These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5191#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 973 fasta sequence [GGTTATTCTCTCTCTCTGCGAGTCCCATACANTGTATACGTTAATGTATAACCAAGCATTAAACGGCNGTGCGACGTACGGTGTCGTGTTATGGTACGGNATACCACCAGCAGCAGCAACAGTACTACTATACCAACAACAGCCAGCCAAGGCACAACAGNGCGCANAAACAACCAGGCCAAGATTGGATNCTGCCTGGGTATTCCATTGTGTGCCTNACTTCATCCCNGTGCGGAAAGGCCTGCCCGCCAGATGGTATCCTAACAAACACCCATTAACCCNCTTAACTGTGAGCCTAGGGTGGAACCGACACATGACTGCCAAGACACGCGCACAGNATTATGCCTACCCAACACAGNATGCNTANAACATGGCAACNANTCTTTGGGGGACCGTAACTACANCAAGGCGTNATAAACCACAACACCGGGGAAGACCNCTATATATACANACCTACAGGACATAGGGNACACAGCCCCNAGGANAAAGTGGAAGACNCAGGACAAGCATCAGGACGACCCAANAACACANNGNAAACCCAACNATGGCACGTACNCACAGAGGGGCGCAAGCACAACAATTANCGAAAAANANACAAGAAAGCNAACNCAACAGCCGGAGNACGCCGGNAANACACCCCCAACGCCAACAGAAACAACAAACANGGAGAACAACCCAACACAACAGAAAAGAACAGAACNNGAGGNNCGACCACACCAACNAAAAAACACAAAAGAACGAGCAAGCCCCACACCACACGCACCAACNGNANAAAGCACCNACAANAGCANCCGCACCGGNCAACACCCGAGGTNAGCANAAGACAACGCCCCACAGCGGAGCACCCACAAGNNCAAAAAAGANAACAAGGNAANAACCCCACGGAGGCANGCNAGCCAAGAGAACGCCANCAGCGACAANCAGCNNGCCCNAAAAAAANCAAAGCAAACAGCACACGCCANCGGCGAANANA] [+] EMBL AL695144 [GGTTATTCTCTCTCTCTGCGAGTCCCATACANTGTATACGTTAATGTATAACCAAGCATTAAACGGCNGTGCGACGTACGGTGTCGTGTTATGGTACGGNATACCACCAGCAGCAGCAACAGTACTACTATACCAACAACAGCCAGCCAAGGCACAACAGNGCGCANAAACAACCAGGCCAAGATTGGATNCTGCCTGGGTATTCCATTGTGTGCCTNACTTCATCCCNGTGCGGAAAGGCCTGCCCGCCAGATGGTATCCTAACAAACACCCATTAACCCNCTTAACTGTGAGCCTAGGGTGGAACCGACACATGACTGCCAAGACACGCGCACAGNATTATGCCTACCCAACACAGNATGCNTANAACATGGCAACNANTCTTTGGGGGACCGTAACTACANCAAGGCGTNATAAACCACAACACCGGGGAAGACCNCTATATATACANACCTACAGGACATAGGGNACACAGCCCCNAGGANAAAGTGGAAGACNCAGGACAAGCATCAGGACGACCCAANAACACANNGNAAACCCAACNATGGCACGTACNCACAGAGGGGCGCAAGCACAACAATTANCGAAAAANANACAAGAAAGCNAACNCAACAGCCGGAGNACGCCGGNAANACACCCCCAACGCCAACAGAAACAACAAACANGGAGAACAACCCAACACAACAGAAAAGAACAGAACNNGAGGNNCGACCACACCAACNAAAAAACACAAAAGAACGAGCAAGCCCCACACCACACGCACCAACNGNANAAAGCACCNACAANAGCANCCGCACCGGNCAACACCCGAGGTNAGCANAAGACAACGCCCCACAGCGGAGCACCCACAAGNNCAAAAAAGANAACAAGGNAANAACCCCACGGAGGCANGCNAGCCAAGAGAACGCCANCAGCGACAANCAGCNNGCCCNAAAAAAANCAAAGCAAACAGCACACGCCANCGGCGAANANA] consensusID : consensus_5191#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 847 fasta sequence [ACAACAAGTCACCATTTAGCAGCGTTTTATCCTGTGATATTCGAGCGAATTACTTCTTTCTCTCTCTCTGCGAGTCATATACAAAGTATACGATAATGTATAACCAAGCATTAAACGGCAGTGCGACGTACGGTGTCGGTTATGGTACGGAATACCACCAGCAGCAGCAACAGTACTACTATCAACAACAGCAGCAACAGGCACAACAGGCGCAAAAACAACAGCAAATGATCGCCGGTATCATGGGCTACTATCCCGCGGAAGCCGCCGCAATGTTCTACAACCCATACCCCTACGGGCACGGACCGACGGCGCAGCAGCAGTTTGCTCAACAGCAGCAACAGGCACATCTGGACTATCAGCTTACACCGGCCCTTTATCTGCTGAACCAGCAGGCCGAGCTGCTCCAAAAGTCACTGATGAAGGGACACTCGAAGAAGTCCCCGGCCGAAGCTAGCAAGCCACAGCGAAAACAGCGCGGCCCGTACAAGCGGCGCACCAACAAGACCCTCTCGCCGACCGTCTCACCCGCCCCGGAGTTTGCGATGGATGCGGCGGAGCGCCTATCATCGTCCGATCTGTCCAGCAGCAACAGCCACAACAACCGATCGGCCGGCTCTATTCACGTCGATTTGACCAGCAACAACACCGGGTACTAGCGTGGATAGTACAAGCTTCCAGGAGCTGCAACAAGAACAGCGGAAGCGTAAAAGTGACTCCTTCCTCGAGATCGATCAGCAGACCAACAAGCACAGCCGAACAATGCTCAGCCAGAAGCAGTCCATCTTCCGCAATGTGGCCCTGATGGCCGTCAGCTCCTGCACCCACACTGATCAGCGTGTACCGT] [+] EMBL BX628092 [ACAACAAGTCACCATTTAGCAGCGTTTTATCCTGTGATATTCGAGCGAATTACTTCTTTCTCTCTCTCTGCGAGTCATATACAAAGTATACGATAATGTATAACCAAGCATTAAACGGCAGTGCGACGTACGGTGTCGGTTATGGTACGGAATACCACCAGCAGCAGCAACAGTACTACTATCAACAACAGCAGCAACAGGCACAACAGGCGCAAAAACAACAGCAAATGATCGCCGGTATCATGGGCTACTATCCCGCGGAAGCCGCCGCAATGTTCTACAACCCATACCCCTACGGGCACGGACCGACGGCGCAGCAGCAGTTTGCTCAACAGCAGCAACAGGCACATCTGGACTATCAGCTTACACCGGCCCTTTATCTGCTGAACCAGCAGGCCGAGCTGCTCCAAAAGTCACTGATGAAGGGACACTCGAAGAAGTCCCCGGCCGAAGCTAGCAAGCCACAGCGAAAACAGCGCGGCCCGTACAAGCGGCGCACCAACAAGACCCTCTCGCCGACCGTCTCACCCGCCCCGGAGTTTGCGATGGATGCGGCGGAGCGCCTATCAT ] [+] EMBL BM602219 [ ccgACCAGCAGCAGCAACAGTACTACTATCAACAACAGCAGCAACAGGCGCAACAGGCGCAAAAACAACAGCAAATGATCGCCGGTATCATGGGCTACTATCCCGCGGAAGCCGCCGCAATGTTCTACAACCCATACCCCTACGGACACGGACCGACGGCGCAGCAGCAGTTTGCTCAACAGCAGCACCAGGCACATCTGGACTATCAGCTTACACCGGCCCTTTATCTGCTGAACCAGCAGGCCGAGCTGCTCCAAAAGTCACTAATGAAGGGACACTCGAAGAAGTCCCCGGCCGAAGCTAACAAGCCACAGCGAAAACAGCGCGGCCCGTACAAGCGGCGCACCAACAAGACCCTCTCGCCGACCGTCTCACCCGCCCCGGAGTTTGCGATGGATGCGGCGGAGCGCCTATCATCGTCCGATCTGTCCAGCAGCAACAGCCACAACAACCGATCGGCCGGCTCTATTCACGTCGATTTGACCAGCAACAACACCGGGTACTAGCGTGGATAGTACAAGCTTCCAGGAGCTGCAACAAGAACAGCGGAAGCGTAAAAGTGACTCCTTCCTCGAGATCGATCAGCAGACCAACAAGCACAGCCGAACAATGCTCAGCCAGAAGCAGTCCATCTTCCGCAATGTGGCCCTGATGGCCGTCAGCTCCTGCACCCACACTGATCAGCGTGTACCGT] consensusID : consensus_5191#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 360 fasta sequence [AGAATCGCCCCGAGGNGATCATTCGACGATACAACAAGGTCACCATTTAGCAGCGTTTTATCCTGTGATATTCGAGCGAATTCCTTTTTTTCTCTCTCTCTGCGAGTCATATACAAAGTATACGATAATGTATAACCAAGCATTAAACGGCAGTGCGAACGGTACGGTGGTCGGGTTATGGTACGGAATACCACCAGCAGCAGNCAAACAGGTACTACTATCAACAACAGCAGGCCAACAGGCGCAACAAAGGCGCCAAAAACAAACCCAGCAAATGAATTCGCCGGTATTCCATGGGCTACCTTAATCCCGCGGAAGCCCGCCGCAATGTTCTACAACCCAATACCCCCCTACGGACAC] [+] EMBL AL932512 [AGAATCGCCCCGAGGNGATCATTCGACGATACAACAAGGTCACCATTTAGCAGCGTTTTATCCTGTGATATTCGAGCGAATTCCTTTTTTTCTCTCTCTCTGCGAGTCATATACAAAGTATACGATAATGTATAACCAAGCATTAAACGGCAGTGCGAACGGTACGGTGGTCGGGTTATGGTACGGAATACCACCAGCAGCAGNCAAACAGGTACTACTATCAACAACAGCAGGCCAACAGGCGCAACAAAGGCGCCAAAAACAAACCCAGCAAATGAATTCGCCGGTATTCCATGGGCTACCTTAATCCCGCGGAAGCCCGCCGCAATGTTCTACAACCCAATACCCCCCTACGGACAC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_5191#1 ------------------------------ACAACAAG-TCACCATTTAGCAGCGTTTTA 29 consensus_5191#2 AGAATCGCCCCGAGGNGATCATTCGACGATACAACAAGGTCACCATTTAGCAGCGTTTTA 60 consensus_5191#0 ------------------------------------------------------------ consensus_5191#1 TCCTGTGATATTCGAGCGAATTACTTCTTT-CTCTCTCTCTGCGAGTCATATACAAAGTA 88 consensus_5191#2 TCCTGTGATATTCGAGCGAATTCCTTTTTTTCTCTCTCTCTGCGAGTCATATACAAAGTA 120 consensus_5191#0 ------------------------GGTTATTCTCTCTCTCTGCGAGTCCCATACANTGTA 36 * * ***************** ***** *** consensus_5191#1 TACGATAATGTATAACCAAGCATTAAACGGCAGTGCGAC--GTACGGTGTC--GGTTATG 144 consensus_5191#2 TACGATAATGTATAACCAAGCATTAAACGGCAGTGCGAACGGTACGGTGGTCGGGTTATG 180 consensus_5191#0 TACGTTAATGTATAACCAAGCATTAAACGGCNGTGCGAC--GTACGGTGTC-GTGTTATG 93 **** ************************** ****** ******** ****** consensus_5191#1 GTACGGAATACCACCAGCAGCAGC--AACAG-TACTACTAT--CAACAACAGCAG--CAA 197 consensus_5191#2 GTACGGAATACCACCAGCAGCAGNCAAACAGGTACTACTAT--CAACAACAGCAGGCCAA 238 consensus_5191#0 GTACGGNATACCACCAGCAGCAGC--AACAG-TACTACTATACCAACAACAGCCAGCCAA 150 ****** **************** ***** ********* ********** *** consensus_5191#1 CAGGCACAACA--G-GCGC-AAAAACAA---CAGCAAATGA--TCGCC--GGTAT--CAT 244 consensus_5191#2 CAGGCGCAACAAAG-GCGCCAAAAACAAACCCAGCAAATGAATTCGCC--GGTATTCCAT 295 consensus_5191#0 --GGCACAACAGNGCGCANAAACAACCAGGCCAAGATTGGATNCTGCCTGGGTATTCCAT 208 *** ***** * ** ** *** * ** * ** *** ***** *** consensus_5191#1 GGG----CTACT---ATCCCG---CGGAA------GCC-GCCGCA--ATGTTCTA-CAA- 283 consensus_5191#2 GGG----CTACCTTAATCCCG---CGGAA------GCCCGCCGCA--ATGTTCTA-CAA- 338 consensus_5191#0 TGTGTGCCTNACTTCATCCCNGTGCGGAAAGGCCTGCCCGCCAGATGGTATCCTAACAAA 268 * ** ***** ***** *** *** * * * *** *** consensus_5191#1 --CCCA---TACCCCTACGGGCACGGACCGACGGCGCAGCAGCAGTTTGCTCAACAGCAG 338 consensus_5191#2 --CCCAATACCCCCCTACGGACAC------------------------------------ 360 consensus_5191#0 CACCCATT-AACCCNCTTAACTGTGAGCCTAGGGTGGAACCGACACATGACTGCCA--AG 325 **** *** consensus_5191#1 CAACAGGCACATCTGGACTATCAGCTTACACCGGCCCTTTATCTGCTG--AACCAGC--- 393 consensus_5191#2 ------------------------------------------------------------ consensus_5191#0 ACACGCGCACAGNATTATGCCTACCCAACACAGNATGCNTANAACATGGCAACNANTCTT 