These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5196#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1031 fasta sequence [TCCTCGATCGTGGTGGCGATGCTGCATCTCATCGGTTCGTACGTCTCGACTATGACGGTCGAGAATGCGGGCCGCCGGGTGCTGCTGGTCGTATCGACGCTCGGTTGCGCCGTCTGCACCACCACGATGGGCACATACACCTTCCTGCAGGCGATGCGCGTCGAGGTGGACTGGTTCCGGTGGGTGCCGGTCGCCAGCATGTCCGCGCTAGTCTTCATCAATGCCATCGGCATCGGTATTGTGCCATTCATTATCATGACCGAGATCCTCGATCCGAAGATCCGCGGCTCGGTCGTCACCTTTTGTCTGCTGGAGTTTTCCGGCGTCGCGTACCTAGTCGTCAAGTACTTCCCGATCGCGGTTGAGCAGCTCGGGATGCACTCGTGCATGTGGTTCTTCTCCTGCTGCTGCGTCGCGTCCGCCACCTTTGTCCTCACCTGTATGCCGGAGACGAAGGGCAAGAGCTTCGAGCAGATCTCCGAATCTCTGAATGGTGGCAAGAAGTCCGGCCACAAGGATGTCGCTCCGACGGCCGTCTGACACACCGCTTAACGCGGTACGACGGTGAAGTCGCCATCGTGCACGCTGCGTGTGTTTTAAACGCGTTTGTTTTCGTTATGTTTTATATATCCTTATTAATTACCTCCCACAGCATCTTGAGTTGTATTATACACTTTATTCATGACATAAGCATACCTTCTGTCGTTTATATGTATGTATGTATGTATGTATGTATATCTGAATCAAAGCATACAAAACCGAAAAGAAACAAACACTCGTGCATTCGGAACGTAGCAGGAGTCAAAAGGAAGGTTGCTAGCTGTGTGTAACTGCCGGTTGATGTTCAATTTCAAGTGAACAAGAAGACGACAACCACACCAAAACAGCAGCATATTCTAGAATCAAAAAAACCTATATGATTACGGTACAATAATTAAGTAGTAACTAACGAAGCATTTAGGAGATGTGAAAGCTGAACAGTAACAGGAACAGCCACAAAAAAAGGATGGAATTTCGTTGATAGGAGCAAA] [+] EMBL BX605197 [TCCTCGATCGTGGTGGCGATGCTGCATCTCATCGGTTCGTACGTCTCGACTATGACGGTCGAGAATGCGGGCCGCCGGGTGCTGCTGGTCGTATCGACGCTCGGTTGCGCCGTCTGCACCACCACGATGGGCACATACACCTTCCTGCAGGCGATGCGCGTCGAGGTGGACTGGTTCCGGTGGGTGCCGGTCGCCAGCATGTCCGCGCTAGTCTTCATCAATGCCATCGGCATCGGTATTGTGCCATTCATTATCATGACCGAGATCCTCGATCCGAAGATCCGCGGCTCGGTCGTCACCTTTTGTCTGCTGGAGTTTTCCGGCGTCGCGTACCTAGTCGTCAAGTACTTCCCGATCGCGGTTGAGCAGCTCGGGATGCACTCGTGCATGTGGTTCTTCTCCTGCTGCTGCGTCGCGTCCGCCACCTTTGTCCTCACCTGTATGCCGGAGACGAAGGGCAAGAGCTTCGAGCAGATCTCCGAATCTCTGAATGGTGGCAAGAAGTCCGGCCACAAGGATGTCGCTCCGACGGCCGTCTGACACACCGCTTAACGCGGTACGACGGTGAAGTCGCCATCGTGCACGCTGCGTGTGTTTTAAACGCG ] [+] EMBL BX609312 [ GTCTCGACTATGACGGTCGAGAATGCGGGCCGCCGGGTGCTGCTGGTCGTATCGACGCTCGGTTGCGCCGTCTGCACCACCACGATGGGCACATACACCTTCCTGCAGGCGATGCGCGTCGAGGTGGACTGGTTCCGGTGGGTGCCGGTCGCCAGCATGTCCGCGCTAGTCTTCATCAATGCCATCGGCATCGGTATTGTGCCATTCATTATCATGACCGAGATCCTCGATCCGAAGATCCGCGGCTCGGTCGTCACCTTTTGTCTGCTGGAGTTTTCCGGCGTCGCGTACCTAGTCGTCAAGTACTTCCCGATCGCGGTTGAGCAGCTCGGGATGCACTCGTGCATGTGGTTCTTCTCCTGCTGCTGCGTCGCGTCCGCCACCTTTGTCCTCACCTGTATGCCGGAGACGAAGGGCAAGAGCTTCGAGCAGATCTCCGAATCTCTGAATGGTGGCAAGAAGTCCGGCCACAAGGATGTCGCTCCGACGGCCGTCTGACACACCGCTTAACGCGGTACGACGGTGAAGTCGCCATCGTGCACGCTGCGTGTGTTTTAAACGCGTTTGTTTTCGTTATGTTTTATATATCCTTATTAATTACCTCCCACAGCATCTTGAGTTGTATTATACACTTTATTCATGACATAAGC ] [+] EMBL BM639285 [ ccgCGTGCATGTGGTTCTTCTCCTGCTGCTGCGTCGCGTCCGCCACCTTTGTCCTCACCTGTATGCCGGAGACGAAGGGCAAGAGCTTCGAGCATATCTCCGAATCTCTGAATGGTGGCAAGAAGTCCGGCCACAAGGATGTCGCTCCGACGGCCGTCTGACACACCGCTTAACGCGGTACGACGGTGAAGTCGCCATCGTGCACGCTGCGTGTGTTTTAAACGCGTTTGTTTTCGTTATGTTTTATATATCCTTATTAATTACCTCCCACAGCATCTTGAATTGTATTATACACTTTATTCATGACATAAGCATACCTTCTGTCGTTTATATGTATGTATGTATGTATGTATGTATATCTGAATCAAAGCATACAAAACCGAAAAGAAACAAACACTCGTGCATTCGGAACGTAGCAGGAGTCAAAAGGAAGGTTGCTAGCTGTGTGTAACTGCCGGTTGATGTTCAATTTCAAGTGAACAAGAAGACGACAACCACACCAAAACAGCAGCATATTCTAGAATCAAAAAAACCTATATGATTACGGTACAATAATTAAGTAGTAACTAACGAAGCATTTAGGAGATGTGAAAGCTGAACAGTAACAGGAACAGCCACAAAAAAAGGATGGAATTTCGTTGATAGGAGCAAA] consensusID : consensus_5196#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 711 fasta sequence [CCGAGGTTTAGAGGTGGACTGGTTCCGGTGGGTGCCGGTCGCCAGCATGTCGCGCTAGTCTTCATCAATGCCATCGGCATCGGTATTGTGCCATTCATTATCATGACCGAGATCCTCGATCCGAAGATCCGCGGCTCGGTCGTCACCTTTTGTCTGCTGGAGTTTTCCGGCGTCGCGTACCTAGTCGTCAAGTACTTCCCGATCGCGGTTGAGCAGCTCGGGATGCACTCGTGCATGTGGTTCTTCTCCTGGCTGCTGCGCTCGCGTCCGCCACCTTTGTCCTCACCTGTATGCCGGAGACGAAGGGCAAGAGCTTCGAGCAGATCTCCGAATCTCTGAATGGTGGCAAGAAGTCCGGCACAAGGATGTCGCTCCGACGGCCGTCTGACACACCGCTTAACGCGGTACGACGGTGAAGTCGCCATCGTGCACGCTGCGTGTGTATNAAACGCGTACGTCACCGCTCATGTCATATATCCTTATTAACTTACCTCCCACAGCATACTTGCAATTGTATTATACACTTTACTNCATGACATAAAGCATACCCTTTCCTGATACGNTCTACTAATAGTAATGTACTGCTACTGCTACTTGCTATTGTACTAATCTGAATCAAAAGGCCATACAACAACCCGANCAACAGGAAACAAAACCACNTACGCTGCATTCGGAACGTACCCAGAGTCAACANGGGAAAGGTNGCNAACT] [+] EMBL AL695305 [CCGAGGTTTAGAGGTGGACTGGTTCCGGTGGGTGCCGGTCGCCAGCATGTCGCGCTAGTCTTCATCAATGCCATCGGCATCGGTATTGTGCCATTCATTATCATGACCGAGATCCTCGATCCGAAGATCCGCGGCTCGGTCGTCACCTTTTGTCTGCTGGAGTTTTCCGGCGTCGCGTACCTAGTCGTCAAGTACTTCCCGATCGCGGTTGAGCAGCTCGGGATGCACTCGTGCATGTGGTTCTTCTCCTGGCTGCTGCGCTCGCGTCCGCCACCTTTGTCCTCACCTGTATGCCGGAGACGAAGGGCAAGAGCTTCGAGCAGATCTCCGAATCTCTGAATGGTGGCAAGAAGTCCGGCACAAGGATGTCGCTCCGACGGCCGTCTGACACACCGCTTAACGCGGTACGACGGTGAAGTCGCCATCGTGCACGCTGCGTGTGTATNAAACGCGTACGTCACCGCTCATGTCATATATCCTTATTAACTTACCTCCCACAGCATACTTGCAATTGTATTATACACTTTACTNCATGACATAAAGCATACCCTTTCCTGATACGNTCTACTAATAGTAATGTACTGCTACTGCTACTTGCTATTGTACTAATCTGAATCAAAAGGCCATACAACAACCCGANCAACAGGAAACAAAACCACNTACGCTGCATTCGGAACGTACCCAGAGTCAACANGGGAAAGGTNGCNAACT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_5196#0 TCCTCGATCGTGGTGGCGATGCTGCATCTCATCGGTTCGTACGTCTCGACTATGACGGTC 60 consensus_5196#1 ------------------------------------------------------------ consensus_5196#0 GAGAATGCGGGCCGCCGGGTGCTGCTGGTCGTATCGACGCTCGGTTGCGCCGTCTGCACC 120 consensus_5196#1 ------------------------------------------------------------ consensus_5196#0 ACCACGATGGGCACATACACCTTCCTGCAGGCGATGCGCGTCGAGGTGGACTGGTTCCGG 180 consensus_5196#1 ------------------------------CCGAGGTTTA--GAGGTGGACTGGTTCCGG 28 *** * ****************** consensus_5196#0 TGGGTGCCGGTCGCCAGCATGTCCGCGCTAGTCTTCATCAATGCCATCGGCATCGGTATT 240 consensus_5196#1 TGGGTGCCGGTCGCCAGCATGTC-GCGCTAGTCTTCATCAATGCCATCGGCATCGGTATT 87 *********************** ************************************ consensus_5196#0 GTGCCATTCATTATCATGACCGAGATCCTCGATCCGAAGATCCGCGGCTCGGTCGTCACC 