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Anopheles gambiae
cluster # 5191 cluster # 5191       Sequences # 4       consensus # 3


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_5191#0 length = 973 sequences # 1  
consensus_5191#1 length = 847 sequences # 2  
consensus_5191#2 length = 360 sequences # 1  

consensusID : consensus_5191#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 973
fasta sequence
                              [GGTTATTCTCTCTCTCTGCGAGTCCCATACANTGTATACGTTAATGTATAACCAAGCATTAAACGGCNGTGCGACGTACGGTGTCGTGTTATGGTACGGNATACCACCAGCAGCAGCAACAGTACTACTATACCAACAACAGCCAGCCAAGGCACAACAGNGCGCANAAACAACCAGGCCAAGATTGGATNCTGCCTGGGTATTCCATTGTGTGCCTNACTTCATCCCNGTGCGGAAAGGCCTGCCCGCCAGATGGTATCCTAACAAACACCCATTAACCCNCTTAACTGTGAGCCTAGGGTGGAACCGACACATGACTGCCAAGACACGCGCACAGNATTATGCCTACCCAACACAGNATGCNTANAACATGGCAACNANTCTTTGGGGGACCGTAACTACANCAAGGCGTNATAAACCACAACACCGGGGAAGACCNCTATATATACANACCTACAGGACATAGGGNACACAGCCCCNAGGANAAAGTGGAAGACNCAGGACAAGCATCAGGACGACCCAANAACACANNGNAAACCCAACNATGGCACGTACNCACAGAGGGGCGCAAGCACAACAATTANCGAAAAANANACAAGAAAGCNAACNCAACAGCCGGAGNACGCCGGNAANACACCCCCAACGCCAACAGAAACAACAAACANGGAGAACAACCCAACACAACAGAAAAGAACAGAACNNGAGGNNCGACCACACCAACNAAAAAACACAAAAGAACGAGCAAGCCCCACACCACACGCACCAACNGNANAAAGCACCNACAANAGCANCCGCACCGGNCAACACCCGAGGTNAGCANAAGACAACGCCCCACAGCGGAGCACCCACAAGNNCAAAAAAGANAACAAGGNAANAACCCCACGGAGGCANGCNAGCCAAGAGAACGCCANCAGCGACAANCAGCNNGCCCNAAAAAAANCAAAGCAAACAGCACACGCCANCGGCGAANANA]

[+] EMBL AL695144             [GGTTATTCTCTCTCTCTGCGAGTCCCATACANTGTATACGTTAATGTATAACCAAGCATTAAACGGCNGTGCGACGTACGGTGTCGTGTTATGGTACGGNATACCACCAGCAGCAGCAACAGTACTACTATACCAACAACAGCCAGCCAAGGCACAACAGNGCGCANAAACAACCAGGCCAAGATTGGATNCTGCCTGGGTATTCCATTGTGTGCCTNACTTCATCCCNGTGCGGAAAGGCCTGCCCGCCAGATGGTATCCTAACAAACACCCATTAACCCNCTTAACTGTGAGCCTAGGGTGGAACCGACACATGACTGCCAAGACACGCGCACAGNATTATGCCTACCCAACACAGNATGCNTANAACATGGCAACNANTCTTTGGGGGACCGTAACTACANCAAGGCGTNATAAACCACAACACCGGGGAAGACCNCTATATATACANACCTACAGGACATAGGGNACACAGCCCCNAGGANAAAGTGGAAGACNCAGGACAAGCATCAGGACGACCCAANAACACANNGNAAACCCAACNATGGCACGTACNCACAGAGGGGCGCAAGCACAACAATTANCGAAAAANANACAAGAAAGCNAACNCAACAGCCGGAGNACGCCGGNAANACACCCCCAACGCCAACAGAAACAACAAACANGGAGAACAACCCAACACAACAGAAAAGAACAGAACNNGAGGNNCGACCACACCAACNAAAAAACACAAAAGAACGAGCAAGCCCCACACCACACGCACCAACNGNANAAAGCACCNACAANAGCANCCGCACCGGNCAACACCCGAGGTNAGCANAAGACAACGCCCCACAGCGGAGCACCCACAAGNNCAAAAAAGANAACAAGGNAANAACCCCACGGAGGCANGCNAGCCAAGAGAACGCCANCAGCGACAANCAGCNNGCCCNAAAAAAANCAAAGCAAACAGCACACGCCANCGGCGAANANA]


