These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5194#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1056 fasta sequence [GCAGAANCGGCACTGAGGCGAGCAGCGAAACTCGATAGACAGTGTCTACCACCAGAGCCGGAGAGGTTCTCTCGATCGAGCTCGACAGTGTATCGTGACGGAACAGTGCGCCATACCAGTGTCCAGTGATCGAGTGCTAGAGCCTAGCTCGCCCCAATTGTTGGTGGTGTGTAGAACAACAGTGAAGAAGAAACAGTGCTGAGAATTTCTCTCCCTACAAGTGAAGAGAAGCAGCTTAGCCACTAG-GCAAAAGTGTACC-GTGCGCTTTTCGCGGTGATCT-CTGCGCGA-TTTTGTTTGTGAAGCGTACTCTAAACAGCAG-GCAGGACTAGAGCTGGACC-GAGCTCCAACCCAACCGTGCGCCATCCTACTCCCGAGTGAAACTTCCTCATCTTCCCAAAGCTCCCGCCCAAAAAGCAACCAAAAATGCAGTCCTCAATGATGGAGAAGCTAAGCTTCCTGTAC-AAACCGTACGTGC-TGGC-GGTGCTGACGCATCGGTTAACATATGCCGGCGAGCTGGGCCACTACCTGATACGGCGTCACCTCGAAATCCGACCGCCATACGCACCTGGACATAACGCGCTGACTCCACGGGACCTAGNCCCANGACAAGGAAAACCATAAACCGGCAACACNCACACCTGGACCGCCACCACGNGAAGCCTTGACCCGGGGCACCCCNAGCATGGACGACCGCGGCAGCNTATCTACATCATCCGGAAAGACANAACCGCACACTGGCACCAACACCANAGCAAGNCACACCACATCCCNAAAACCGCGCCAACCCNNAGCACCCGCAACCCATCGGTCCCCGACAAANCNCNTNGGCGCAACAANCCACAACANCCACAACACANGGGAGCACACCCCCACCCCACCCACACCCCANGACCACGCCCTACACTCCCACACCCACTCGCCCAGGAACNACCAACCAACACGNNCCNCACCCNGCAAACGCCACNNACCCNANACATNCGTGNCCCCNCNANCTGCACTACAAAACGCCGGGGTCAGGACACAAATCGGNAGGAAGGCGGANCACAGCGATGAACA] [+] EMBL BX468543 [GCAGAANCGGCACTGAGGCGAGCAGCGAAACTCGATAGACAGTGTCTACCACCAGAGCCGGAGAGGTTCTCTCGATCGAGCTCGACAGTGTATCGTGACGGAACAGTGCGCCATACCAGTGTCCAGTGATCGAGTGCTAGAGCCTAGCTCGCCCCAATTGTTGGTGGTGTGTAGAACAACAGTGAAGAAGAAACAGTGCTGAGAATTTCTCTCCCTACAAGTGAAGAGAAGCAGCTTAGCCACTAG GCAAAAGTGTACC GTGCGCTTTTCGCGGTGATCT CTGCGCGA TTTTGTTTGTGAAGCGTACTCTAAACAGCAG GCAGGACTAGAGCTGGACC GAGCTCCAACCCAACCGTGCGCCATCCTACTCCCGAGTGAAACTTCCTCATCTTCCCAAAGCTCCCGCCCAAAAAGCAACCAAAAATGCAGTCCTCAATGATGGAGAAGCTAAGCTTCCTGTAC AAACCGTACGTGC TGGC GGTGCTGAC ] [+] EMBL AL695217 [ ccgaggttAAACAGTGCTGAGAATTTCTCTCCCTACAAGTGAAGAGAAGCAGCTTAGCCACTAGTGCAAAAGTGTACCTGTGCGCTTTTCGCGGTGATCTACTGCGCGATTTTTGTTTGTGAAGCGTACTCTAAACAGCAGTGCAGGACTAGAGCTGGACCTGAGCTCCAACCCAACCGTGCGCCATCCTACTCCCGAGTGAAACTTCCTCATCTTCCCAAAGCTCCCGCCCAAAAAGCAA