300 consensus_5196#1 GTGCCATTCATTATCATGACCGAGATCCTCGATCCGAAGATCCGCGGCTCGGTCGTCACC 147 ************************************************************ consensus_5196#0 TTTTGTCTGCTGGAGTTTTCCGGCGTCGCGTACCTAGTCGTCAAGTACTTCCCGATCGCG 360 consensus_5196#1 TTTTGTCTGCTGGAGTTTTCCGGCGTCGCGTACCTAGTCGTCAAGTACTTCCCGATCGCG 207 ************************************************************ consensus_5196#0 GTTGAGCAGCTCGGGATGCACTCGTGCATGTGGTTCTTCTCCTG-CTGCTGCG-TCGCGT 418 consensus_5196#1 GTTGAGCAGCTCGGGATGCACTCGTGCATGTGGTTCTTCTCCTGGCTGCTGCGCTCGCGT 267 ******************************************** ******** ****** consensus_5196#0 CCGCCACCTTTGTCCTCACCTGTATGCCGGAGACGAAGGGCAAGAGCTTCGAGCAGATCT 478 consensus_5196#1 CCGCCACCTTTGTCCTCACCTGTATGCCGGAGACGAAGGGCAAGAGCTTCGAGCAGATCT 327 ************************************************************ consensus_5196#0 CCGAATCTCTGAATGGTGGCAAGAAGTCCGGCCACAAGGATGTCGCTCCGACGGCCGTCT 538 consensus_5196#1 CCGAATCTCTGAATGGTGGCAAGAAGTCCGGC-ACAAGGATGTCGCTCCGACGGCCGTCT 386 ******************************** *************************** consensus_5196#0 GACACACCGCTTAACGCGGTACGACGGTGAAGTCGCCATCGTGCACGCTGCGTGTGTTTT 598 consensus_5196#1 GACACACCGCTTAACGCGGTACGACGGTGAAGTCGCCATCGTGCACGCTGCGTGTGTATN 446 ********************************************************* * consensus_5196#0 AAACGCGTTTGTTTTCGTTATGTTTTATATATCCTTATTAA-TTACCTCCCACAGCAT-C 656 consensus_5196#1 AAACGCGTACGTCACCGCT-CATGTCATATATCCTTATTAACTTACCTCCCACAGCATAC 505 ******** ** ** * * * *************** **************** * consensus_5196#0 TTG-AGTTGTATTATACACTTTA-TTCATGACATAA-GCATACCTTCTGTCGTTTATATG 713 consensus_5196#1 TTGCAATTGTATTATACACTTTACTNCATGACATAAAGCATACCCTTTCCTGATACGNTC 565 *** * ***************** * ********** ******* * * * * * consensus_5196#0 TATGTATGTATGTATGTATGTATATCTGAATCAAAGCATACAAAACCGAAAAGAAACAAA 773 consensus_5196#1 TACTAATAGTAATGTACTGCTACTGCTACTTGCTATTGTACTAATCTGAATCAAAA-GGC 624 ** ** * * ** ** * * *** ** * *** *** consensus_5196#0 CACTCGTGCATTCGGAACGTAGCAGGAGTCAAAAGGAAGGTTGCTAGCTGTGTGTAACTG 833 consensus_5196#1 CATACA-ACAACCCGANC--AACAGGAAACAAAACCA-----------CNTACGCTGCAT 670 ** * ** * ** * * ***** ***** * * * * consensus_5196#0 CCGGTTGATGTTCAATTTCAAGTGAACAAGAAGACGACAACCACACCAAAACAGCAGCAT 893 consensus_5196#1 TCGGAACGTACCCAGAGTCAA-CANGGGAAAGGTNGCNAACT------------------ 711 *** * ** **** * * * * *** consensus_5196#0 ATTCTAGAATCAAAAAAACCTATATGATTACGGTACAATAATTAAGTAGTAACTAACGAA 953 consensus_5196#1 ------------------------------------------------------------ consensus_5196#0 GCATTTAGGAGATGTGAAAGCTGAACAGTAACAGGAACAGCCACAAAAAAAGGATGGAAT 1013 consensus_5196#1 ------------------------------------------------------------ consensus_5196#0 TTCGTTGATAGGAGCAAA 1031 consensus_5196#1 ------------------ |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||