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Anopheles gambiae
cluster # 5196 cluster # 5196       Sequences # 4       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_5196#0 length = 1031 sequences # 3  
consensus_5196#1 length = 711 sequences # 1  

consensusID : consensus_5196#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 1031
fasta sequence
                              [TCCTCGATCGTGGTGGCGATGCTGCATCTCATCGGTTCGTACGTCTCGACTATGACGGTCGAGAATGCGGGCCGCCGGGTGCTGCTGGTCGTATCGACGCTCGGTTGCGCCGTCTGCACCACCACGATGGGCACATACACCTTCCTGCAGGCGATGCGCGTCGAGGTGGACTGGTTCCGGTGGGTGCCGGTCGCCAGCATGTCCGCGCTAGTCTTCATCAATGCCATCGGCATCGGTATTGTGCCATTCATTATCATGACCGAGATCCTCGATCCGAAGATCCGCGGCTCGGTCGTCACCTTTTGTCTGCTGGAGTTTTCCGGCGTCGCGTACCTAGTCGTCAAGTACTTCCCGATCGCGGTTGAGCAGCTCGGGATGCACTCGTGCATGTGGTTCTTCTCCTGCTGCTGCGTCGCGTCCGCCACCTTTGTCCTCACCTGTATGCCGGAGACGAAGGGCAAGAGCTTCGAGCAGATCTCCGAATCTCTGAATGGTGGCAAGAAGTCCGGCCACAAGGATGTCGCTCCGACGGCCGTCTGACACACCGCTTAACGCGGTACGACGGTGAAGTCGCCATCGTGCACGCTGCGTGTGTTTTAAACGCGTTTGTTTTCGTTATGTTTTATATATCCTTATTAATTACCTCCCACAGCATCTTGAGTTGTATTATACACTTTATTCATGACATAAGCATACCTTCTGTCGTTTATATGTATGTATGTATGTATGTATGTATATCTGAATCAAAGCATACAAAACCGAAAAGAAACAAACACTCGTGCATTCGGAACGTAGCAGGAGTCAAAAGGAAGGTTGCTAGCTGTGTGTAACTGCCGGTTGATGTTCAATTTCAAGTGAACAAGAAGACGACAACCACACCAAAACAGCAGCATATTCTAGAATCAAAAAAACCTATATGATTACGGTACAATAATTAAGTAGTAACTAACGAAGCATTTAGGAGATGTGAAAGCTGAACAGTAACAGGAACAGCCACAAAAAAAGGATGGAATTTCGTTGATAGGAGCAAA]