CAAAAATGCAGTCCTCAGTGATGGAGAAGCTAAGCTTCCTGTACAAAACCGTACGTGCTTGGCTGGTGCTGACGCATCGGTTAACATATGCCGGCGAGCTGGGCCACTACCTGATACGGCGTCACCTCGAAATCCGACCGCCATACGCACCTGGACATAACGCGCTGACTCCACGGGACCTAGNCCCANGACAAGGAAAACCATAAACCGGCAACACNCACACCTGGACCGCCACCACGNGAAGCCTTGACCCGGGGCACCCCNAGCATGGACGACCGCGGCAGCNTATCTACATCATCCGGAAAGACANAACCGCACACTGGCACCAACACCANAGCAAGNCACACCACATCCCNAAAACCGCGCCAACCCNNAGCACCCGCAACCCATCGGTCCCCGACAAANCNCNTNGGCGCAACAANCCACAACANCCACAACACANGGGAGCACACCCCCACCCCACCCACACCCCANGACCACGCCCTACACTCCCACACCCACTCGCCCAGGAACNACCAACCAACACGNNCCNCACCCNGCAAACGCCACNNACCCNANACATNCGTGNCCCCNCNANCTGCACTACAAAACGCCGGGGTCAGGACACAAATCGGNAGGAAGGCGGANCACAGCGATGAACA] consensusID : consensus_5194#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 697 fasta sequence [CCGAAGCGGACGAGCAGCGAAACTCGATAGGCAGTGTCTACCACCAGAGCCGGAGAGGTTCTCTCGATCGAGCTCGACAGTGTATCGTGACGGAACAGTGCGCCATACCAGTGTCCAGTGATCGAGTGCTAGAGCCTAGCTCGCCCCAATTGTTGGTGGTGTGTAGAACAACAGTGAAGAAGAAACAGTGCTGAGAATTTCTCTCCCTACAAGTGAAGAGAAGCAGCTTAGCCACTAGGCAAAAGTGTACCGTGCGCTTTTCGCGGTGATCTTTGCGCGATTTTTTTGTGAAGCGTACTCTAAACAGCAGGCAGGACTAGAGCTGGAGCGAGCTCCAACCCAACCGTGCGCCTTCCTACTCCCGAGTGAAACTTCCTCAACTTCCCAAAGCTCCCGCCCAAAAAGCAACCAAAAATGCAGTCCTCAATGATGGAGAAGCTAAGCTTCCTGTACAAACCGTACGTGCTGGCGGTGCTGACGATCGGTTACATTGCCGGCGAGCTGGGCCACTACCTGATCGGCGTCACCTCGAAAGCGACCGCCATCGAGCTGGACTACGGTGATCAGGCCTGCCAGCAGAACCATACCGACTTCCTGCGCCACGAGCTGCCGGCCCAGTGCGCGGAGTTTATCATCGAACACGAGTAAGTTGTTATGGGATCTGCATGCTAAGGTTAGCGTAGTGTAACGCATGCTT] [+] EMBL BM606903 [CCGAAGCGGACGAGCAGCGAAACTCGATAGGCAGTGTCTACCACCAGAGCCGGAGAGGTTCTCTCGATCGAGCTCGACAGTGTATCGTGACGGAACAGTGCGCCATACCAGTGTCCAGTGATCGAGTGCTAGAGCCTAGCTCGCCCCAATTGTTGGTGGTGTGTAGAACAACAGTGAAGAAGAAACAGTGCTGAGAATTTCTCTCCCTACAAGTGAAGAGAAGCAGCTTAGCCACTAGGCAAAAGTGTACCGTGCGCTTTTCGCGGTGATCTTTGCGCGATTTTTTTGTGAAGCGTACTCTAAACAGCAGGCAGGACTAGAGCTGGAGCGAGCTCCAACCCAACCGTGCGCCTTCCTACTCCCGAGTGAAACTTCCTCAACTTCCCAAAGCTCCCGCCCAAAAAGCAACCAAAAATGCAGTCCTCAATGATGGAGAAGCTAAGCTTCCTGTACAAACCGTACGTGCTGGCGGTGCTGACGATCGGTTACATTGCCGGCGAGCTGGGCCACTACCTGATCGGCGTCACCTCGAAAGCGACCGCCATCGAGCTGGACTACGGTGATCAGGCCTGCCAGCAGAACCATACCGACTTCCTGCGCCACGAGCTGCCGGCCCAGTGCGCGGAGTTTATCATCGAACACGAGTAAGTTGTTATGGGATCTGCATGCTAAGGTTAGCGTAGTGTAACGCATGCTT] consensusID : consensus_5194#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 613 fasta sequence [CCGCACCTCGAAAGCGACCGCCATCGAGCTGGACTACGGTGATCAGGCCTGCCAGCAGAACCATACCGACTTCCTGCGCCACGAGCTGCCGGCCCAGTGCGCGGAGTTTATCATCGAACACGAATGCCACCAGCAGCACATCAACGGCACAGTCTACTGCGAGTGGAACTACAATGGGCTCGGGCTGGAGTATCAGCTGCTGGCCGGGCCGAGCTTTATTGCCGTGTTTACGGTGATGGGCGTCGTGCTGGGTGTGGCCGCCGATCGGTACAACCGCGTGCGGATGCTGTTCGTGTGCACGCTCGTGTTTGCCGTGGCCATCCTGCTGCAGGGTACGGTGAAGGAGTACTGGCATCTGATACTGCTGCGCATGGTGATGGCGGCGGGCGAGGCCGGCTGCAATCCGCTCGCCACCGGCATCATGTCCGACATCTTCCCCGAGAGCAAGCGGGCCCTGGTGATGGCCATCTTTAACTGGGGCATCTACGGCGGGTACGGCATCGCGTTCCCGGTCGGCCGTTACATCACCAAGCTGGACATCGGTGGACTGGGCTGGCGTGTGTGCTACTATGGTACGGGTGTGCTGGCACTCATCATGGCCGTGCTGACCGGC] [+] EMBL BM592226 [CCGCACCTCGAAAGCGACCGCCATCGAGCTGGACTACGGTGATCAGGCCTGCCAGCAGAACCATACCGACTTCCTGCGCCACGAGCTGCCGGCCCAGTGCGCGGAGTTTATCATCGAACACGAATGCCACCAGCAGCACATCAACGGCACAGTCTACTGCGAGTGGAACTACAATGGGCTCGGGCTGGAGTATCAGCTGCTGGCCGGGCCGAGCTTTATTGCCGTGTTTACGGTGATGGGCGTCGTGCTGGGTGTGGCCGCCGATCGGTACAACCGCGTGCGGATGCTGTTCGTGTGCACGCTCGTGTTTGCCGTGGCCATCCTGCTGCAGGGTACGGTGAAGGAGTACTGGCATCTGATACTGCTGCGCATGGTGATGGCGGCGGGCGAGGCCGGCTGCAATCCGCTCGCCACCGGCATCATGTCCGACATCTTCCCCGAGAGCAAGCGGGCCCTGGTGATGGCCATCTTTAACTGGGGCATCTACGGCGGGTACGGCATCGCGTTCCCGGTCGGCCGTTACATCACCAAGCTGGACATCGGTGGACTGGGCTGGCGTGTGTGCTACTATGGTACGGGTGTGCTGGCACTCATCATGGCCGTGCTGACCGGC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_5194#0 GCAGAANCGGCACTGAGGCGAGCAGCGAAACTCGATAGACAGTGTCTACCACCAGAGCCG 60 consensus_5194#1 ------CCGAAGCGGA--CGAGCAGCGAAACTCGATAGGCAGTGTCTACCACCAGAGCCG 52 consensus_5194#2 ----------------------------------------------------CCGCACCT 8 * * ** consensus_5194#0 GAGAGGTTCTCTCGATCGAGCTCGACAGTGT--ATCGTGACGGAACAGTGCGCCATACCA 118 consensus_5194#1 GAGAGGTTCTCTCGATCGAGCTCGACAGTGT--ATCGTGACGGAACAGTGCGCCATACCA 110 consensus_5194#2 CGAAAGCGACCGCCATCGAGCTGGACTACGGTGATCAGGCCTGCCAGCAGAACCATACCG 68 * * * * ******** *** * *** * * * * ******* consensus_5194#0 GTGTCCAGTGATCGAGTGCTAG-AGCCTAGCTCGCCCCAATTGTTGGTGG-TGTGTAGAA 176 consensus_5194#1 