|
These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5181#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 733 fasta sequence
[CCGCAGGAAGGCATCAGAAACACTTCGAGGTAGATCATCGGACAGCACTGATACATCATGGCCCGTCCCCTACTATCTCCGATTATTTTGCTCTTCATGGTATCCACACTATTTCGCTTATCTGCCAGTAATCGTGAGGCGATAGGTTATAGAGTTTTGCAGCAGAAATCGTACTACCTCGGTACCACATTCAGGCTAAACTGGCATAAGGCAGCCGCTTTCTGCCGATCGCAAGGACTCTTCCTGGTCTCGATCAACAGCCAGTCACAGCTAGATGAAGTGATTGAGTACGTGAACAAAAGTGGATTCTTTAATGCGAACGAGAGCAACCTGCAACTGTGGACATCGGGCAATGATTTGGGAGAGAAAAATCAATTCCTCTGGACGTCGACCGGTGAGAGGATCACGTTTAATCAATGGACTCAGGGTGAACCAAATCATGCTCAGGTGGGCAACTGTACAGTGGAGCATTGTGTGGTGCTGCAGCACTACCAAAACGGTCTCGGTGCTACCTATTCGTTTGATGATAGAGCATGTGAATGGCAATACTATTTCATGTGCGAATCCTTAGATTGTTAGAGTGCAGGATAACGTGTTGGGGTGGTGAAGGAGTTGGATTAATTTAAAATTTAATACATAAGTTTTTTTTTCGTAAAGATTATATCATACGAATCAACAGCGATAAGTGATTCGTATCTCGAATCAAATCTCTTAAAATAAACGAATTGCTAAT]
[+] EMBL BM600633 [CCGCAGGAAGGCATCAGAAACACTTCGAGGTAGATCATCGGACAGCACTGATACATCATGGCCCGTCCCCTACTATCTCCGATTATTTTGCTCTTCATGGTATCCACACTATTTCGCTTATCTGCCAGTAATCGTGAGGCGATAGGTTATAGAGTTTTGCAGCAGAAATCGTACTACCTCGGTACCACATTCAGGCTAAACTGGCATAAGGCAGCCGCTTTCTGCCGATCGCAAGGACTCTTCCTGGTCTCGATCAACAGCCAGTCACAGCTAGATGAAGTGATTGAGTACGTGAACAAAAGTGGATTCTTTAATGCGAACGAGAGCAACCTGCAACTGTGGACATCGGGCAATGATTTGGGAGAGAAAAATCAATTCCTCTGGACGTCGACCGGTGAGAGGATCACGTTTAATCAATGGACTCAGGGTGAACCAAATCATGCTCAGGTGGGCAACTGTACAGTGGAGCATTGTGTGGTGCTGCAGCACTACCAAAACGGTCTCGGTGCTACCTATTCGTTTGATGATAGAGCATGTGAATGGCAATACTATTTCATGTGCGAATCCTTA ]
[+] EMBL BX623220 [ TGGCCCGTCCCCTACTATCTCCGATTATTTTGCTCTTCATGGTATCCACACTATTTCGCTTATCTGCCAGTAATCGTGAGGCGATAGGTTATAGAGTTTTGCAGCAGAAATCGTACTACCTCGGTACCACATTCAGGCTGAACTGGCATAAGGCAGCCGCTTTCTGCCGATCGCAAGGACTCTTCCTGGTGTCAATTAACAGCCAGTCACAGCTAGATGAAGTGATTGAGTACATCAACAAAAGTGGATTCTTTAATGCGAACGAGAGCAACCTGCAACTGTGGACATCGGGCAATGATTTGGGAGAGAAAAATCAATTCCTCTGGACGTCGACCGGTGAGAGGATCACGTTTAATCAATGGACCCAGGGTGAACCAAATCATGCTCAGGTGGGCAACTGTACAGTGGAGCATTGTGTGGTGCTGCAGCACTACCAAAACGGTCTCGGTGCTACCTATTCGTTTGATGATAGAGCATGTGAATGGCAATACTATTTCATGTGCGAATCCTTAGATTGTTAGAGTGCAGGATAACGTGTTGGGGTGGTGAAGGAGTTGGATTAATTTAAAATTTAATACATAAGTTTTTTTTTCGTAAAGATTATATCATACGAATCAACAGCGATAAGTGATTCGTATCTCGAATCAAATCTCTTAAAATAAACGAATTGCTAAT]