[+] EMBL BX605197             [TCCTCGATCGTGGTGGCGATGCTGCATCTCATCGGTTCGTACGTCTCGACTATGACGGTCGAGAATGCGGGCCGCCGGGTGCTGCTGGTCGTATCGACGCTCGGTTGCGCCGTCTGCACCACCACGATGGGCACATACACCTTCCTGCAGGCGATGCGCGTCGAGGTGGACTGGTTCCGGTGGGTGCCGGTCGCCAGCATGTCCGCGCTAGTCTTCATCAATGCCATCGGCATCGGTATTGTGCCATTCATTATCATGACCGAGATCCTCGATCCGAAGATCCGCGGCTCGGTCGTCACCTTTTGTCTGCTGGAGTTTTCCGGCGTCGCGTACCTAGTCGTCAAGTACTTCCCGATCGCGGTTGAGCAGCTCGGGATGCACTCGTGCATGTGGTTCTTCTCCTGCTGCTGCGTCGCGTCCGCCACCTTTGTCCTCACCTGTATGCCGGAGACGAAGGGCAAGAGCTTCGAGCAGATCTCCGAATCTCTGAATGGTGGCAAGAAGTCCGGCCACAAGGATGTCGCTCCGACGGCCGTCTGACACACCGCTTAACGCGGTACGACGGTGAAGTCGCCATCGTGCACGCTGCGTGTGTTTTAAACGCG                                                                                                                                                                                                                                                                                                                                                                                                                                          ]
[+] EMBL BX609312             [                                          GTCTCGACTATGACGGTCGAGAATGCGGGCCGCCGGGTGCTGCTGGTCGTATCGACGCTCGGTTGCGCCGTCTGCACCACCACGATGGGCACATACACCTTCCTGCAGGCGATGCGCGTCGAGGTGGACTGGTTCCGGTGGGTGCCGGTCGCCAGCATGTCCGCGCTAGTCTTCATCAATGCCATCGGCATCGGTATTGTGCCATTCATTATCATGACCGAGATCCTCGATCCGAAGATCCGCGGCTCGGTCGTCACCTTTTGTCTGCTGGAGTTTTCCGGCGTCGCGTACCTAGTCGTCAAGTACTTCCCGATCGCGGTTGAGCAGCTCGGGATGCACTCGTGCATGTGGTTCTTCTCCTGCTGCTGCGTCGCGTCCGCCACCTTTGTCCTCACCTGTATGCCGGAGACGAAGGGCAAGAGCTTCGAGCAGATCTCCGAATCTCTGAATGGTGGCAAGAAGTCCGGCCACAAGGATGTCGCTCCGACGGCCGTCTGACACACCGCTTAACGCGGTACGACGGTGAAGTCGCCATCGTGCACGCTGCGTGTGTTTTAAACGCGTTTGTTTTCGTTATGTTTTATATATCCTTATTAATTACCTCCCACAGCATCTTGAGTTGTATTATACACTTTATTCATGACATAAGC                                                                                                                                                                                                                                                                                                                                                   ]
[+] EMBL BM639285             [                                                                                                                                                                                                                                                                                                                                                                                           ccgCGTGCATGTGGTTCTTCTCCTGCTGCTGCGTCGCGTCCGCCACCTTTGTCCTCACCTGTATGCCGGAGACGAAGGGCAAGAGCTTCGAGCATATCTCCGAATCTCTGAATGGTGGCAAGAAGTCCGGCCACAAGGATGTCGCTCCGACGGCCGTCTGACACACCGCTTAACGCGGTACGACGGTGAAGTCGCCATCGTGCACGCTGCGTGTGTTTTAAACGCGTTTGTTTTCGTTATGTTTTATATATCCTTATTAATTACCTCCCACAGCATCTTGAATTGTATTATACACTTTATTCATGACATAAGCATACCTTCTGTCGTTTATATGTATGTATGTATGTATGTATGTATATCTGAATCAAAGCATACAAAACCGAAAAGAAACAAACACTCGTGCATTCGGAACGTAGCAGGAGTCAAAAGGAAGGTTGCTAGCTGTGTGTAACTGCCGGTTGATGTTCAATTTCAAGTGAACAAGAAGACGACAACCACACCAAAACAGCAGCATATTCTAGAATCAAAAAAACCTATATGATTACGGTACAATAATTAAGTAGTAACTAACGAAGCATTTAGGAGATGTGAAAGCTGAACAGTAACAGGAACAGCCACAAAAAAAGGATGGAATTTCGTTGATAGGAGCAAA]