GTGTCCAGTGATCGAGTGCTAG-AGCCTAGCTCGCCCCAATTGTTGGTGG-TGTGTAGAA 168 consensus_5194#2 ACTTCCTGCG-CCACGAGCTGCCGGCCCAGTGCGCGGAGTTTATCATCGAACACGAATGC 127 *** * * * * *** *** ** *** ** * * * * consensus_5194#0 CAACAGTGAAGAAGAAACAGTGCTGAGAATTTCTCTCCCTACAAGTGAAGAGAAGCAGCT 236 consensus_5194#1 CAACAGTGAAGAAGAAACAGTGCTGAGAATTTCTCTCCCTACAAGTGAAGAGAAGCAGCT 228 consensus_5194#2 CACCAGCAGCACATCAACGGCACAG---------TCTACTGCGAGTG----GAACTACAA 174 ** *** * *** * * * ** * **** *** * consensus_5194#0 TAGCCACTAGGCAAAAGTGTACCGTGCGCTTTTCGCGGTGATCTCTGC-GCGATTTTGTT 295 consensus_5194#1 TAGCCACTAGGCAAAAGTGTACCGTGCGCTTTTCGCGGTGATCTTTGC-GCGATTTT-TT 286 consensus_5194#2 TGGGCTCGGGCTGGA---GTATCAGCTGCTGGCCGGGCCGAGCTTTATTGCCGTGTTTAC 231 * * * * * * *** * *** ** * ** ** * ** * ** consensus_5194#0 TGTGAAGCGTACTCTAAACAGCAGGCAGGACTAGAGCTGGACCGAGCTCCAACCCAACCG 355 consensus_5194#1 TGTGAAGCGTACTCTAAACAGCAGGCAGGACTAGAGCTGGAGCGAGCTCCAACCCAACCG 346 consensus_5194#2 GGTGATGGGCGTCGT----GCTGGGTGTGGCCGCCGATCGGTACAACCGCGTGCGGATGC 287 **** * * * ** * * * * * * * * * * consensus_5194#0 TGCGCCATCCTACTCCCGAGTGAAACTTCCTCATCTTCCCAAAGCTCCCGCCCAAAAAG- 414 consensus_5194#1 TGCGCCTTCCTACTCCCGAGTGAAACTTCCTCAACTTCCCAAAGCTCCCGCCCAAAAAG- 405 consensus_5194#2 TGTTCGTGTGCACGCTCGTGTTTGCCGTGGCCATCCTGCTGCAGGGTACGGTGAAGGAGT 347 ** * ** * ** ** * * ** * * * ** ** ** ** consensus_5194#0 -----CAACCAAAAATGCAGTCCTCAATGATGGAGAAGCTAAGCTTCCTGTACAAACCGT 469 consensus_5194#1 -----CAACCAAAAATGCAGTCCTCAATGATGGAGAAGCTAAGCTTCCTGTACAAACCGT 460 consensus_5194#2 ACTGGCATCTGATACTGCTGCGCATGGTGATGGCGGCGGGCGAGGCCGGCTGCAATCCGC 407 ** * * * *** * * ****** * * * * *** *** consensus_5194#0 ACGTGCTGGCGGTGCTGACGCATCGGTTAACATATGCCGGCGAGCTGGGCCACTACCTGA 529 consensus_5194#1 ACGTGCTGGCGGTGCTGACG-ATCGGTTA-CAT-TGCCGGCGAGCTGGGCCACTACCTGA 517 consensus_5194#2 TC--GCCACCGGCAT---CATGTCCGACATCTT--CCCCGAGAGCAAG--CGGGCCCTGG 458 * ** *** * ** * * * * ** * **** * * **** consensus_5194#0 TACGGCGTCACCTCGAAATCCGACCGCCATACGCACCTGGACATAACGCGCTGACT--CC 587 consensus_5194#1 T-CGGCGTCACCTCGAAAGC-GACCGCCAT-CGAGCTGGACTACGGTGATCAGGCCTGCC 574 consensus_5194#2 