These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_521#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 599 fasta sequence [CCGAGAAGAAGCAGTAGCAGCAAATGGGTTAGGAAACAGGCCACACATTGTTACACTTTATTGCAATCGCTACTAGGTGGTGTGGGAGGCAACAGCGCAGTGTAGTAAGCATGTGTAGCCTCTCTCTATGTATTTATTGTCCCTCTCATCCCGGTGTGTTTGTAGTTCGTTTTCTCCCCTTTTTATATTACTTCTAAATACTAAAACTCCCTACCAGTAAGCATTCTGTGCTGCATTATAATACTGTACTGTATCGCCTCATGTTTGCATAGCCCACAATGTACTGCATGTAGTCACATTCGCCCTGTTGTTGGTTTGCACTCACCCGTCGGTCGAACATGCATAGCTCTCCATCGCCCGGGTTCAATGCAGCCCAAGGAAAGCATTGAGTTTGTGTGTTAATTTTACAGCACGTGCTTTCGTGCTGAGCAACGGAATCGGCCCTGTTGGCACGGATTGATGCAGCGAAAGTAACGAGGCGTGTGCAATTTGATAGCATAAGTGTAGGGAACCGAATGATCGAGGTTGAGAAAGATAGATAGCAAGCAAAGAACAGTAAAAGCAATAGCACAAAAAAACTAAGACAGAGTGTCAAAGCT] [+] EMBL BM646092 [CCGAGAAGAAGCAGTAGCAGCAAATGGGTTAGGAAACAGGCCACACATTGTTACACTTTATTGCAATCGCTACTAGGTGGTGTGGGAGGCAACAGCGCAGTGTAGTAAGCATGTGTAGCCTCTCTCTATGTATTTATTGTCCCTCTCATCCCGGTGTGTTTGTAGTTCGTTTTCTCCCCTTTTTATATTACTTCTAAATACTAAAACTCCCTACCAGTAAGCATTCTGTGCTGCATTATAATACTGTACTGTATCGCCTCATGTTTGCATAGCCCACAATGTACTGCATGTAGTCACATTCGCCCTGTTGTTGGTTTGCACTCACCCGTCGGTCGAACATGCATAGCTCTCCATCGCCCGGGTTCAATGCAGCCCAAGGAAAGCATTGAGTTTGTGTGTTAATTTTACAGCACGTGCTTTCGTGCTGAGCAACGGAATCGGCCCTGTTGGCACGGATTGATGCAGCGAAAGTAACGAGGCGTGTGCAATTTGATAGCATAAGTGTAGGGAACCGAATGATCGAGGTTGAGAAAGATAGATAGCAAGCAAAGAACAGTAAAAGCAATAGCACAAAAAAACTAAGACAGAGTGTCAAAGCT] consensusID : consensus_521#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 477 fasta sequence [CCGCTTCTAAATACTAAAACTCCCTACCAGTAAGCATTCTGTGCTACATTATAATACTGTACTGTATCGCCTCATGTTTGCATAGCCCACAATGTACTGCATGTAGTCACATTCGCCCTGTTGTTGGTTTGCACTCACCCGTCGGACATGCATAGCTCTCCATCGCAGCCCGGGTTCAATGCAGCCAAAGGAAAGCGAGTTTGTGTGTTAATTTTACAGCACGTGCTTCCGTGCTGAGCAACGGAATCGGCCCTGTTGGCACGGATTGATGCAGCAAAAATAACGAGGCGTGTGCAATTTGATAGCATAAGTGTAGGGAACCGAATGATCGAGGTTGAGAAAGATAGATAGAAAAAACGAGTAAAAGCACACAAAAAATCTCCCTCTCTTTTTGTTGAGACAGAGTGTCAAAGCTAAAGAAAGAAAAGTGAAGAAAAACCGTTTATCAAATAAAGATGTACCATTTGCAGGAAGCAG] [+] EMBL BM622419 [CCGCTTCTAAATACTAAAACTCCCTACCAGTAAGCATTCTGTGCTACATTATAATACTGTACTGTATCGCCTCATGTTTGCATAGCCCACAATGTACTGCATGTAGTCACATTCGCCCTGTTGTTGGTTTGCACTCACCCGTCGGACATGCATAGCTCTCCATCGCAGCCCGGGTTCAATGCAGCCAAAGGAAAGCGAGTTTGTGTGTTAATTTTACAGCACGTGCTTCCGTGCTGAGCAACGGAATCGGCCCTGTTGGCACGGATTGATGCAGCAAAAATAACGAGGCGTGTGCAATTTGATAGCATAAGTGTAGGGAACCGAATGATCGAGGTTGAGAAAGATAGATAGAAAAAACGAGTAAAAGCACACAAAAAATCTCCCTCTCTTTTTGTTGAGACAGAGTGTCAAAGCTAAAGAAAGAAAAGTGAAGAAAAACCGTTTATCAAATAAAGATGTACCATTTGCAGGAAGCAG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_521#0 