>consensus_5196#0 TCCTCGATCGTGGTGGCGATGCTGCATCTCATCGGTTCGTACGTCTCGACTATGACGGTC GAGAATGCGGGCCGCCGGGTGCTGCTGGTCGTATCGACGCTCGGTTGCGCCGTCTGCACC ACCACGATGGGCACATACACCTTCCTGCAGGCGATGCGCGTCGAGGTGGACTGGTTCCGG TGGGTGCCGGTCGCCAGCATGTCCGCGCTAGTCTTCATCAATGCCATCGGCATCGGTATT GTGCCATTCATTATCATGACCGAGATCCTCGATCCGAAGATCCGCGGCTCGGTCGTCACC TTTTGTCTGCTGGAGTTTTCCGGCGTCGCGTACCTAGTCGTCAAGTACTTCCCGATCGCG GTTGAGCAGCTCGGGATGCACTCGTGCATGTGGTTCTTCTCCTGCTGCTGCGTCGCGTCC GCCACCTTTGTCCTCACCTGTATGCCGGAGACGAAGGGCAAGAGCTTCGAGCAGATCTCC GAATCTCTGAATGGTGGCAAGAAGTCCGGCCACAAGGATGTCGCTCCGACGGCCGTCTGA CACACCGCTTAACGCGGTACGACGGTGAAGTCGCCATCGTGCACGCTGCGTGTGTTTTAA ACGCGTTTGTTTTCGTTATGTTTTATATATCCTTATTAATTACCTCCCACAGCATCTTGA GTTGTATTATACACTTTATTCATGACATAAGCATACCTTCTGTCGTTTATATGTATGTAT GTATGTATGTATGTATATCTGAATCAAAGCATACAAAACCGAAAAGAAACAAACACTCGT GCATTCGGAACGTAGCAGGAGTCAAAAGGAAGGTTGCTAGCTGTGTGTAACTGCCGGTTG ATGTTCAATTTCAAGTGAACAAGAAGACGACAACCACACCAAAACAGCAGCATATTCTAG AATCAAAAAAACCTATATGATTACGGTACAATAATTAAGTAGTAACTAACGAAGCATTTA GGAGATGTGAAAGCTGAACAGTAACAGGAACAGCCACAAAAAAAGGATGGAATTTCGTTG ATAGGAGCAAA



consensusID : consensus_5196#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 711
fasta sequence
                              [CCGAGGTTTAGAGGTGGACTGGTTCCGGTGGGTGCCGGTCGCCAGCATGTCGCGCTAGTCTTCATCAATGCCATCGGCATCGGTATTGTGCCATTCATTATCATGACCGAGATCCTCGATCCGAAGATCCGCGGCTCGGTCGTCACCTTTTGTCTGCTGGAGTTTTCCGGCGTCGCGTACCTAGTCGTCAAGTACTTCCCGATCGCGGTTGAGCAGCTCGGGATGCACTCGTGCATGTGGTTCTTCTCCTGGCTGCTGCGCTCGCGTCCGCCACCTTTGTCCTCACCTGTATGCCGGAGACGAAGGGCAAGAGCTTCGAGCAGATCTCCGAATCTCTGAATGGTGGCAAGAAGTCCGGCACAAGGATGTCGCTCCGACGGCCGTCTGACACACCGCTTAACGCGGTACGACGGTGAAGTCGCCATCGTGCACGCTGCGTGTGTATNAAACGCGTACGTCACCGCTCATGTCATATATCCTTATTAACTTACCTCCCACAGCATACTTGCAATTGTATTATACACTTTACTNCATGACATAAAGCATACCCTTTCCTGATACGNTCTACTAATAGTAATGTACTGCTACTGCTACTTGCTATTGTACTAATCTGAATCAAAAGGCCATACAACAACCCGANCAACAGGAAACAAAACCACNTACGCTGCATTCGGAACGTACCCAGAGTCAACANGGGAAAGGTNGCNAACT]

[+] EMBL AL695305             [CCGAGGTTTAGAGGTGGACTGGTTCCGGTGGGTGCCGGTCGCCAGCATGTCGCGCTAGTCTTCATCAATGCCATCGGCATCGGTATTGTGCCATTCATTATCATGACCGAGATCCTCGATCCGAAGATCCGCGGCTCGGTCGTCACCTTTTGTCTGCTGGAGTTTTCCGGCGTCGCGTACCTAGTCGTCAAGTACTTCCCGATCGCGGTTGAGCAGCTCGGGATGCACTCGTGCATGTGGTTCTTCTCCTGGCTGCTGCGCTCGCGTCCGCCACCTTTGTCCTCACCTGTATGCCGGAGACGAAGGGCAAGAGCTTCGAGCAGATCTCCGAATCTCTGAATGGTGGCAAGAAGTCCGGCACAAGGATGTCGCTCCGACGGCCGTCTGACACACCGCTTAACGCGGTACGACGGTGAAGTCGCCATCGTGCACGCTGCGTGTGTATNAAACGCGTACGTCACCGCTCATGTCATATATCCTTATTAACTTACCTCCCACAGCATACTTGCAATTGTATTATACACTTTACTNCATGACATAAAGCATACCCTTTCCTGATACGNTCTACTAATAGTAATGTACTGCTACTGCTACTTGCTATTGTACTAATCTGAATCAAAAGGCCATACAACAACCCGANCAACAGGAAACAAAACCACNTACGCTGCATTCGGAACGTACCCAGAGTCAACANGGGAAAGGTNGCNAACT]