TGATG-GCCATCTTTAACTGGGGCATCTACGGCGGGTACGGCATCGCGTTC---CCGGTC 514 * * * ** ** ** * * * * * * * * * consensus_5194#0 ACGGGACCTAGNCCCANGACAAGGAAAACCATAAACCGGC--AACACNCACACCTGGACC 645 consensus_5194#1 AGCAGAACCATACCGACTTCCTGCGCCACGAGCTGCCGGCCCAGTGCGCGGAGTTTATCA 634 consensus_5194#2 GGCCG--TTACATCACCAAGCTGGACATCGGTGGACTGGGCTGGCGTGTGTG-------- 564 * * * * * * ** consensus_5194#0 GCCACCACGNGAAGCCTTGACCCGGGGCACCCCNAGCATGGACGACCGCGGCAGCNTATC 705 consensus_5194#1 TCGAACACGAGTAAG-TTGTTATGGGAT-CTGCATGCTAAGGTTAGCGTAGTGTAACGCA 692 consensus_5194#2 -CTACTATG-GTACGGGTGTGCTGGCACTCATCATGGCCGTGCTGAC-CGGC-------- 613 * * * * * * ** ** * * * * * consensus_5194#0 TACATCATCCGGAAAGACANAACCGCACACTGGCACCAACACCANAGCAAGNCACACCAC 765 consensus_5194#1 TGCTT------------------------------------------------------- 697 consensus_5194#2 ------------------------------------------------------------ consensus_5194#0 ATCCCNAAAACCGCGCCAACCCNNAGCACCCGCAACCCATCGGTCCCCGACAAANCNCNT 825 consensus_5194#1 ------------------------------------------------------------ consensus_5194#2 ------------------------------------------------------------ consensus_5194#0 NGGCGCAACAANCCACAACANCCACAACACANGGGAGCACACCCCCACCCCACCCACACC 885 consensus_5194#1 ------------------------------------------------------------ consensus_5194#2 ------------------------------------------------------------ consensus_5194#0 CCANGACCACGCCCTACACTCCCACACCCACTCGCCCAGGAACNACCAACCAACACGNNC 945 consensus_5194#1 ------------------------------------------------------------ consensus_5194#2 ------------------------------------------------------------ consensus_5194#0 CNCACCCNGCAAACGCCACNNACCCNANACATNCGTGNCCCCNCNANCTGCACTACAAAA 1005 consensus_5194#1 ------------------------------------------------------------ consensus_5194#2 ------------------------------------------------------------ consensus_5194#0 CGCCGGGGTCAGGACACAAATCGGNAGGAAGGCGGANCACAGCGATGAACA 1056 consensus_5194#1 --------------------------------------------------- consensus_5194#2 --------------------------------------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||