consensusID : consensus_5181#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 729 fasta sequence
[TCCCCCGAGGTTAAACACTTCGAGGTAGATCATCGGACAGCACTGATACATCATGGCCCGTCCCCTACTATCTCCGATTATTTTGCTCTTCATGGTATCCACACTATTTCGCGTTATCTGCCAGTAATCGTGAGGCTGATAGGTTATAGAGTTTTGCAGCAGAAATCGTACTACCTCGGTACCACATTCAGGCTGAACTGGCATAAGGCAGCCGCTTTCTGCCGATCGCAAGGACTCTTCCTGGTGTCAATTAACAGCCAGTCACAGCTAGATGAAGTGATTGAGTACATCAACAAAAGTGGATTCTTTAATGCGAACGAGAGCAACCTGCAACTGTGGACATCGGGCAATGATTTGGGAGAGAAAAATCAATTCCTCTGGACGTCGACCGGTGAGAGGATCACGTTTAATCAATGGACCCAGGGTGAACCAAATCATGCTCACGGTGGGCAACTGTACAGTGGAGCATTGTGTGGTGCTGCAGCACTACCAAAACGGCTCTCGCGTGCTACCTATTCGCTTCGATGATAGAGCATGTGAATGGCAATCACTATTTCNTGTGCGAAATCCTTAGAATCGGTCACAANCTGCCAGGACTAACGTGGTCGNGAGGCTGGCTNGAACGGGAGCTNGGGCCTCNACTNTACACACACTTTTACACTACCNCTANGCACTCCCCCCTCCCGCANNAGCATTCCTATTCACTACNNCAATCAACAGCGAATACAG]
[+] EMBL AL694890 [TCCCCCGAGGTTAAACACTTCGAGGTAGATCATCGGACAGCACTGATACATCATGGCCCGTCCCCTACTATCTCCGATTATTTTGCTCTTCATGGTATCCACACTATTTCGCGTTATCTGCCAGTAATCGTGAGGCTGATAGGTTATAGAGTTTTGCAGCAGAAATCGTACTACCTCGGTACCACATTCAGGCTGAACTGGCATAAGGCAGCCGCTTTCTGCCGATCGCAAGGACTCTTCCTGGTGTCAATTAACAGCCAGTCACAGCTAGATGAAGTGATTGAGTACATCAACAAAAGTGGATTCTTTAATGCGAACGAGAGCAACCTGCAACTGTGGACATCGGGCAATGATTTGGGAGAGAAAAATCAATTCCTCTGGACGTCGACCGGTGAGAGGATCACGTTTAATCAATGGACCCAGGGTGAACCAAATCATGCTCACGGTGGGCAACTGTACAGTGGAGCATTGTGTGGTGCTGCAGCACTACCAAAACGGCTCTCGCGTGCTACCTATTCGCTTCGATGATAGAGCATGTGAATGGCAATCACTATTTCNTGTGCGAAATCCTTAGAATCGGTCACAANCTGCCAGGACTAACGTGGTCGNGAGGCTGGCTNGAACGGGAGCTNGGGCCTCNACTNTACACACACTTTTACACTACCNCTANGCACTCCCCCCTCCCGCANNAGCATTCCTATTCACTACNNCAATCAACAGCGAATACAG]
consensusID : consensus_5181#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 565 fasta sequence
[ACAGATCATCGAACAGCACTGTCTTCCAAGATACATCATGGCCCGTCCCCTACTATCTCCGATTATTTTGCTCTTCATAGTATCCACCCTATTTCGCTTATCTGCCAGTAATCGTGATGCGGTAGGTTATAGAGCATTTGAGGAGAAATCGTACTACCTCGGTACCACGTTCAAGTTAAACTGGCATAAGGCATCCGCTTTTTGTCGATCGCAAGGACTCTTCCTGGTATCGATCAACAGCCAGTCACAGCTAGATGGAGTCATTGAGTACATCAAGAAAAGTGGATTCTTTACTGCGAACGAAAGCAACATCCAACTGTGGACGTCGGGCAATGATTTGGGAGAGCAAAGCCAATTCCTCTGGACGTCGACCGGTGAGAGGATCACGTTTGATCGGTGGACTCANNGTGAACCCAACCACGGGCNGGTGAACGATTGTACAGTGGAGCGTTGTGTGGTGCTGCAGCACTACCAAAACGGACATGGTGCTANCTATTCGTTTGATGATAGACCATGCGAAAGGGAATACTTTTTCATGTGCGAATCGTTGGATGGTNAGAGTGTG]
