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Anopheles gambiae
cluster # 5213 cluster # 5213       Sequences # 4       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_5213#0 length = 1088 sequences # 1  
consensus_5213#1 length = 887 sequences # 3  

consensusID : consensus_5213#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 1088
fasta sequence
                              [CAGAATCCCCGAGGTTAATATCAAAACTGACACGATAACTGTTCATACGAATTGTAATATGTTTGGTCACTTTTTTGAATCACCAGCGCATCATAGACGCGGCGACCTTACCAAACTATACATGCAGGGACATTCTTAGAGGAGCCCGTGCAGCGATATTCATCGACAACGATACGAAATGAGAATGTTCGCATGCCAACCGCTAATTTTACTAGAAGACGGAGCGGTGGCAACGAGCGCTTCAAACTAGAGAGCGTTCGACCGAGGNGATGACTATGGCGGCAACAGGACTAACCGGGAAGAAACCCAATATAAGTACACACGTTCAACTNGGNCGCATCGCTAGGAAGTAACATTGGGAGGGACAANATCGGTCACCCAANCAAGACCATGGCATTGACACTGGGTTCGGTACATAGGGAGCCCNGGAAACTNTCTTCAAAACACTCTTGGCAACAGGAAGGTTCCTTTGGAAAAATACGGNGCAAGANACATAGGGNAGGGCGTACAGGCGGCTATATCAACNACGGGAAGGGGGGGAATNTNNATCACCCCGGACGTCAACAAAAGACCCGCAAAAGACAANTGGAGCNCACAACCATATNCGGAGCGTNACNTCACAAATANNCNTANAANCCNNGCTACATATCCCCATGGNACTGGACCACCCAAAGTNATAACGTANAACACCATGGCCCGCNAAGTTGGGCCCANGTGAGCCGACACACCACAACGCGAAAAACATCACTAANAATNAGGGACTAGTGGAAAAGACCCAAAACGAACCNGAGNCCAAAGGAGGGGCCGGGCGCAACGNGCCCACAACTANGGGCGGNCACAATACAACAACCGCCAGCCGAAGCAAAANCNAACCCACACACCCACCACAAGCCNACNTAAAGCACCCCCCACANACAACGAAACNCCAGACACCCACGGCCCGAAGCGCAGACANCGACAACAATCACATCGGGCGCNAACGNCCAGACACCGCAACATCCCACCGAGGGCCACTCCAAACGNCGCACGACCGGGACCCTACAGCAGANAANATCNNACGACAACCAAGNGGACCAAAGACAGGGGGA]

[+] EMBL AL695588             [CAGAATCCCCGAGGTTAATATCAAAACTGACACGATAACTGTTCATACGAATTGTAATATGTTTGGTCACTTTTTTGAATCACCAGCGCATCATAGACGCGGCGACCTTACCAAACTATACATGCAGGGACATTCTTAGAGGAGCCCGTGCAGCGATATTCATCGACAACGATACGAAATGAGAATGTTCGCATGCCAACCGCTAATTTTACTAGAAGACGGAGCGGTGGCAACGAGCGCTTCAAACTAGAGAGCGTTCGACCGAGGNGATGACTATGGCGGCAACAGGACTAACCGGGAAGAAACCCAATATAAGTACACACGTTCAACTNGGNCGCATCGCTAGGAAGTAACATTGGGAGGGACAANATCGGTCACCCAANCAAGACCATGGCATTGACACTGGGTTCGGTACATAGGGAGCCCNGGAAACTNTCTTCAAAACACTCTTGGCAACAGGAAGGTTCCTTTGGAAAAATACGGNGCAAGANACATAGGGNAGGGCGTACAGGCGGCTATATCAACNACGGGAAGGGGGGGAATNTNNATCACCCCGGACGTCAACAAAAGACCCGCAAAAGACAANTGGAGCNCACAACCATATNCGGAGCGTNACNTCACAAATANNCNTANAANCCNNGCTACATATCCCCATGGNACTGGACCACCCAAAGTNATAACGTANAACACCATGGCCCGCNAAGTTGGGCCCANGTGAGCCGACACACCACAACGCGAAAAACATCACTAANAATNAGGGACTAGTGGAAAAGACCCAAAACGAACCNGAGNCCAAAGGAGGGGCCGGGCGCAACGNGCCCACAACTANGGGCGGNCACAATACAACAACCGCCAGCCGAAGCAAAANCNAACCCACACACCCACCACAAGCCNACNTAAAGCACCCCCCACANACAACGAAACNCCAGACACCCACGGCCCGAAGCGCAGACANCGACAACAATCACATCGGGCGCNAACGNCCAGACACCGCAACATCCCACCGAGGGCCACTCCAAACGNCGCACGACCGGGACCCTACAGCAGANAANATCNNACGACAACCAAGNGGACCAAAGACAGGGGGA]