>consensus_5196#1 CCGAGGTTTAGAGGTGGACTGGTTCCGGTGGGTGCCGGTCGCCAGCATGTCGCGCTAGTC TTCATCAATGCCATCGGCATCGGTATTGTGCCATTCATTATCATGACCGAGATCCTCGAT CCGAAGATCCGCGGCTCGGTCGTCACCTTTTGTCTGCTGGAGTTTTCCGGCGTCGCGTAC CTAGTCGTCAAGTACTTCCCGATCGCGGTTGAGCAGCTCGGGATGCACTCGTGCATGTGG TTCTTCTCCTGGCTGCTGCGCTCGCGTCCGCCACCTTTGTCCTCACCTGTATGCCGGAGA CGAAGGGCAAGAGCTTCGAGCAGATCTCCGAATCTCTGAATGGTGGCAAGAAGTCCGGCA CAAGGATGTCGCTCCGACGGCCGTCTGACACACCGCTTAACGCGGTACGACGGTGAAGTC GCCATCGTGCACGCTGCGTGTGTATNAAACGCGTACGTCACCGCTCATGTCATATATCCT TATTAACTTACCTCCCACAGCATACTTGCAATTGTATTATACACTTTACTNCATGACATA AAGCATACCCTTTCCTGATACGNTCTACTAATAGTAATGTACTGCTACTGCTACTTGCTA TTGTACTAATCTGAATCAAAAGGCCATACAACAACCCGANCAACAGGAAACAAAACCACN TACGCTGCATTCGGAACGTACCCAGAGTCAACANGGGAAAGGTNGCNAACT



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_5196#0      TCCTCGATCGTGGTGGCGATGCTGCATCTCATCGGTTCGTACGTCTCGACTATGACGGTC 60
consensus_5196#1      ------------------------------------------------------------
                                                                                  

consensus_5196#0      GAGAATGCGGGCCGCCGGGTGCTGCTGGTCGTATCGACGCTCGGTTGCGCCGTCTGCACC 120
consensus_5196#1      ------------------------------------------------------------
                                                                                  

consensus_5196#0      ACCACGATGGGCACATACACCTTCCTGCAGGCGATGCGCGTCGAGGTGGACTGGTTCCGG 180
consensus_5196#1      ------------------------------CCGAGGTTTA--GAGGTGGACTGGTTCCGG 28
                                                     *** *      ******************

consensus_5196#0      TGGGTGCCGGTCGCCAGCATGTCCGCGCTAGTCTTCATCAATGCCATCGGCATCGGTATT 240
consensus_5196#1      TGGGTGCCGGTCGCCAGCATGTC-GCGCTAGTCTTCATCAATGCCATCGGCATCGGTATT 87
                      *********************** ************************************

consensus_5196#0      GTGCCATTCATTATCATGACCGAGATCCTCGATCCGAAGATCCGCGGCTCGGTCGTCACC 300
consensus_5196#1      GTGCCATTCATTATCATGACCGAGATCCTCGATCCGAAGATCCGCGGCTCGGTCGTCACC 147
                      ************************************************************

consensus_5196#0      TTTTGTCTGCTGGAGTTTTCCGGCGTCGCGTACCTAGTCGTCAAGTACTTCCCGATCGCG 360
consensus_5196#1      TTTTGTCTGCTGGAGTTTTCCGGCGTCGCGTACCTAGTCGTCAAGTACTTCCCGATCGCG 207
                      ************************************************************

