These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5185#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1282 fasta sequence [TCTTATTAAAAAATGCATTAAAAGTGCTAAATATATCTATAATAATGTAATGAATCACTTTCAACCGCACTTTCGAGGGGGAGAGCAGCAGGGAAGCTATCTTGATCGGTGGCTTCATTTGTCATCCGAGTGATTTTACGTACGTTTTCGTTTTTGTTTTAATTATAATCATATAAGAAACACACAAACAAACAAACAAACTAATCAATATATAGAGAGACTGGCTATAACATTACTTCATTAGCTTATTGTGTTAAGGTTTTTATCGTTTACTGCTGTACCCTTTTCTCATTCACTCACGTGTGTAATTCATCGGTTTGTGGTTCGTTGTGCTTGTTGTTGATGACTCGATTGACACCGGGCACAATAATATGGCTCTATATGTACAGTACCTTCCGTTGTTGGGGTTGGGCAGCTCACCAGCGAGTTGATTCATTTAGTGTTTCACTTTTCCTTACAAATAAAACAAAACTTTAGTGTTAGCTGTTTCCCGGGGGGAACAGCAGTATTCGTAACTCTATGCATATGATAATATTCACGAGATTAATCGGTAAAATGCGGTGGGTGTGTGGTTGTAGTACAACCGGCAACCCACACTCACACACTCAAACACAAACGCATACGGTCTAAGGGAAAATGGGTGATATTGTGTATTGTATCTATTCGGAACAAATGTTCGTTTTATTTCTACAAACAAATGCGTTTCTGTTTTACTACTAATCGATTACCTTATTTTGTGCTCACAATTTATATAAAACAACTAATATAACTACGTTTATCAAAACAGCAGAGCAGAGCGGCAGCGCATCATTAGCGTTCGCGCCAGCCAGTTTAAAAGATGGTATACCTGATACGGGATTATAACAATAAACATAACACTAGGAAAACACTGTAGAACAAAACACCAACCAAGCCAATAAATGCTCGATACTCGAGTGATATAGGAGCAAGATAGAGAGAGAAGAAGGCAAGCAAACACAGCGTTAAAATAACTGGTTAATTTTCATATATTCGTGTTTTGTACTTTCGGCCACCTCTAGGAAGGGTTCCATTATATAGATAATATATATACACATTTGTACGTGTACGCGTGTCAGTTCAGAACGCTGTCCGTTCATACAATTAAACGACAAATTGCTTTTTTGACTAAATGCACACACACCCTACTACTAGCCATTACAAGCTCGATTATCAATTGTATCGTAACCGACAAACAACAAACATTTAAAAGTGGGGCAGTTTTTGGTTGTTGTGTAGTTCCAACACTCTCGCCCCCCGAGCA] [+] EMBL BM630917 [TCTTATTAAAAAATGCATTAAAAGTGCTAAATATATCTATAATAATGTAATGAATCACTTTCAACCGCACTTTCGAGGGGGAGAGCAGCAGGGAAGCTATCTTGATCGGTGGCTTCATTTGTCATCCGAGTGATTTTACGTACGTTTTCGTTTTTGTTTTAATTATAATCATATAAGAAACACACAAACAAACAAACAAACTAATCAATATATAGAGAGACTGGCTATAACATTACTTCATTAGCTTATTGTGTTAAGGTTTTTATCGTTTACTGCTGTACCCTTTTCTCATTCACTCACGTGTGTAATTCATCGGTTTGTGGTTCGTTGTGCTTGTTGTTGATGACTCGATTGACACCGGGCACAATAATATGGCTCTATATGTACAGTACCTTCCGTTGTTGGGGTTGGGCAGCTCACCAGCGAGTTGATTCATTTAGTGTTTCACTTTTCCTTACAAATAAAACAAAACTTTAGTGTTAGCTGTTTCCCGGGGGGAACAGCAGTATTCGTAACTCTATGCATATGATAATATTCACGAGATTAATCGGTAAAATGCGGTGGGTGTGTGGTTGTAGTACAACCGGCAACCCACACTCACACACTCAAACACAAACGCATACGGTCTAAGGGAAAATGGGTGATATTGTGTATTGTATCTATTCGGAACAAATGGTCGTTTTATTT ] [+] EMBL BX626424 [ CGGCAACCCACACTCACACACTCAAACACAAACGCATACGGTCAAAGGGAAAATGGTTGATATTGTGTATTGTATCTATTCGGAACAAATGTTCGTTTTATTTCTACAAACAAATGCGTTTCTGTTTTACTACTAATCGATTACCTTATTTTGTGCTCACAATTTATATAAAACAACTAATATAACTACGTTTATCAAAACAGCAGAGCAGAGCGGCAGCGCATCATTAGCGTTCGCGCCAGCCAGTTTAAAAGATGGTATACCTGATACGGGATTATAACAATAAACATAACACTAGGAAAACACTGTAGAACAAAACACCAACCAAGCCAATAAATGCTCGATACTCGAGTGATATAGGAGCAAGATAGAGAGAGAAGAAGGCAAGCAAACACAGCGTTAAAATAACTGGTTAATTTTCATATATTCGTGTTTTGTACTTTCGGCCACCTCTAGGAAGGGTTCCATTATATAGATAATATATATACACATTTGTACGTGTACGCGTGTCAGTTCAGAACGCTGTCCGTTCATACAATTAAACGACAAATTGCTTTTTTGACTAAATGCACACACACCCTACTACTAGCCATTACAAGCTCGATTATCAATTGTATCGTAACCGACAAACAACAAACATTTAAA ] [+] EMBL BX627054 [ TGTATCTATTCNGAACAAATGTTCGTTTTATTTCTACAAACAAATGCGTTTCTGTTTTACTACTAATCGATTACCTTATTTTGTGCTCACAATTTATATAAAACAACTAATATAACTACGTTTATCAAAACAGCA AGCAGAGCGGCAGCGCATCATTAGCGTTCGCGCCAGCCAGTTTAAAAGATGGTATACCTGATACGGGATTATAACAATAAACATAACACTAGGAAAACACTGTAGAACAAAACACCAACCAAGCCAATAAATGCTCGATACTCGAGTGATATAGGAGCAAGATAGAGAGAGTAGAAGGCAAGCAAACACAGCGTTAAAATAACTGGTTAATTTTCATATATTCGTGTTTTGTACTTTCGGCCACCTCTAGGAAGGGTTCCCCTATATAGATAATATATATACACATTTGTACGTGTACGCGTGTCAGTTCAGAACGCTGTCCGTTCATACAATTAAACGACAAATTGCTTTTTTGACTAAATGCACACACACCCTACTACTAGCCATTACAAGCTCGATTATCAATTGTATCGTAACCGACAAACAACAAACATTTAAAAGTGGGGCAGTTTTTGGTTGTTGTGTAGTTCCAACACTCTCGCCCCCCGAGCA] consensusID : consensus_5185#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 888 fasta sequence [CAGAATCCCCGAGGTTTTAGTACCTTTTCTCATTCACTCACGTGTGTAATTCATCGGTTTGTGGTTCGTTGTGCTTGTTGTTGATGACTCGATTGACACCGGGCACAATAATATGGCTCTATATGTACAGTACCTACCGTTGTTGGGGTTGGGCAGCTCACCAGCGAGTTGATTCATTTAGTGTTATCACTTTTCCTTACAAATAAAACAAAACTTTAGTGTTAGCTGTTTCCCGGGGGGAACAGCAGTATTCGTAACTCTATGCATATGATAATATTCACGAGATTAATCGGTAAAATGCGGTGGTGTGTGGTTGTAGTACAACCGGCAACCCACACTCACACACTCAAACACAACACGCATACGAGTCANANAGGGAAANTGGTCGATATTGTGTATTCGTATCTCATTCGGACACCACCTGTTCGTTTATNTCTACAAACACNAATGCGTANTCTGTAAACTACTAATCGCTTACCTCTACTTTCTGCTCACACATTTACTATAAACAGCNAACGTANATATAACATACGTTTACTCCAANAACAAGCAAAGCCAGCAGCGGCACGCGCACTCATTACGACGTTNCGCGACCAGTCAGACCAAACNCGCATGGTCATACCCCGNATNACNCGGGATATACACAGCAAACTCACAACCATNTAAACACCTCAGGGAACACACCCCACCTGGTAAGAAANCACAAAAGCGAAGCCACAACCCAAAGGCCCACAGTCAAACATGGGCTGCCGCATCAACTCNCAGTTGGNCNATCAGGNCAGCCCCACGNCAACCACACNCGNCAGTCACNCANCGCCCNGCACAACACAACCCCGCGCGTCAACACAAGTAACACACTGCGCGGNCACAACGCCCCCACNANCCCCC] [+] EMBL AL694987 [CAGAATCCCCGAGGTTTTAGTACCTTTTCTCATTCACTCACGTGTGTAATTCATCGGTTTGTGGTTCGTTGTGCTTGTTGTTGATGACTCGATTGACACCGGGCACAATAATATGGCTCTATATGTACAGTACCTACCGTTGTTGGGGTTGGGCAGCTCACCAGCGAGTTGATTCATTTAGTGTTATCACTTTTCCTTACAAATAAAACAAAACTTTAGTGTTAGCTGTTTCCCGGGGGGAACAGCAGTATTCGTAACTCTATGCATATGATAATATTCACGAGATTAATCGGTAAAATGCGGTGGTGTGTGGTTGTAGTACAACCGGCAACCCACACTCACACACTCAAACACAACACGCATACGAGTCANANAGGGAAANTGGTCGATATTGTGTATTCGTATCTCATTCGGACACCACCTGTTCGTTTATNTCTACAAACACNAATGCGTANTCTGTAAACTACTAATCGCTTACCTCTACTTTCTGCTCACACATTTACTATAAACAGCNAACGTANATATAACATACGTTTACTCCAANAACAAGCAAAGCCAGCAGCGGCACGCGCACTCATTACGACGTTNCGCGACCAGTCAGACCAAACNCGCATGGTCATACCCCGNATNACNCGGGATATACACAGCAAACTCACAACCATNTAAACACCTCAGGGAACACACCCCACCTGGTAAGAAANCACAAAAGCGAAGCCACAACCCAAAGGCCCACAGTCAAACATGGGCTGCCGCATCAACTCNCAGTTGGNCNATCAGGNCAGCCCCACGNCAACCACACNCGNCAGTCACNCANCGCCCNGCACAACACAACCCCGCGCGTCAACACAAGTAACACACTGCGCGGNCACAACGCCCCCACNANCCCCC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_5185#0 TCTTATTAAAAAATGCATTAAAAGTGCTAAATATATCTATAATAATGTAATGAATCACTT 60 consensus_5185#1 ------------------------------------------------------------ consensus_5185#0 TCAACCGCACTTTCGAGGGGGAGAGCAGCAGGGAAGCTATCTTGATCGGTGGCTTCATTT 120 consensus_5185#1 ------------------------------------------------------------ consensus_5185#0 GTCATCCGAGTGATTTTACGTACGTTTTCGTTTTTGTTTTAATTATAATCATATAAGAAA 180 consensus_5185#1 ------------------------------------------------------------ consensus_5185#0 CACACAAACAAACAAACAAACTAATCAATATATAGAGAGACTGGCTATAACATTACTTCA 240 consensus_5185#1 ------------------------------------------------------------ consensus_5185#0 TTAGCTTATTGTGTTAAGGTTTTTATCGTTTACTGCTGTACCCTTTTCTCATTCACTCAC 300 consensus_5185#1 --------------CAGAATCCCCGAGGTTT----TAGTACC-TTTTCTCATTCACTCAC 41 * * **** ***** ***************** consensus_5185#0 GTGTGTAATTCATCGGTTTGTGGTTCGTTGTGCTTGTTGTTGATGACTCGATTGACACCG 360 consensus_5185#1 GTGTGTAATTCATCGGTTTGTGGTTCGTTGTGCTTGTTGTTGATGACTCGATTGACACCG 101 ************************************************************ consensus_5185#0 GGCACAATAATATGGCTCTATATGTACAGTACCTTCCGTTGTTGGGGTTGGGCAGCTCAC 420 consensus_5185#1 GGCACAATAATATGGCTCTATATGTACAGTACCTACCGTTGTTGGGGTTGGGCAGCTCAC 161 ********************************** ************************* consensus_5185#0 CAGCGAGTTGATTCATTTAGTGTT-TCACTTTTCCTTACAAATAAAACAAAACTTTAGTG 479 consensus_5185#1 CAGCGAGTTGATTCATTTAGTGTTATCACTTTTCCTTACAAATAAAACAAAACTTTAGTG 221 ************************ *********************************** consensus_5185#0 TTAGCTGTTTCCCGGGGGGAACAGCAGTATTCGTAACTCTATGCATATGATAATATTCAC 539 consensus_5185#1 TTAGCTGTTTCCCGGGGGGAACAGCAGTATTCGTAACTCTATGCATATGATAATATTCAC 281 ************************************************************ consensus_5185#0 GAGATTAATCGGTAAAATGCGGTGGGTGTGTGGTTGTAGTACAACCGGCAACCCACACTC 599 consensus_5185#1 GAGATTAATCGGTAAAATGCGGTGG-TGTGTGGTTGTAGTACAACCGGCAACCCACACTC 340 ************************* ********************************** consensus_5185#0 ACACACTCAAACACAA-ACGCATACGGTCTAA---GGGAAAATGGGTGATATTGTGTATT 655 consensus_5185#1 ACACACTCAAACACAACACGCATACGAGTCANANAGGGAAANTGGTCGATATTGTGTATT 400 **************** ********* * ****** *** ************* consensus_5185#0 -GTATCT-ATTCGGAA--CAAATGTTCGTTTTATTTCTACAAACA--AATGCGTTTCTGT 709 consensus_5185#1 CGTATCTCATTCGGACACCACCTGTTCGTTT-ATNTCTACAAACACNAATGCGTANTCTG 459 ****** ******* ** ********* ** ********** ******* consensus_5185#0 TTTACTACTAATCGATTACCT-TATTTTGTGCTCACA-ATTTATATAAAACAACTAA--- 764 consensus_5185#1 TAAACTACTAATCGCTTACCTCTACTTTCTGCTCACACATTTACTATAAACAGCNAACGT 519 * *********** ****** ** *** ******** ***** ***** * ** consensus_5185#0 ---TATAAC-TACGTTTATCAAAACAGCAGAGCAGAGCGGCAGCGCATCATTAGCGTTCG 820 consensus_5185#1 ANATATAACATACGTTTACTCCAANAACAAGCAAAGCCAGCAGCGG--CACGCGCACTCA 577 ****** ******** ** * ** * * ****** ** ** ** consensus_5185#0 CGCCAGCCAGTTTAAAAGATGGTATACCTGATACGGGATTATAACAATAAACATAACACT 880 consensus_5185#1 TTACGAC--GTTNCGCGACCAGTCAGACCAAACNCGCATGGTCATACCCCGNATNACNCG 635 * * *** ** * * * ** * * * ** ** * consensus_5185#0 AGGAAAACACTGTAGAACAAAACACCAACCAAGCCAATAAATGCTCGATACTCGAGTGAT 940 consensus_5185#1 GGATATACACAGCA-AACTCACAACCATNTAAACACCTCAGGGAACACACCCCACCTGGT 694 * * **** * * *** * **** ** * * * * * * * ** * consensus_5185#0 ATAGGAGCAAGATAGAGAGAGAAGAAGGCAAGCAAACACAGCGTTAAAATAACTGGTTAA 1000 consensus_5185#1 AAGAAANCACAAAAGCGAAGCCACAACCCAAAGGCCCACAG---TCAAACA-TGGGCTG- 749 * * ** * ** ** * ** *** ***** * *** * ** * consensus_5185#0 TTTTCATATATTCGTGTTTTGTACTTTCGGCCACCTCTAGGAAGGGTTCCATTATATAGA 1060 consensus_5185#1 -CCGCATCAACTCNCAGTTGGNCNATCAGGNCAGCCCCACGNCAA-CCACACNCGNCAGT 807 *** * ** ** * * ** ** * * * * ** ** consensus_5185#0 TAATATATATACACATTTGTACGTGTACGCGTGTCAGTTCAG--AACGCTGTCCGTTCAT 1118 consensus_5185#1 CACNCANCGCCCNGCACAACACAACCCCGCGCGTCAACACAAGTAACACACTGCGCGGNC 867 * * ** **** **** ** *** * * ** consensus_5185#0 ACAATTAAACGACAAATTGCTTTTTTGACTAAATGCACACACACCCTACTACTAGCCATT 1178 consensus_5185#1 ACAACGCCCCCACNANCCCCC--------------------------------------- 888 **** * ** * * consensus_5185#0 ACAAGCTCGATTATCAATTGTATCGTAACCGACAAACAACAAACATTTAAAAGTGGGGCA 1238 consensus_5185#1 ------------------------------------------------------------ consensus_5185#0 GTTTTTGGTTGTTGTGTAGTTCCAACACTCTCGCCCCCCGAGCA 1282 consensus_5185#1 -------------------------------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||