>consensus_5213#0 CAGAATCCCCGAGGTTAATATCAAAACTGACACGATAACTGTTCATACGAATTGTAATAT GTTTGGTCACTTTTTTGAATCACCAGCGCATCATAGACGCGGCGACCTTACCAAACTATA CATGCAGGGACATTCTTAGAGGAGCCCGTGCAGCGATATTCATCGACAACGATACGAAAT GAGAATGTTCGCATGCCAACCGCTAATTTTACTAGAAGACGGAGCGGTGGCAACGAGCGC TTCAAACTAGAGAGCGTTCGACCGAGGNGATGACTATGGCGGCAACAGGACTAACCGGGA AGAAACCCAATATAAGTACACACGTTCAACTNGGNCGCATCGCTAGGAAGTAACATTGGG AGGGACAANATCGGTCACCCAANCAAGACCATGGCATTGACACTGGGTTCGGTACATAGG GAGCCCNGGAAACTNTCTTCAAAACACTCTTGGCAACAGGAAGGTTCCTTTGGAAAAATA CGGNGCAAGANACATAGGGNAGGGCGTACAGGCGGCTATATCAACNACGGGAAGGGGGGG AATNTNNATCACCCCGGACGTCAACAAAAGACCCGCAAAAGACAANTGGAGCNCACAACC ATATNCGGAGCGTNACNTCACAAATANNCNTANAANCCNNGCTACATATCCCCATGGNAC TGGACCACCCAAAGTNATAACGTANAACACCATGGCCCGCNAAGTTGGGCCCANGTGAGC CGACACACCACAACGCGAAAAACATCACTAANAATNAGGGACTAGTGGAAAAGACCCAAA ACGAACCNGAGNCCAAAGGAGGGGCCGGGCGCAACGNGCCCACAACTANGGGCGGNCACA ATACAACAACCGCCAGCCGAAGCAAAANCNAACCCACACACCCACCACAAGCCNACNTAA AGCACCCCCCACANACAACGAAACNCCAGACACCCACGGCCCGAAGCGCAGACANCGACA ACAATCACATCGGGCGCNAACGNCCAGACACCGCAACATCCCACCGAGGGCCACTCCAAA CGNCGCACGACCGGGACCCTACAGCAGANAANATCNNACGACAACCAAGNGGACCAAAGA CAGGGGGA



consensusID : consensus_5213#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 887
fasta sequence
                              [AAGAATCCCCCCGAGGTTTTCACAGGCAAGACATCTCAGTTGATCATAGTCAAATATCAAAACTGACACGATAATGTTCATACGAATTGTAATATGTTTGGTCACTTTTTTGAATCACCAGCGCATCATAGACGCGGCGACCTTACCAAACTATCATGCAGGGACATTCTTAGAGGAGCCCGTGCAGCGATATTCATCGAAAGATAGAAATGAGAATGTTCGCATGCCAACCGCTAATTTTATAGAAGACGGAGCGGTGGAACGAGCGCTTCAAATAGAGAGCGTTCGACGAGAGATGAATATGGCGGCAACGGCTACCGGAGACCCATTAGTCGACGTCACTGGCGATGCTGAGTACATGGAGGAAATGTACAAAAGCCTGCATGAATGGTTGTATGGACCCGACTTCTCAACCTCTGAAGAGTCTGAATCGCAGATTGTGTTGGTTACAGAGGATTTCCCGCTAAAGCCAGATGGCACTCGGGATTTTTCTTCGTTTCCTGGCGCCCATTTATTAGCTGCGAGTGCTGGAACACTACTTATTGGTGGAGCAGTCGGAGGCGGCGCATGGTATTACCGAAAACAAAAAATACCCAA-ATCACTGTTGAAGA-TTGGAAGAAGATCCGGCTATGATTGTCTCGGATCACACAGTAGAGGATTCTTCTCAGAACATCGTGAGTTGAGTCGCAGACGAAGTAACACATTAACATCTCGCTACAAGAATAATCGANATGTTTAGAACTAGAACTTTTAAGCTGCGTTTTTAAGGAGCGTCATGACTGGACACTGCAGTCCATCGAGGTTTCAACCTTTTAGAGCGCTCAAGACCCACTCAGGGTTTATAAGGTGCCGCAAACACTGTAAAAGCATAAAATTCATGGNAAAAA]

