTGCTCGTAATC
GGTGGTGGCGGTGTCGGATCCGTCCATAGCCTACTGGCTGAAGAAGCGAGCCCGCCAGGG
CCTGAACGTGGTGGTGCTGGCAGAAGGATGCAACGTACGCGCAGTGCCTCCACCTGTCTG
TCGGTGGGCGGACTGCGGCAGCAGTTTTCCATCGTCGAAAACATCCAGATGAGCCTTAAC
GGGGCTGACTTTATGCGCAACAGCCGGACTATCTGGGGGACG

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_5180#0      AGTCTCCTACCGAGTTGCGTATCAACAAGATCGATTGATAACGCGAACAACGGGGAGCGC 60
consensus_5180#1      ------------------------------------------------------------
                                                                                  

consensus_5180#0      AATTTAAAGCTCTTCCCACCAGCGAAACCCCAAAACAGATAAAGTGTGTGCGGAACGATG 120
consensus_5180#1      --------------CCCGNGGTTTGAAACCCAAAACAGATAA-GTGTGTGCANAACGATG 45
                                    ***        ** ************** ********  *******

consensus_5180#0      TTTCAGGCGTTGCAACGAAGATCCTCCAAGCTGTCC-GTACTACG-GCAGG--CCCGAAA 176
consensus_5180#1      TTTCAGGCGTTGCAACGAAGATCCTCCAAGCTGTCCTGTACTACGTGCAGTGCCCTGAAA 105
                      ************************************ ******** ****   ** ****

consensus_5180#0      TCAACAGCCCCGCATCACATACA-GCTCCAGGCGACAGTATGCCTCATCCGGCGAGGGAA 235
consensus_5180#1      TCAACAGCCCCGCATCACATACATGCTCCAGACGACAGTATGCCTCATCCGGCGAGGNGA 165
                      *********************** ******* *************************  *

consensus_5180#0      --GCAAAGGC-GACTCC-GGCAAACCCAGCGGAGATTTTTCCGACCAGGTAGAAGCGAAC 291
consensus_5180#1      ATGCAAAGGCTGGCTCCTGGCAAACCCAGCGGAGATTTTTCCGACCAGGTAGAAGCGAAC 225
                        ******** * **** ******************************************

consensus_5180#0      AAGGATAATCCGATCTCGCGCACCCTAAAGCTGATCGGCAACGATGTGCAACGGATGAAA 351
consensus_5180#1      AAGGATAATCCGATCTCGCGCACCCTAAAGCTGATCGGCAACGATGTGCAGCGGATGAAA 285
                      ************************************************** *********

consensus_5180#0      AAGTTCATCCTACCGAGCAGTTACACAAACCCAGGTGCTAAGAGTGATTCCCCCGATTCC 411
consensus_5180#1      AAGTTCATCCTACCGAGCAGTTACACAAACCCAGGTGCTAAGGGTGATTCGCCCGATTCC 345
                      ****************************************** ******* *********

consensus_5180#0      ACGCATTCGATCGAAAACTACCTCGAACGATACCGAAGGGACGGGTTTCAATCGCACTGC 471
consensus_5180#1      GCGAATTCGATCGAAAACTACCTCGAACGGTACCGAAGGGACGGGTTCCAATCGCACTGC 405
                       ** ************************* ***************** ************

consensus_5180#0      GATGTGCTCGTAATCGGCGGTGGCGGTGTCGGATC-GTCCATAGCCTACTGGCTGAAGAA 530
consensus_5180#1      GACGTGCTCGTAATCGGTGGTGGCGGTGTCGGATCCGTCCATAGCCTACTGGCTGAAGAA 465
                      ** ************** ***************** ************************

consensus_5180#0      GCGAGCCCGCCAGGGCCTGAACGTGGTGGTGCTGG-AAAAGGATGCAACGTACGCGCAG- 588
consensus_5180#1      GCGAGCCCGCCAGGGCCTGAACGTGGTGGTGCTGGCAGAAGGATGCAACGTACGCGCAGT 525
                      *********************************** * ********************* 

consensus_5180#0      GCCTCCACCTGTCTGTCGGTGGGCGGACTGCGGCAGCAGTTTTCCATCGTCGAAAACATC 648
consensus_5180#1      GCCTCCACCTGTCTGTCGGTGGGCGGACTGCGGCAGCAGTTTTCCATCGTCGAAAACATC 585
                      ************************************************************

consensus_5180#0      CAGATGAGCCTGTACGGGGCTGACTTTATGCGCAACAGCCGGGACTATCTGGGGGACGAC 708
consensus_5180#1      CAGATGAGCCTTAACGGGGCTGACTTTATGCGCAACAGCCGG-ACTATCTGGGGGACG-- 642
                      ***********  ***************************** ***************  

consensus_5180#0      GTCGATCTTAACTTCACCCCGCACGGCTACTTGCTGCTCGCGAGTGAGGCGGGCGCGGAA 768
consensus_5180#1      ------------------------------------------------------------
                                                                                  

consensus_5180#0      CAGCTGGAGCAAAACTCGAAGCTACAGTGTGCGCTCGGGGCGAGAATGAGCT 820
consensus_5180#1      ----------------------------------------------------