[+] EMBL BX619984 [ACAGATCATCGAACAGCACTGTCTTCCAAGATACATCATGGCCCGTCCCCTACTATCTCCGATTATTTTGCTCTTCATAGTATCCACCCTATTTCGCTTATCTGCCAGTAATCGTGATGCGGTAGGTTATAGAGCATTTGAGGAGAAATCGTACTACCTCGGTACCACGTTCAAGTTAAACTGGCATAAGGCATCCGCTTTTTGTCGATCGCAAGGACTCTTCCTGGTATCGATCAACAGCCAGTCACAGCTAGATGGAGTCATTGAGTACATCAAGAAAAGTGGATTCTTTACTGCGAACGAAAGCAACATCCAACTGTGGACGTCGGGCAATGATTTGGGAGAGCAAAGCCAATTCCTCTGGACGTCGACCGGTGAGAGGATCACGTTTGATCGGTGGACTCANNGTGAACCCAACCACGGGCNGGTGAACGATTGTACAGTGGAGCGTTGTGTGGTGCTGCAGCACTACCAAAACGGACATGGTGCTANCTATTCGTTTGATGATAGACCATGCGAAAGGGAATACTTTTTCATGTGCGAATCGTTGGATGGTNAGAGTGTG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_5181#0 CCGCAGGAAGGCATCAGAAACACTTCGAGGTAGATCATCGGACAGCACTG---------A 51
consensus_5181#2 -----------------------------ACAGATCATCGAACAGCACTGTCTTCCAAGA 31
consensus_5181#1 TCCCCCGAGGTT-----AAACACTTCGAGGTAGATCATCGGACAGCACTG---------A 46
********* ********* *
consensus_5181#0 TACATCATGGCCCGTCCCCTACTATCTCCGATTATTTTGCTCTTCATGGTATCCACACTA 111
consensus_5181#2 TACATCATGGCCCGTCCCCTACTATCTCCGATTATTTTGCTCTTCATAGTATCCACCCTA 91
consensus_5181#1 TACATCATGGCCCGTCCCCTACTATCTCCGATTATTTTGCTCTTCATGGTATCCACACTA 106
*********************************************** ******** ***
consensus_5181#0 TTTCGC-TTATCTGCCAGTAATCGTGAGGC-GATAGGTTATAGAGTTTTGCAGCAGAAAT 169
consensus_5181#2 TTTCGC-TTATCTGCCAGTAATCGTGATGC-GGTAGGTTATAGAGCATTTGAGGAGAAAT 149
consensus_5181#1 TTTCGCGTTATCTGCCAGTAATCGTGAGGCTGATAGGTTATAGAGTTTTGCAGCAGAAAT 166
****** ******************** ** * ************ ** ** ******
consensus_5181#0 CGTACTACCTCGGTACCACATTCAGGCTAAACTGGCATAAGGCAGCCGCTTTCTGCCGAT 229
consensus_5181#2 CGTACTACCTCGGTACCACGTTCAAGTTAAACTGGCATAAGGCATCCGCTTTTTGTCGAT 209
consensus_5181#1 CGTACTACCTCGGTACCACATTCAGGCTGAACTGGCATAAGGCAGCCGCTTTCTGCCGAT 226
******************* **** * * *************** ******* ** ****
consensus_5181#0 CGCAAGGACTCTTCCTGGTCTCGATCAACAGCCAGTCACAGCTAGATGAAGTGATTGAGT 289
consensus_5181#2 CGCAAGGACTCTTCCTGGTATCGATCAACAGCCAGTCACAGCTAGATGGAGTCATTGAGT 269
consensus_5181#1 CGCAAGGACTCTTCCTGGTGTCAATTAACAGCCAGTCACAGCTAGATGAAGTGATTGAGT 286
******************* ** ** ********************** *** *******
consensus_5181#0 ACGTGAACAAAAGTGGATTCTTTAATGCGAACGAGAGCAACCTGCAACTGTGGACATCGG 349