>consensus_5191#0 GGTTATTCTCTCTCTCTGCGAGTCCCATACANTGTATACGTTAATGTATAACCAAGCATT AAACGGCNGTGCGACGTACGGTGTCGTGTTATGGTACGGNATACCACCAGCAGCAGCAAC AGTACTACTATACCAACAACAGCCAGCCAAGGCACAACAGNGCGCANAAACAACCAGGCC AAGATTGGATNCTGCCTGGGTATTCCATTGTGTGCCTNACTTCATCCCNGTGCGGAAAGG CCTGCCCGCCAGATGGTATCCTAACAAACACCCATTAACCCNCTTAACTGTGAGCCTAGG GTGGAACCGACACATGACTGCCAAGACACGCGCACAGNATTATGCCTACCCAACACAGNA TGCNTANAACATGGCAACNANTCTTTGGGGGACCGTAACTACANCAAGGCGTNATAAACC ACAACACCGGGGAAGACCNCTATATATACANACCTACAGGACATAGGGNACACAGCCCCN AGGANAAAGTGGAAGACNCAGGACAAGCATCAGGACGACCCAANAACACANNGNAAACCC AACNATGGCACGTACNCACAGAGGGGCGCAAGCACAACAATTANCGAAAAANANACAAGA AAGCNAACNCAACAGCCGGAGNACGCCGGNAANACACCCCCAACGCCAACAGAAACAACA AACANGGAGAACAACCCAACACAACAGAAAAGAACAGAACNNGAGGNNCGACCACACCAA CNAAAAAACACAAAAGAACGAGCAAGCCCCACACCACACGCACCAACNGNANAAAGCACC NACAANAGCANCCGCACCGGNCAACACCCGAGGTNAGCANAAGACAACGCCCCACAGCGG AGCACCCACAAGNNCAAAAAAGANAACAAGGNAANAACCCCACGGAGGCANGCNAGCCAA GAGAACGCCANCAGCGACAANCAGCNNGCCCNAAAAAAANCAAAGCAAACAGCACACGCC ANCGGCGAANANA



consensusID : consensus_5191#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 847
fasta sequence
                              [ACAACAAGTCACCATTTAGCAGCGTTTTATCCTGTGATATTCGAGCGAATTACTTCTTTCTCTCTCTCTGCGAGTCATATACAAAGTATACGATAATGTATAACCAAGCATTAAACGGCAGTGCGACGTACGGTGTCGGTTATGGTACGGAATACCACCAGCAGCAGCAACAGTACTACTATCAACAACAGCAGCAACAGGCACAACAGGCGCAAAAACAACAGCAAATGATCGCCGGTATCATGGGCTACTATCCCGCGGAAGCCGCCGCAATGTTCTACAACCCATACCCCTACGGGCACGGACCGACGGCGCAGCAGCAGTTTGCTCAACAGCAGCAACAGGCACATCTGGACTATCAGCTTACACCGGCCCTTTATCTGCTGAACCAGCAGGCCGAGCTGCTCCAAAAGTCACTGATGAAGGGACACTCGAAGAAGTCCCCGGCCGAAGCTAGCAAGCCACAGCGAAAACAGCGCGGCCCGTACAAGCGGCGCACCAACAAGACCCTCTCGCCGACCGTCTCACCCGCCCCGGAGTTTGCGATGGATGCGGCGGAGCGCCTATCATCGTCCGATCTGTCCAGCAGCAACAGCCACAACAACCGATCGGCCGGCTCTATTCACGTCGATTTGACCAGCAACAACACCGGGTACTAGCGTGGATAGTACAAGCTTCCAGGAGCTGCAACAAGAACAGCGGAAGCGTAAAAGTGACTCCTTCCTCGAGATCGATCAGCAGACCAACAAGCACAGCCGAACAATGCTCAGCCAGAAGCAGTCCATCTTCCGCAATGTGGCCCTGATGGCCGTCAGCTCCTGCACCCACACTGATCAGCGTGTACCGT]