385 consensus_5191#1 ----AGGCCG-AGCTGCTCCAAAA-GTCACTGATGAAGGGACACTCGAAGAAGTCCCCGG 447 consensus_5191#2 ------------------------------------------------------------ consensus_5191#0 TGGGGGACCGTAACTACANCAAGGCGTNATAAACCACAACACCGGGGAAGACCNCTATAT 445 consensus_5191#1 CCG-AAGCTAGCAAGCCACAGCGAAAACAGCGCGGCCCGTACAAGCGGCGCACCAACAAG 506 consensus_5191#2 ------------------------------------------------------------ consensus_5191#0 ATACANACCTACAGGACATAGGGNACACAGCCCCNAGGANAAAGTGGAAGACNCAGGACA 505 consensus_5191#1 ACCCTCTCGCCGACCGTCTCACCCGCCCCGGAGTTTGCGATGG-------ATGCGGCGGA 559 consensus_5191#2 ------------------------------------------------------------ consensus_5191#0 AGCATCAGGACGACCCAANAACACANNGNAAACCCAACNATGGCACGTACNCACAGAGGG 565 consensus_5191#1 GCGC-----CTATCATCGTCCGATCTGTCCAGCAGCAACAGCCACAACAACCGATCG--G 612 consensus_5191#2 ------------------------------------------------------------ consensus_5191#0 GCGCAAGCACAACAATTANCGAAAAANANACAAGAAAGCNAACNCAACAGCCGGAGNACG 625 consensus_5191#1 CCGGCTCTATTC-----ACGTCGATTTGACCAGCAACAACACCGGGTA--CTAGCGT--- 662 consensus_5191#2 ------------------------------------------------------------ consensus_5191#0 CCGGNAANACACCCCCAACGCCAACAGAAACAACAAACANGGAGAACAACCCAACACAAC 685 consensus_5191#1 -GGATAGTACAAGCTTCCAGGAGCTGCAACAAGAACAGCGGAA-GCGTAAAAGTGA---- 716 consensus_5191#2 ------------------------------------------------------------ consensus_5191#0 AGAAAAGAACAGAACNNGAGGNNCGACCACACCAACNAAAAAACACAAAAGAACGAGCAA 745 consensus_5191#1 --CTCCTTCCTCGAGATCGATCAGCAGA-----CCAACAAGCACAGCCG-----AACAAT 764 consensus_5191#2 ------------------------------------------------------------ consensus_5191#0 GCCCCACACCACACGCACCAACNGNANAAAGCACCNACAANAGCANCCGCACCGGNCAAC 805 consensus_5191#1 GCTCA--GCCAGAAGCAGTCCATCTTCCGCAATGTGGCCCTGATGGCCGT--------CA 814 consensus_5191#2 ------------------------------------------------------------ consensus_5191#0 ACCCGAGGTNAGCANAAGACAACGCCCCACAGCGGAGCACCCACAAGNNCAAAAAAGANA 865 consensus_5191#1 GCTC--CTGCACCCACACTGATCAGCGTGTACCGT------------------------- 847 consensus_5191#2 ------------------------------------------------------------ consensus_5191#0 ACAAGGNAANAACCCCACGGAGGCANGCNAGCCAAGAGAACGCCANCAGCGACAANCAGC 925 consensus_5191#1 ------------------------------------------------ consensus_5191#2 ------------------------------------------------ consensus_5191#0 NNGCCCNAAAAAAANCAAAGCAAACAGCACACGCCANCGGCGAANANA 973 |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||