[+] EMBL AL930319             [AAGAATCCCCCCGAGGTTTTCACAGGCAAGACATCTCAGTTGATCATAGTCAAATATCAAAACTGACACGATAATGTTCATACGAATTGTAATATGTTTGGTCACTTTTTTGAATCACCAGCGCATCATAGACGCGGCGACCTTACCAAACTATCATGCAGGGACATTCTTAGAGGAGCCCGTGCAGCGATATTCATCGAAAGATAGAAATGAGAATGTTCGCATGCCAACCGCTAATTTTATAGAAGACGGAGCGGTGGAACGAGCGCTTCAAATAGAGAGCGTTCGACGAGAGATGAATATGGCGGCAACGGCTACCGGAGACCCATTAGTCGACGTCACTGGCGATGCTGAGTACATGGAGGAAATGTACAAAAGCCTGCATGAATGGTTGTATGGACCCGACTTCTCAACCTCTGAAGAGTCTGAATCGCAGATTGTGTTGGTTACAGAGGATTTCCCGCTAAAGCCAGATGGCACTCGGGATTTTTCTTCGTTTCCTGGCGCCCATTTATTAGCTGCGAGTGCTGGAACACTACTTATTGGTGGAGCAGTCGGAGGCGGCGCATGGTATTACCGAAAACAAAAAATACCCAA ATCACTGTTGAAGA TTGGAAGAAGATCCGGCTATGATTGTCTCGGATCACACAGTAGAGGATTCTTCTCAGAACATCGTGAGTTGAGTCGCAGACGAAGTAACACATTAACATCTCGCTACAAGAATAATCGANATGTTTAGAACTAGAACTTTTAAGCTGCGTTTTTAAGGAGCGTCATGACTGGACACTGCAGTCCATCGAGGTTTCAACCTTTTAGAGCGCTCAAGACCCACTCAGGGTTTATAAGGTGCCGCAAACACTGTAAAAGCATAAAATTCATGGNAAAAA]
[+] EMBL BM621550             [                                                      ccgCAAAACTGACACGATAATGTTCATACGAATTGTAATATGTTTGGTCACTTTTTTGAATCACCAGCGCATCATAGACGCGGCGACCTTACCAAACTATCATGCAGGGACATTCTTAGAGGAGCCCGTGCAGCGATATTCATCGAAAGATAGAAATGAGAATGTTCGCATGCCAACCGCTAATTTTATAGAAGACGGAGCGGTGGAACGAGCGCTTCAAATAGAGAGCGTTCGACGAGAGATGAATATGGCGGCAACGGCTACCGGAGACCCATTAGTCGACGTCACTGGCGATGCTGAGTACATGGAGGAAATGTACAAAAGCCTGCATGAATGGTTGTATGGACCCGACTTCTCAACCTCTGAAGAGTCTGAATCGCAGATTGTGTTGGTTACAGAGGATTTCCCGCTAAAGCCAGATGGCACTCGGGATTTTTCTTCGTTTCCTGGCGCCCATTTATTAGCTGCGAGTGCTGGAACACTACTTATTGGTGGAGCAGTCGGAGGCGGCGCATGGTATTACCGAAAACAAAAAATACCCAACATCACTGTTGAAGATTTGGAAGAAGATCCGGCTATGATTGTCTCGGATCACACAGTAGAGGATTCTTCTCAGAACATCGTGAGTTGAGTCGCAGACGAA TAA A ATTAACATCTCGCTACAAGAATAATCGA ATGTTTAGA                                                                                                                                                   ]
[+] EMBL BM579752             [                                                                                                                                                                                                                           TCGCATGCCAACCGCTAATTTTATAGAAGACGGAGCGGTGGAACGAGCGCTTCAAATACAGAGCGTTCGACTAGAGATGAATATGGCGGCAACGGCTACCGGAGACCCATTAGTCGACGTCACTGGCGATGCTGAGTACATGGAGGAAATGTACGAAAGCCTGCATGAATGGTTGTATGGACCCGACTTCTCAACCTCTGAAGAGACTGAATCGCAGATTGTGGTGGTTACAGAGGATTTCCCGCTAAAGCCAGATGGCACTCGGGATTTTTCTTCGCTTCCTGGCGCCCATTTATTAGC                                                                                                                                                                                                                                                                                                                                                                                  ]