[+] EMBL BX628092             [ACAACAAGTCACCATTTAGCAGCGTTTTATCCTGTGATATTCGAGCGAATTACTTCTTTCTCTCTCTCTGCGAGTCATATACAAAGTATACGATAATGTATAACCAAGCATTAAACGGCAGTGCGACGTACGGTGTCGGTTATGGTACGGAATACCACCAGCAGCAGCAACAGTACTACTATCAACAACAGCAGCAACAGGCACAACAGGCGCAAAAACAACAGCAAATGATCGCCGGTATCATGGGCTACTATCCCGCGGAAGCCGCCGCAATGTTCTACAACCCATACCCCTACGGGCACGGACCGACGGCGCAGCAGCAGTTTGCTCAACAGCAGCAACAGGCACATCTGGACTATCAGCTTACACCGGCCCTTTATCTGCTGAACCAGCAGGCCGAGCTGCTCCAAAAGTCACTGATGAAGGGACACTCGAAGAAGTCCCCGGCCGAAGCTAGCAAGCCACAGCGAAAACAGCGCGGCCCGTACAAGCGGCGCACCAACAAGACCCTCTCGCCGACCGTCTCACCCGCCCCGGAGTTTGCGATGGATGCGGCGGAGCGCCTATCAT                                                                                                                                                                                                                                                                                     ]
[+] EMBL BM602219             [                                                                                                                                                         ccgACCAGCAGCAGCAACAGTACTACTATCAACAACAGCAGCAACAGGCGCAACAGGCGCAAAAACAACAGCAAATGATCGCCGGTATCATGGGCTACTATCCCGCGGAAGCCGCCGCAATGTTCTACAACCCATACCCCTACGGACACGGACCGACGGCGCAGCAGCAGTTTGCTCAACAGCAGCACCAGGCACATCTGGACTATCAGCTTACACCGGCCCTTTATCTGCTGAACCAGCAGGCCGAGCTGCTCCAAAAGTCACTAATGAAGGGACACTCGAAGAAGTCCCCGGCCGAAGCTAACAAGCCACAGCGAAAACAGCGCGGCCCGTACAAGCGGCGCACCAACAAGACCCTCTCGCCGACCGTCTCACCCGCCCCGGAGTTTGCGATGGATGCGGCGGAGCGCCTATCATCGTCCGATCTGTCCAGCAGCAACAGCCACAACAACCGATCGGCCGGCTCTATTCACGTCGATTTGACCAGCAACAACACCGGGTACTAGCGTGGATAGTACAAGCTTCCAGGAGCTGCAACAAGAACAGCGGAAGCGTAAAAGTGACTCCTTCCTCGAGATCGATCAGCAGACCAACAAGCACAGCCGAACAATGCTCAGCCAGAAGCAGTCCATCTTCCGCAATGTGGCCCTGATGGCCGTCAGCTCCTGCACCCACACTGATCAGCGTGTACCGT]


>consensus_5191#1 ACAACAAGTCACCATTTAGCAGCGTTTTATCCTGTGATATTCGAGCGAATTACTTCTTTC TCTCTCTCTGCGAGTCATATACAAAGTATACGATAATGTATAACCAAGCATTAAACGGCA GTGCGACGTACGGTGTCGGTTATGGTACGGAATACCACCAGCAGCAGCAACAGTACTACT ATCAACAACAGCAGCAACAGGCACAACAGGCGCAAAAACAACAGCAAATGATCGCCGGTA TCATGGGCTACTATCCCGCGGAAGCCGCCGCAATGTTCTACAACCCATACCCCTACGGGC ACGGACCGACGGCGCAGCAGCAGTTTGCTCAACAGCAGCAACAGGCACATCTGGACTATC AGCTTACACCGGCCCTTTATCTGCTGAACCAGCAGGCCGAGCTGCTCCAAAAGTCACTGA TGAAGGGACACTCGAAGAAGTCCCCGGCCGAAGCTAGCAAGCCACAGCGAAAACAGCGCG GCCCGTACAAGCGGCGCACCAACAAGACCCTCTCGCCGACCGTCTCACCCGCCCCGGAGT TTGCGATGGATGCGGCGGAGCGCCTATCATCGTCCGATCTGTCCAGCAGCAACAGCCACA ACAACCGATCGGCCGGCTCTATTCACGTCGATTTGACCAGCAACAACACCGGGTACTAGC GTGGATAGTACAAGCTTCCAGGAGCTGCAACAAGAACAGCGGAAGCGTAAAAGTGACTCC TTCCTCGAGATCGATCAGCAGACCAACAAGCACAGCCGAACAATGCTCAGCCAGAAGCAG TCCATCTTCCGCAATGTGGCCCTGATGGCCGTCAGCTCCTGCACCCACACTGATCAGCGT GTACCGT



consensusID : consensus_5191#2
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 360
fasta sequence
                              [AGAATCGCCCCGAGGNGATCATTCGACGATACAACAAGGTCACCATTTAGCAGCGTTTTATCCTGTGATATTCGAGCGAATTCCTTTTTTTCTCTCTCTCTGCGAGTCATATACAAAGTATACGATAATGTATAACCAAGCATTAAACGGCAGTGCGAACGGTACGGTGGTCGGGTTATGGTACGGAATACCACCAGCAGCAGNCAAACAGGTACTACTATCAACAACAGCAGGCCAACAGGCGCAACAAAGGCGCCAAAAACAAACCCAGCAAATGAATTCGCCGGTATTCCATGGGCTACCTTAATCCCGCGGAAGCCCGCCGCAATGTTCTACAACCCAATACCCCCCTACGGACAC]