consensus_5181#2 ACATCAAGAAAAGTGGATTCTTTACTGCGAACGAAAGCAACATCCAACTGTGGACGTCGG 329
consensus_5181#1 ACATCAACAAAAGTGGATTCTTTAATGCGAACGAGAGCAACCTGCAACTGTGGACATCGG 346
** * ** **************** ********* ****** * *********** ****
consensus_5181#0 GCAATGATTTGGGAGAGAAAAATCAATTCCTCTGGACGTCGACCGGTGAGAGGATCACGT 409
consensus_5181#2 GCAATGATTTGGGAGAGCAAAGCCAATTCCTCTGGACGTCGACCGGTGAGAGGATCACGT 389
consensus_5181#1 GCAATGATTTGGGAGAGAAAAATCAATTCCTCTGGACGTCGACCGGTGAGAGGATCACGT 406
***************** *** *************************************
consensus_5181#0 TTAATCAATGGACTCAGGGTGAACCAAATCATGCTCA-GGTGGGCAACTGTACAGTGGAG 468
consensus_5181#2 TTGATCGGTGGACTCANNGTGAACCCAACCACGGGCN-GGTGAACGATTGTACAGTGGAG 448
consensus_5181#1 TTAATCAATGGACCCAGGGTGAACCAAATCATGCTCACGGTGGGCAACTGTACAGTGGAG 466
** *** ***** ** ******* ** ** * * **** * * ************
consensus_5181#0 CATTGTGTGGTGCTGCAGCACTACCAAAACGG-TCTCG-GTGCTACCTATTCGTTT-GAT 525
consensus_5181#2 CGTTGTGTGGTGCTGCAGCACTACCAAAACGG-ACATG-GTGCTANCTATTCGTTT-GAT 505
consensus_5181#1 CATTGTGTGGTGCTGCAGCACTACCAAAACGGCTCTCGCGTGCTACCTATTCGCTTCGAT 526
* ****************************** * * ****** ******* ** ***
consensus_5181#0 GATAGAGCATGTGAATGGCAAT-ACTATTTCATGTGCGAA-TCCTTAGATT--GTTAGAG 581
consensus_5181#2 GATAGACCATGCGAAAGGGAAT-ACTTTTTCATGTGCGAA-TCGTTGGATG--GTNAGAG 561
consensus_5181#1 GATAGAGCATGTGAATGGCAATCACTATTTCNTGTGCGAAATCCTTAGAATCGGTCACAA 586
****** **** *** ** *** *** **** ******** ** ** ** ** * *
consensus_5181#0 TGCAGGATAACGTGTTGGGGTGGTGAAGGAGTTGGATTAATTTAAAATTTAATACATAAG 641
consensus_5181#2 TGTG-------------------------------------------------------- 565
consensus_5181#1 NCTGCCAGGAC----TAACGTGGTCGNGAGGCTGGCTNGAACGGGAGCTNGG-GCCTCNA 641
consensus_5181#0 TTTTTTTTTCGTAAAGATTATATCATACGAATCAACAGCGATAAGTGATTCGTATCTCGA 701
consensus_5181#2 ------------------------------------------------------------
consensus_5181#1 CTNTACACACACTTTTACACTACCNCTANGCACTCCCCCCTCCCGC-ANNAGCATTCCTA 700
consensus_5181#0 ATCAAATCTCTTAAAATAAACGAATTGCTAAT 733
consensus_5181#2 --------------------------------
consensus_5181#1 TTCACTACNNCAATCAACAGCGAATACAG--- 729
|
| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||