consensus_5196#0      GTTGAGCAGCTCGGGATGCACTCGTGCATGTGGTTCTTCTCCTG-CTGCTGCG-TCGCGT 418
consensus_5196#1      GTTGAGCAGCTCGGGATGCACTCGTGCATGTGGTTCTTCTCCTGGCTGCTGCGCTCGCGT 267
                      ******************************************** ******** ******

consensus_5196#0      CCGCCACCTTTGTCCTCACCTGTATGCCGGAGACGAAGGGCAAGAGCTTCGAGCAGATCT 478
consensus_5196#1      CCGCCACCTTTGTCCTCACCTGTATGCCGGAGACGAAGGGCAAGAGCTTCGAGCAGATCT 327
                      ************************************************************

consensus_5196#0      CCGAATCTCTGAATGGTGGCAAGAAGTCCGGCCACAAGGATGTCGCTCCGACGGCCGTCT 538
consensus_5196#1      CCGAATCTCTGAATGGTGGCAAGAAGTCCGGC-ACAAGGATGTCGCTCCGACGGCCGTCT 386
                      ******************************** ***************************

consensus_5196#0      GACACACCGCTTAACGCGGTACGACGGTGAAGTCGCCATCGTGCACGCTGCGTGTGTTTT 598
consensus_5196#1      GACACACCGCTTAACGCGGTACGACGGTGAAGTCGCCATCGTGCACGCTGCGTGTGTATN 446
                      ********************************************************* * 

consensus_5196#0      AAACGCGTTTGTTTTCGTTATGTTTTATATATCCTTATTAA-TTACCTCCCACAGCAT-C 656
consensus_5196#1      AAACGCGTACGTCACCGCT-CATGTCATATATCCTTATTAACTTACCTCCCACAGCATAC 505
                      ********  **   ** *   * * *************** **************** *

consensus_5196#0      TTG-AGTTGTATTATACACTTTA-TTCATGACATAA-GCATACCTTCTGTCGTTTATATG 713
consensus_5196#1      TTGCAATTGTATTATACACTTTACTNCATGACATAAAGCATACCCTTTCCTGATACGNTC 565
                      *** * ***************** * ********** ******* * *   * *    * 

consensus_5196#0      TATGTATGTATGTATGTATGTATATCTGAATCAAAGCATACAAAACCGAAAAGAAACAAA 773
consensus_5196#1      TACTAATAGTAATGTACTGCTACTGCTACTTGCTATTGTACTAATCTGAATCAAAA-GGC 624
                      **   **     * *     **   **   *   *   *** ** * ***   ***    

consensus_5196#0      CACTCGTGCATTCGGAACGTAGCAGGAGTCAAAAGGAAGGTTGCTAGCTGTGTGTAACTG 833
consensus_5196#1      CATACA-ACAACCCGANC--AACAGGAAACAAAACCA-----------CNTACGCTGCAT 670
                      **  *   **  * ** *  * *****  *****  *             *  *   *  

consensus_5196#0      CCGGTTGATGTTCAATTTCAAGTGAACAAGAAGACGACAACCACACCAAAACAGCAGCAT 893
consensus_5196#1      TCGGAACGTACCCAGAGTCAA-CANGGGAAAGGTNGCNAACT------------------ 711
                       ***    *   **   ****       * * *  *  ***                   

consensus_5196#0      ATTCTAGAATCAAAAAAACCTATATGATTACGGTACAATAATTAAGTAGTAACTAACGAA 953
consensus_5196#1      ------------------------------------------------------------
                                                                                  

consensus_5196#0      GCATTTAGGAGATGTGAAAGCTGAACAGTAACAGGAACAGCCACAAAAAAAGGATGGAAT 1013
consensus_5196#1      ------------------------------------------------------------
                                                                                  

consensus_5196#0      TTCGTTGATAGGAGCAAA 1031
consensus_5196#1      ------------------
                                        




Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner    (hubert.wassner@noos.fr)