[+] EMBL AL932512             [AGAATCGCCCCGAGGNGATCATTCGACGATACAACAAGGTCACCATTTAGCAGCGTTTTATCCTGTGATATTCGAGCGAATTCCTTTTTTTCTCTCTCTCTGCGAGTCATATACAAAGTATACGATAATGTATAACCAAGCATTAAACGGCAGTGCGAACGGTACGGTGGTCGGGTTATGGTACGGAATACCACCAGCAGCAGNCAAACAGGTACTACTATCAACAACAGCAGGCCAACAGGCGCAACAAAGGCGCCAAAAACAAACCCAGCAAATGAATTCGCCGGTATTCCATGGGCTACCTTAATCCCGCGGAAGCCCGCCGCAATGTTCTACAACCCAATACCCCCCTACGGACAC]


>consensus_5191#2 AGAATCGCCCCGAGGNGATCATTCGACGATACAACAAGGTCACCATTTAGCAGCGTTTTA TCCTGTGATATTCGAGCGAATTCCTTTTTTTCTCTCTCTCTGCGAGTCATATACAAAGTA TACGATAATGTATAACCAAGCATTAAACGGCAGTGCGAACGGTACGGTGGTCGGGTTATG GTACGGAATACCACCAGCAGCAGNCAAACAGGTACTACTATCAACAACAGCAGGCCAACA GGCGCAACAAAGGCGCCAAAAACAAACCCAGCAAATGAATTCGCCGGTATTCCATGGGCT ACCTTAATCCCGCGGAAGCCCGCCGCAATGTTCTACAACCCAATACCCCCCTACGGACAC



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_5191#1      ------------------------------ACAACAAG-TCACCATTTAGCAGCGTTTTA 29
consensus_5191#2      AGAATCGCCCCGAGGNGATCATTCGACGATACAACAAGGTCACCATTTAGCAGCGTTTTA 60
consensus_5191#0      ------------------------------------------------------------
                                                                                  

consensus_5191#1      TCCTGTGATATTCGAGCGAATTACTTCTTT-CTCTCTCTCTGCGAGTCATATACAAAGTA 88
consensus_5191#2      TCCTGTGATATTCGAGCGAATTCCTTTTTTTCTCTCTCTCTGCGAGTCATATACAAAGTA 120
consensus_5191#0      ------------------------GGTTATTCTCTCTCTCTGCGAGTCCCATACANTGTA 36
                                                 * * *****************  *****  ***

consensus_5191#1      TACGATAATGTATAACCAAGCATTAAACGGCAGTGCGAC--GTACGGTGTC--GGTTATG 144
consensus_5191#2      TACGATAATGTATAACCAAGCATTAAACGGCAGTGCGAACGGTACGGTGGTCGGGTTATG 180
consensus_5191#0      TACGTTAATGTATAACCAAGCATTAAACGGCNGTGCGAC--GTACGGTGTC-GTGTTATG 93
                      **** ************************** ******   ********     ******

consensus_5191#1      GTACGGAATACCACCAGCAGCAGC--AACAG-TACTACTAT--CAACAACAGCAG--CAA 197
consensus_5191#2      GTACGGAATACCACCAGCAGCAGNCAAACAGGTACTACTAT--CAACAACAGCAGGCCAA 238
consensus_5191#0      GTACGGNATACCACCAGCAGCAGC--AACAG-TACTACTATACCAACAACAGCCAGCCAA 150
                      ****** ****************   ***** *********  **********    ***

consensus_5191#1      CAGGCACAACA--G-GCGC-AAAAACAA---CAGCAAATGA--TCGCC--GGTAT--CAT 244
consensus_5191#2      CAGGCGCAACAAAG-GCGCCAAAAACAAACCCAGCAAATGAATTCGCC--GGTATTCCAT 295
consensus_5191#0      --GGCACAACAGNGCGCANAAACAACCAGGCCAAGATTGGATNCTGCCTGGGTATTCCAT 208
                        *** *****  * **   ** *** *   **  *   **    ***  *****  ***

consensus_5191#1      GGG----CTACT---ATCCCG---CGGAA------GCC-GCCGCA--ATGTTCTA-CAA- 283
consensus_5191#2      GGG----CTACCTTAATCCCG---CGGAA------GCCCGCCGCA--ATGTTCTA-CAA- 338
consensus_5191#0      TGTGTGCCTNACTTCATCCCNGTGCGGAAAGGCCTGCCCGCCAGATGGTATCCTAACAAA 268
                       *     **      *****    *****      *** ***  *   * * *** *** 

