These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5204#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 870 fasta sequence [ATCCCCCGAGGTTTNAACGATTATTTATGCACGCGTCTGGTCGTCGTTATCAATCATGTTAAAGTTACCCTTCGTTTTAAGTGGGAAATAGAAGATGCCTGTCCTCGTGCGCTCTATCTCACCGGCGACAAGGCACGGGAACAGTTCGCGGTGTTAGTACCCTACCTCGACTTTCATCACAAATTGGGCAATTTAGAGCGCTTAAAACAGAACATCCGGCTGCGAAAGTATTCCACTGGATTGCGACAATCTCATACAGCAGTGGGAGCTGTACCGGGACGTGGAGAAGGGGCGGGAAAAAAGGAAATCGAGCAGTACCGCGTGGACCTGCAGAAGCGTATCCAGCAGTCGTCCAGCAAGNGAGTGAACAGCAGCAAANTACAAGTCAAGGTGCCGTCCTTGCTCCNGGATGATTTAACAAATGCTCAAAGAGCAGAGCTACAAAGTGGCCGATGCATTTATTGCCAACAGCTTTCTGTCCATCCCGAACGATCTGCAC-GAACGTACACCCGAAGAGGGGGCGAAATGTATTTACGAAAAACCGGTACCACCCCGAGCAGCCACGAGCAATCGACCGAGCAAT--GTCGACCCGGTTCAGGAGCAGCTGGAAGAATTCGGTCCTGCATGTCTGTACATGACAGGGGATGCGGCCTGGATGGACCTTCGATTGCCGATGTACTGCAGCGAACTGTTTCNGCGCAATAAATGCATCCTGTTCTGCNATCCTGACTTTGTGCGGAGCTTTCTGGGTGAGGCGGCTATGGTGAGCAAGGAGTCGCTGTTTCTGGTACAGGAGGAGGACGAACCAGTGGATAAGGTGAACCTGCTGCATCTATGTGGCGGTGGATCACTCCTCAGCTTCCTAGGCTA] [+] EMBL AL934481 [ATCCCCCGAGGTTTNAACGATTATTTATGCACGCGTCTGGTCGTCGTTATCAATCATGTTAAAGTTACCCTTCGTTTTAAGTGGGAAATAGAAGATGCCTGTCCTCGTGCGCTCTATCTCACCGGCGACAAGGCACGGGAACAGTTCGCGGTGTTAGTACCCTACCTCGACTTTCATCACAAATTGGGCAATTTAGAGCGCTTAAAACAGAACATCCGGCTGCGAAAGTATTCCACTGGATTGCGACAATCTCATACAGCAGTGGGAGCTGTACCGGGACGTGGAGAAGGGGCGGGAAAAAAGGAAATCGAGCAGTACCGCGTGGACCTGCAGAAGCGTATCCAGCAGTCGTCCAGCAAGNGAGTGAACAGCAGCAAANTACAAGTCAAGGTGCCGTCCTTGCTCCNGGATGATTTAACAAATGCTCAAAGAGCAGAGCTACAAAGTGGCCGATGCATTTATTGGCAACAGCTTCCTGTCCATCCCGAACGATCTGCACGGAACGTACACCCGAAGAGAGGGCGAAATGTATTTACGAAAAACCGGTACCACCACGAGCAGGCACGAGCAATCGA CGGGCAGTNNGTCGACCCGG TCAGGAGCA ] [+] EMBL BX626979 [ gtgcgcCGCGTCTGGTCGTCGTTATCAATCATGTTAAAGTTACCCTTCGTTTTAAG GGGAAATAGAAGATGCCTGTCCTCG GCGCTCTATCTCACCGGCGACAAGGCACGGGAACAGTTCGCGGTGTTAGTACCCTACCTCGACTTCCATCACAAATTGGGCAATTTAGAGCGCTTAAAACAAAACATCCGGCTGCGAAAGTA TCCACTGGATTGCGACAATCTCATACAGCAGTGGGAGCTGTACCGGCACGTGGAGA GGC GCAAAAAGGAAATCGAGCAGTACCGCGTGGACCTGCAGAAGCGTATCCAGCAGTCGTCCAGCAAG GAG GAACAGCAGC AACT CAAGTCAAGG GCCGTCCTTGCT CGGGATGATTTAA AAATGCTCAAAGAGCAGAGCTACAAAGTGGCCGATGCATTTATTGCCAACAGCTTTCTGTCCATCCCGAACGATCTGCAC GAACGTACACCCGAAGAGGGGGCGAAATGTATTTACGAAAAACCGGTACCACCCCGAGCAGCCACGAGCAATCGACCGAGCAAT GTCGACCCGGTTCAGGAGCAGCTGGAAGAATTCGGTCCTGCATGTCTGTACATGACAGGGGATGCGGCCTGGATGGACCTTCGATTGCCGATGTACTGCAGCGAACTGTTTCNGCGCAATAAATGCATCCTGTTCTGCNATCCTGACTTTGTGCGGAGCTTTCTGGGTGAGGCGGCTATG ] [+] EMBL AL695437 [ cgagttagCGATGCATTTATTGCCAACAGCTTTCTGT CAT CCGAACGATCTGCAC GAACGTACACCCGAAGAGGGGGCGAAATGTATTTACGAAAAACCGGTACCACCCCGAGCAGCCACGAGCAATCGACCGAGCAAT GTCGACCCGGTTCAGGAGCAGCTGGAAGAATTCGGTCCTGCATGTCTGTACATGACAGGGGATGCGGCCTGGATGGACCTTCGATTGCCGATGTACTGCAGCGAACTGTTTCGGCGCAATAAATGCATCCTGTTCTGCAATCCTGACTTTGTGCGGAGCTTTCTGGTTGAGGCGGCTATGGTGAGCAAGGAGTCGCTGTTTCTGGTACAGGAGGAGGACGAACCAGTGGATAAGGTGAACCTGCTGCATCTATGTGGCGGTGGATCACTCCTCAGCTTCCTAGGCTA] consensusID : consensus_5204#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 549 fasta sequence [ATCCCCCGAGGTTAGCACGTGGAGAGGCGCAAAAAGGAAATCGAGCAGTACCGCGTGGACCTGCAGAAGCGTATCCAGCAGTCGTCCAGCAAGGAGGAACAGCAGCAACTCAAGTCAAGGGCCGTCCTTGCTCGGGATGATTTAAAAATGCTCAAAGAGCAGAGCTACAAAGTGGCCGATGCATTTATTGCCAACAGCTTTCTGTCCATCCCGAACGATCTGCACGAACGTACACCCGAAGAGGGGGCGAAATGTATTTACGAAAAACCGGTACCACCCCGAGCAGCCACGAGCAATCGACCGAGCAATGTCGACCCGGTTCAGGAGCAGCTGGAAGAATTCGGTCCTGCATGTCTGTACATGACAGGGGATGCGGCCTGGATGGACCTTCGATTGCCGATGTACTGCAGCGAACTGGTTTCGGCGCAATAAATGCATCCTGGTTCTGCAATCCTGACTTTGTGCGGAGNCTTTCTGGTTGAGGCGGCTATGGTGAGCAAGGAGTCGCTGTCTTCTGGTACAGGAGGAGGACGAACCAGTGGATAAGGT] [+] EMBL AL932364 [ATCCCCCGAGGTTAGCACGTGGAGAGGCGCAAAAAGGAAATCGAGCAGTACCGCGTGGACCTGCAGAAGCGTATCCAGCAGTCGTCCAGCAAGGAGGAACAGCAGCAACTCAAGTCAAGGGCCGTCCTTGCTCGGGATGATTTAAAAATGCTCAAAGAGCAGAGCTACAAAGTGGCCGATGCATTTATTGCCAACAGCTTTCTGTCCATCCCGAACGATCTGCACGAACGTACACCCGAAGAGGGGGCGAAATGTATTTACGAAAAACCGGTACCACCCCGAGCAGCCACGAGCAATCGACCGAGCAATGTCGACCCGGTTCAGGAGCAGCTGGAAGAATTCGGTCCTGCATGTCTGTACATGACAGGGGATGCGGCCTGGATGGACCTTCGATTGCCGATGTACTGCAGCGAACTGGTTTCGGCGCAATAAATGCATCCTGGTTCTGCAATCCTGACTTTGTGCGGAGNCTTTCTGGTTGAGGCGGCTATGGTGAGCAAGGAGTCGCTGTCTTCTGGTACAGGAGGAGGACGAACCAGTGGATAAGGT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_5204#0 ATCCCCCGAGGTTTNAACGATTATTTATGCACGCGTCTGGTCGTCGTTATCAATCATGTT 60 consensus_5204#1 ------------------------------------------------------------ consensus_5204#0 AAAGTTACCCTTCGTTTTAAGTGGGAAATAGAAGATGCCTGTCCTCGTGCGCTCTATCTC 120 consensus_5204#1 ------------------------------------------------------------ consensus_5204#0 ACCGGCGACAAGGCACGGGAACAGTTCGCGGTGTTAGTACCCTACCTCGACTTTCATCAC 180 consensus_5204#1 ------------------------------------------------------------ consensus_5204#0 AAATTGGGCAATTTAGAGCGCTTAAAACAGAACATCCGGCTGCGAAAGTATTCCACTGGA 240 consensus_5204#1 ------------------------------------------------------------ consensus_5204#0 TTGCGACAATCTCATACAGCAGTGGGAGCTGTACCGGGACGTGGAGAAGGGGCGG-GAAA 299 consensus_5204#1 ----------------------------ATCCCCCGAGGTTAGCACGTGGAGAGGCGCAA 32 * *** * * * ** * ** * ** consensus_5204#0 AAAGGAAATCGAGCAGTACCGCGTGGACCTGCAGAAGCGTATCCAGCAGTCGTCCAGCAA 359 consensus_5204#1 AAAGGAAATCGAGCAGTACCGCGTGGACCTGCAGAAGCGTATCCAGCAGTCGTCCAGCAA 92 ************************************************************ consensus_5204#0 GNGAGTGAACAGCAGCAAANTACAAGTCAAGGTGCCGTCCTTGCTCCNGGATGATTTAAC 419 consensus_5204#1 GGAG--GAACAGCAGCAACT--CAAGTCAAGG-GCCGTCCTTGCTC-GGGATGATTTAA- 145 * ************ ********** ************* *********** consensus_5204#0 AAATGCTCAAAGAGCAGAGCTACAAAGTGGCCGATGCATTTATTGCCAACAGCTTTCTGT 479 consensus_5204#1 AAATGCTCAAAGAGCAGAGCTACAAAGTGGCCGATGCATTTATTGCCAACAGCTTTCTGT 205 ************************************************************ consensus_5204#0 CCATCCCGAACGATCTGCACGAACGTACACCCGAAGAGGGGGCGAAATGTATTTACGAAA 539 consensus_5204#1 CCATCCCGAACGATCTGCACGAACGTACACCCGAAGAGGGGGCGAAATGTATTTACGAAA 265 ************************************************************ consensus_5204#0 AACCGGTACCACCCCGAGCAGCCACGAGCAATCGACCGAGCAATGTCGACCCGGTTCAGG 599 consensus_5204#1 AACCGGTACCACCCCGAGCAGCCACGAGCAATCGACCGAGCAATGTCGACCCGGTTCAGG 325 ************************************************************ consensus_5204#0 AGCAGCTGGAAGAATTCGGTCCTGCATGTCTGTACATGACAGGGGATGCGGCCTGGATGG 659 consensus_5204#1 AGCAGCTGGAAGAATTCGGTCCTGCATGTCTGTACATGACAGGGGATGCGGCCTGGATGG 385 ************************************************************ consensus_5204#0 ACCTTCGATTGCCGATGTACTGCAGCGAACTG-TTTCNGCGCAATAAATGCATCCTG-TT 717 consensus_5204#1 ACCTTCGATTGCCGATGTACTGCAGCGAACTGGTTTCGGCGCAATAAATGCATCCTGGTT 445 ******************************** **** ******************* ** consensus_5204#0 CTGCNATCCTGACTTTGTGCGGAGC-TTTCTGGGTGAGGCGGCTATGGTGAGCAAGGAGT 776 consensus_5204#1 CTGCAATCCTGACTTTGTGCGGAGNCTTTCTGGTTGAGGCGGCTATGGTGAGCAAGGAGT 505 **** ******************* ******* ************************** consensus_5204#0 CGCTGT-TTCTGGTACAGGAGGAGGACGAACCAGTGGATAAGGTGAACCTGCTGCATCTA 835 consensus_5204#1 CGCTGTCTTCTGGTACAGGAGGAGGACGAACCAGTGGATAAGGT---------------- 549 ****** ************************************* consensus_5204#0 TGTGGCGGTGGATCACTCCTCAGCTTCCTAGGCTA 870 consensus_5204#1 ----------------------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||