CCGAGAAGAAGCAGTAGCAGCAAATGGGTTAGGAAACAGGCCACACATTGTTACACTTTA 60 consensus_521#1 ------------------------------------------------------------ consensus_521#0 TTGCAATCGCTACTAGGTGGTGTGGGAGGCAACAGCGCAGTGTAGTAAGCATGTGTAGCC 120 consensus_521#1 ------------------------------------------------------------ consensus_521#0 TCTCTCTATGTATTTATTGTCCCTCTCATCCCGGTGTGTTTGTAGTTCGTTTTCTCCCCT 180 consensus_521#1 ------------------------------------------------------------ consensus_521#0 TTTTATATTACTTCTAAATACTAAAACTCCCTACCAGTAAGCATTCTGTGCTGCATTATA 240 consensus_521#1 -------CCGCTTCTAAATACTAAAACTCCCTACCAGTAAGCATTCTGTGCTACATTATA 53 ****************************************** ******* consensus_521#0 ATACTGTACTGTATCGCCTCATGTTTGCATAGCCCACAATGTACTGCATGTAGTCACATT 300 consensus_521#1 ATACTGTACTGTATCGCCTCATGTTTGCATAGCCCACAATGTACTGCATGTAGTCACATT 113 ************************************************************ consensus_521#0 CGCCCTGTTGTTGGTTTGCACTCACCCGTCGGTCGAACATGCATAGCTCTCCATCGC--- 357 consensus_521#1 CGCCCTGTTGTTGGTTTGCACTCACCCGTCGG----ACATGCATAGCTCTCCATCGCAGC 169 ******************************** ********************* consensus_521#0 CCGGGTTCAATGCAGCCCAAGGAAAGCATTGAGTTTGTGTGTTAATTTTACAGCACGTGC 417 consensus_521#1 CCGGGTTCAATGCAGCCAAAGGAAAGC---GAGTTTGTGTGTTAATTTTACAGCACGTGC 226 ***************** ********* ****************************** consensus_521#0 TTTCGTGCTGAGCAACGGAATCGGCCCTGTTGGCACGGATTGATGCAGCGAAAGTAACGA 477 consensus_521#1 TTCCGTGCTGAGCAACGGAATCGGCCCTGTTGGCACGGATTGATGCAGCAAAAATAACGA 286 ** ********************************************** *** ****** consensus_521#0 GGCGTGTGCAATTTGATAGCATAAGTGTAGGGAACCGAATGATCGAGGTTGAGAAAGATA 537 consensus_521#1 GGCGTGTGCAATTTGATAGCATAAGTGTAGGGAACCGAATGATCGAGGTTGAGAAAGATA 346 ************************************************************ consensus_521#0 GATAGCAAGCA-------AAGAACAGTAAAAGCAATAGCACAAAAAAACTAAGACAGAGT 590 consensus_521#1 GATAGAAAAAACGAGTAAAAGCACACAAAAAATCTCCCTCTCTTTTTGTTGAGACAGAGT 406 ***** ** * *** *** **** * ********* consensus_521#0 GTCAAAGCT--------------------------------------------------- 599 consensus_521#1 GTCAAAGCTAAAGAAAGAAAAGTGAAGAAAAACCGTTTATCAAATAAAGATGTACCATTT 466 ********* consensus_521#0 ----------- consensus_521#1 GCAGGAAGCAG 477 |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||