consensus_5191#1      --CCCA---TACCCCTACGGGCACGGACCGACGGCGCAGCAGCAGTTTGCTCAACAGCAG 338
consensus_5191#2      --CCCAATACCCCCCTACGGACAC------------------------------------ 360
consensus_5191#0      CACCCATT-AACCCNCTTAACTGTGAGCCTAGGGTGGAACCGACACATGACTGCCA--AG 325
                        ****     ***                                              

consensus_5191#1      CAACAGGCACATCTGGACTATCAGCTTACACCGGCCCTTTATCTGCTG--AACCAGC--- 393
consensus_5191#2      ------------------------------------------------------------
consensus_5191#0      ACACGCGCACAGNATTATGCCTACCCAACACAGNATGCNTANAACATGGCAACNANTCTT 385
                                                                                  

consensus_5191#1      ----AGGCCG-AGCTGCTCCAAAA-GTCACTGATGAAGGGACACTCGAAGAAGTCCCCGG 447
consensus_5191#2      ------------------------------------------------------------
consensus_5191#0      TGGGGGACCGTAACTACANCAAGGCGTNATAAACCACAACACCGGGGAAGACCNCTATAT 445
                                                                                  

consensus_5191#1      CCG-AAGCTAGCAAGCCACAGCGAAAACAGCGCGGCCCGTACAAGCGGCGCACCAACAAG 506
consensus_5191#2      ------------------------------------------------------------
consensus_5191#0      ATACANACCTACAGGACATAGGGNACACAGCCCCNAGGANAAAGTGGAAGACNCAGGACA 505
                                                                                  

consensus_5191#1      ACCCTCTCGCCGACCGTCTCACCCGCCCCGGAGTTTGCGATGG-------ATGCGGCGGA 559
consensus_5191#2      ------------------------------------------------------------
consensus_5191#0      AGCATCAGGACGACCCAANAACACANNGNAAACCCAACNATGGCACGTACNCACAGAGGG 565
                                                                                  

consensus_5191#1      GCGC-----CTATCATCGTCCGATCTGTCCAGCAGCAACAGCCACAACAACCGATCG--G 612
consensus_5191#2      ------------------------------------------------------------
consensus_5191#0      GCGCAAGCACAACAATTANCGAAAAANANACAAGAAAGCNAACNCAACAGCCGGAGNACG 625
                                                                                  

consensus_5191#1      CCGGCTCTATTC-----ACGTCGATTTGACCAGCAACAACACCGGGTA--CTAGCGT--- 662
consensus_5191#2      ------------------------------------------------------------
consensus_5191#0      CCGGNAANACACCCCCAACGCCAACAGAAACAACAAACANGGAGAACAACCCAACACAAC 685
                                                                                  

consensus_5191#1      -GGATAGTACAAGCTTCCAGGAGCTGCAACAAGAACAGCGGAA-GCGTAAAAGTGA---- 716
consensus_5191#2      ------------------------------------------------------------
consensus_5191#0      AGAAAAGAACAGAACNNGAGGNNCGACCACACCAACNAAAAAACACAAAAGAACGAGCAA 745
                                                                                  

consensus_5191#1      --CTCCTTCCTCGAGATCGATCAGCAGA-----CCAACAAGCACAGCCG-----AACAAT 764
consensus_5191#2      ------------------------------------------------------------
consensus_5191#0      GCCCCACACCACACGCACCAACNGNANAAAGCACCNACAANAGCANCCGCACCGGNCAAC 805
                                                                                  

consensus_5191#1      GCTCA--GCCAGAAGCAGTCCATCTTCCGCAATGTGGCCCTGATGGCCGT--------CA 814
consensus_5191#2      ------------------------------------------------------------
consensus_5191#0      ACCCGAGGTNAGCANAAGACAACGCCCCACAGCGGAGCACCCACAAGNNCAAAAAAGANA 865
                                                                                  

consensus_5191#1      GCTC--CTGCACCCACACTGATCAGCGTGTACCGT------------------------- 847
consensus_5191#2      ------------------------------------------------------------
consensus_5191#0      ACAAGGNAANAACCCCACGGAGGCANGCNAGCCAAGAGAACGCCANCAGCGACAANCAGC 925
                                                                                  

consensus_5191#1      ------------------------------------------------
consensus_5191#2      ------------------------------------------------
consensus_5191#0      NNGCCCNAAAAAAANCAAAGCAAACAGCACACGCCANCGGCGAANANA 973
                                                                      




Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner    (hubert.wassner@noos.fr)