These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5186#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 627 fasta sequence [GGCAAGCGGCATAAGCTTTACTTCTAACTTTTAGCAGCAAATACAGCCATTACCCTAACTAGCCTGTGCCTGAATGGCTGCACACGGGAACGCCGCTCAAATGCCGGCGACGGATGGGCACCCTGCTGAACGANGAGGAAGAGGACGAATTTTACAAAATTCCTACGGGGGTTCAGGAACGGCGGACGATGGGACTACGTTCAAAAGAAGTGACGACGAGGAAGATATCGTCGATTCCGACTTCAGTATTTGAGCGNAAAACCGATGAAGCCCCAATTTCCGACCGCGNGAGGAGGAAACCGGCGAAAGGGTACGGCACANACGGCCCGGAAACGGGTGGGGCACCGGGTGAACGAAAAGGGCCATACTTCCGGNGGGAGAACCCGGGCCCCCCCAAAGGAAAGTCNCNGTGGGCCCCCCCGCGCCACAAAGGCGGAANACGGCGGAAACCNCCCGACAAGCGGCGGCAAAAATGTGCCCCCGCATAACACGGAACCACGGATNCCGGAAACGTCGCCCTNGTGCAGCCCACGAACTGACCGCGGAGGTGCCCCCAAAAGGTTTATAAACCCGGCTCGCNACTTCCCGCAACCACTNCCCCGTGTAGTGCNCGCCANTAGACTTCNG] [+] EMBL AL695014 [GGCAAGCGGCATAAGCTTTACTTCTAACTTTTAGCAGCAAATACAGCCATTACCCTAACTAGCCTGTGCCTGAATGGCTGCACACGGGAACGCCGCTCAAATGCCGGCGACGGATGGGCACCCTGCTGAACGANGAGGAAGAGGACGAATTTTACAAAATTCCTACGGGGGTTCAGGAACGGCGGACGATGGGACTACGTTCAAAAGAAGTGACGACGAGGAAGATATCGTCGATTCCGACTTCAGTATTTGAGCGNAAAACCGATGAAGCCCCAATTTCCGACCGCGNGAGGAGGAAACCGGCGAAAGGGTACGGCACANACGGCCCGGAAACGGGTGGGGCACCGGGTGAACGAAAAGGGCCATACTTCCGGNGGGAGAACCCGGGCCCCCCCAAAGGAAAGTCNCNGTGGGCCCCCCCGCGCCACAAAGGCGGAANACGGCGGAAACCNCCCGACAAGCGGCGGCAAAAATGTGCCCCCGCATAACACGGAACCACGGATNCCGGAAACGTCGCCCTNGTGCAGCCCACGAACTGACCGCGGAGGTGCCCCCAAAAGGTTTATAAACCCGGCTCGCNACTTCCCGCAACCACTNCCCCGTGTAGTGCNCGCCANTAGACTTCNG] consensusID : consensus_5186#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 613 fasta sequence [AGAATCGCCCCGAGGGTTTACGGAA-CAGGCAAGCGGCAT-AGCTTTACTTCTAACTTTTAGCAGCAAATACAGCCATTACCCTAACTAGCCTGTGCCGAATGGCTGCCACACGGGAACGCCGCTCAAATGCCGGCCGACGGATGGCCACCCTGCTGAACGAGGAGGAAGAGGACGAATTTTACAAAACTTCCTACGGCGGCTTCAGCGAGACGGCGGACGATGGCGACTACGTTCAAAAGAATGACGACGAGGAAGATATCGTCGATTCCG-ACTTCAGTATTGACGAAAACGATGAGCCCATTTCCGACGCGGAGGAGGAACCGGCGAAAGGTAGCAAACGCCGGAAGGTGGGCACGGTGACGAAGGCATATCGGGAACCGGCCCCCAAGAAGCAGGCCCCCGCCAAAGCGAAGGAACCGAAGGCAAAAGCCGAACGACAGTCGACGCTGCGCAAGCGGCCCAAGTTTACCGTGATCGACTCGGGGCGCAAATCGTTCCGCAAGTCGACGGCGGCCAAAACGGCCGCCACGCAGAGCCGGCTCAAGCAGCGGTTCGAGGCGGAACGGAAGCGGACGCGAGTCATCCGAACGGAGGAGTACATCCCGACGCAGGA] [+] EMBL AL931717 [AGAATCGCCCCGAGGGTTTACGGAA CAGGCAAGCGGCAT AGCTTTACTTCTAACTTTTAGCAGCAAATACAGCCATTA CCTAACTAGCCTGTGCCGAATGGCTGCCACACGGGAACGCCGCTCAAATGCCGGCCGACGGATGGCCACCCTGCTGAACGAGGAGGAAGAGGACGAATTTTACAAAACTTCCTACGGCGGCTTCAGCGAGACGGCGGACGATGGCGACTACGTTCAAAAGAATGACGACGAGGAAGATATCGTCGATTCCG ACTTCAGTATTGACGAAAACGATGAGCCCATTTCCGACGCGGAGGAGGAACCGGCGAAAGGTAGCAA ] [+] EMBL AL932339 [ AATCGCCACGAGG NGAA CAGGCAAGCGGCAT AGCTTTACTTCTAACTTTTAGCAGCAAATACAGCCATTACCCTAACTAGCCTGTGCCGAATGGCTGCCACACGGGAACGCCGCTCAAATGCCGGCCGACGGATGGCCACCCTGCTGAACGAGGAGGAAGAGGACGAATTTTACAAAACTTCCTACGGCGGCTTCAGCGAGACGGCGGACGATGGCGACTACGTTCAAAAGAATGACGACGAGGAAGATATCGTCGATTCCGNACTTCAGTATTGACGAAAACGATGAGCCCATTTCCGACGCGGAGGAGGAACCGGCGAAAGGTAGCAAACGCCGGAAGGTGGGCACGGTGACGAAGGCATATCGGGAACCGGCCCCCAAGAAGCAGGCCCCCGCCAAAGCGAAGGAACCGAAGGCAAA ] [+] EMBL BM585961 [ ccggttGTTTACGGAACCAGGCAAGCGGCATAAGTTTTACTTCTAATTTTTAGCAGCAAATACAGCCATTACCCTAACTAGCCTGTGCCCAATGGCTGCCACACGGGAACGCCGCTCAAATGCCGGCCGACGGATGGCCACCCTGCTGAACGAGGAGGAAGAGGACGAATTTTACAAAACTTCCTACGGCGGCTTCAGCGAGACGGCGGACGATGGCGACTACGTTCAAAAGAATGATGACGAGGAAGATATCGTCGATTCCG ACTTCAGCATTGACGAAAACGATGAGCCCATTTCCGACGCGGAGGAGGAACCGGCGAAAGGTAGCAAACGCCGGAAGGTGGGCACGGTGACGAAGGCGTATCGGGAACCGGCCCCCAAGAAGCAGACCCCCGCCAAAGCGAAGGAACCGAAGGCAAAAGCCGAACGACAGTCGACGCTGCGCAAGCGGCCCAAGTTTACCGTGATCGACTCGGGGCGCAAATCGTTCCGCAAGTCGACGGCGGCCAAAACGGCCGCCACGCAGAGCCGGCTCAAGCAGCGGTTCGAGGCGGAACGGAAGCGGACGCGAGTCATCCGAACGGAGGAGTACATCCCGACGCAGGA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_5186#0 ---------------------------GGCAAGCGGCATAAGCTTTACTTCTAACTTTTA 33 consensus_5186#1 AGAATCGCCCCGAGGGTTTACGGAACAGGCAAGCGGCATA-GCTTTACTTCTAACTTTTA 59 ************* ******************* consensus_5186#0 GCAGCAAATACAGCCATTACCCTAACTAGCCTGTGCCTGAATGGCTGC-ACACGGGAACG 92 consensus_5186#1 GCAGCAAATACAGCCATTACCCTAACTAGCCTGTGCC-GAATGGCTGCCACACGGGAACG 118 ************************************* ********** *********** consensus_5186#0 CCGCTCAAATGCCGGC-GACGGATGGGCACCCTGCTGAACGANGAGGAAGAGGACGAATT 151 consensus_5186#1 CCGCTCAAATGCCGGCCGACGGATGGCCACCCTGCTGAACGAGGAGGAAGAGGACGAATT 178 **************** ********* *************** ***************** consensus_5186#0 TTACAAAA-TTCCTACGGGGG-TTCAG--GAACGGCGGACGATGG-GACTACGTTCAAAA 206 consensus_5186#1 TTACAAAACTTCCTACGGCGGCTTCAGCGAGACGGCGGACGATGGCGACTACGTTCAAAA 238 ******** ********* ** ***** ************** ************** consensus_5186#0 GAAGTGACGACGAGGAAGATATCGTCGATTCCGACTTCAGTATTTGAGCGNAAAACCGAT 266 consensus_5186#1 GAA-TGACGACGAGGAAGATATCGTCGATTCCGACTTCAGTATT--GACGAAAA--CGAT 293 *** **************************************** ** *** **** consensus_5186#0 GAAGCCCCAATTTCCGACCGCGNGAGGAGGAAACCGGCGAAAGGGTACGGCACANACGGC 326 consensus_5186#1 GAG---CCCATTTCCGAC---GCGGAGGAGGAACCGGCGAAAGG---TAGCAAAC---GC 341 ** ** ********* * * * * ************* *** * ** consensus_5186#0 CCGGAAACGGGTGGGGCACCGGGTGAACGAAAAGGGCCATACTTCCGGNGGGAGAACCCG 386 consensus_5186#1 CGGAAGGTGGGCACGGTGACGAAGGCATATCGGGAACCGGCCCCC------AAGAAGCAG 395 * * * *** ** ** * * * ** * * **** * * consensus_5186#0 GGCCCCCCCAAAGGAAAGTCNCNGTGGGCCCCCCCGCGCCACAAAGGCGGAANACGGCGG 446 consensus_5186#1 GCCCCCGCCAAAGCGAAGGAACCGAAGGCA------------AAAGCCGAACGACAGTCG 443 * **** ****** *** * * *** **** ** * ** * * consensus_5186#0 AAACCNCCCGACAAGCGGCGGCAAAAATGTGCCCCCGCATAACACGGAACCACGGATNCC 506 consensus_5186#1 ACGCTGCGCAA------GCGGCCCAAGTTTACCGTGAT-CGACTCGGGGCGCAAATCGTT 496 * * * * * ***** ** * * ** ** *** * consensus_5186#0 GGAAACGTCGCCCTNGTGCAGCCCACGAACTGACCGCGGAGGTGCCCCCAAAAGGTTTAT 566 consensus_5186#1 CCGCAAGTCGACGGCGGCCAAA--ACGGCCGCCACGCAGAGCCGGCTCAAGCAGCGGTTC 554 * **** * * ** *** * *** *** * * * * ** * consensus_5186#0 AAACCCGGCTCGCNACTTCCCGCAACCA-CTNCCCCGTGTAGTGCNCGCCANTAGACTTC 625 consensus_5186#1 GAGGCGGAACGGAAGCGGACGCGAGTCATCCGAACGGAGGAGTACATCCCGACGCAGGA- 613 * * * * * * * ** * * * * *** * ** * consensus_5186#0 NG 627 consensus_5186#1 -- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||