>consensus_5213#1 AAGAATCCCCCCGAGGTTTTCACAGGCAAGACATCTCAGTTGATCATAGTCAAATATCAA AACTGACACGATAATGTTCATACGAATTGTAATATGTTTGGTCACTTTTTTGAATCACCA GCGCATCATAGACGCGGCGACCTTACCAAACTATCATGCAGGGACATTCTTAGAGGAGCC CGTGCAGCGATATTCATCGAAAGATAGAAATGAGAATGTTCGCATGCCAACCGCTAATTT TATAGAAGACGGAGCGGTGGAACGAGCGCTTCAAATAGAGAGCGTTCGACGAGAGATGAA TATGGCGGCAACGGCTACCGGAGACCCATTAGTCGACGTCACTGGCGATGCTGAGTACAT GGAGGAAATGTACAAAAGCCTGCATGAATGGTTGTATGGACCCGACTTCTCAACCTCTGA AGAGTCTGAATCGCAGATTGTGTTGGTTACAGAGGATTTCCCGCTAAAGCCAGATGGCAC TCGGGATTTTTCTTCGTTTCCTGGCGCCCATTTATTAGCTGCGAGTGCTGGAACACTACT TATTGGTGGAGCAGTCGGAGGCGGCGCATGGTATTACCGAAAACAAAAAATACCCAAATC ACTGTTGAAGATTGGAAGAAGATCCGGCTATGATTGTCTCGGATCACACAGTAGAGGATT CTTCTCAGAACATCGTGAGTTGAGTCGCAGACGAAGTAACACATTAACATCTCGCTACAA GAATAATCGANATGTTTAGAACTAGAACTTTTAAGCTGCGTTTTTAAGGAGCGTCATGAC TGGACACTGCAGTCCATCGAGGTTTCAACCTTTTAGAGCGCTCAAGACCCACTCAGGGTT TATAAGGTGCCGCAAACACTGTAAAAGCATAAAATTCATGGNAAAAA



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_5213#0      ------------------------------------CAGAATCCCCGAGGTTAATATCAA 24
consensus_5213#1      AAGAATCCCCCCGAGGTTTTCACAGGCAAGACATCTCAGTTGATCATAGTCAAATATCAA 60
                                                          ***     *  **   ********

consensus_5213#0      AACTGACACGATAACTGTTCATACGAATTGTAATATGTTTGGTCACTTTTTTGAATCACC 84
consensus_5213#1      AACTGACACGATAA-TGTTCATACGAATTGTAATATGTTTGGTCACTTTTTTGAATCACC 119
                      ************** *********************************************

consensus_5213#0      AGCGCATCATAGACGCGGCGACCTTACCAAACTATACATGCAGGGACATTCTTAGAGGAG 144
consensus_5213#1      AGCGCATCATAGACGCGGCGACCTTACCAAACTAT-CATGCAGGGACATTCTTAGAGGAG 178
                      *********************************** ************************

consensus_5213#0      CCCGTGCAGCGATATTCATCGACAACGATACGAAATGAGAATGTTCGCATGCCAACCGCT 204
consensus_5213#1      CCCGTGCAGCGATATTCATCG--AAAGATA-GAAATGAGAATGTTCGCATGCCAACCGCT 235
                      *********************  ** **** *****************************

consensus_5213#0      AATTTTACTAGAAGACGGAGCGGTGGCAACGAGCGCTTCAAACTAGAGAGCGTTCGACCG 264
consensus_5213#1      AATTTTA-TAGAAGACGGAGCGGTGG-AACGAGCGCTTCAAA-TAGAGAGCGTTCGAC-- 290
                      ******* ****************** *************** ***************  

consensus_5213#0      AGGNGATGACTATGGCGGCAACAGGACTAACCGGGAAGAAACCCAATATAAGTACACACG 324
consensus_5213#1      GAGAGATGAATATGGCGGCAAC--GGCTACC-----GGAGACCCATTA-----------G 332
                        * ***** ************  * *** *      ** ***** **           *

consensus_5213#0      TTCAACTNGGNCGCATCGCTAGGAAGTAACATTGGGAGGGACAANATCGGTCACCCAANC 384
consensus_5213#1      TCGACGTCACTGGCGATGCTGAGT----ACAT--GGAGGAAATGTACAAA--AGCCTGCA 384
                      *  *  *     **   ***  *     ****  ***** *    *      * **    

consensus_5213#0      AAGACCATGGCATTGACACTGGGTTCGGTACATAGGGAGCCCNGGAAACTNTCTTCAAAA 444
consensus_5213#1      TGAATGGTTGTATGGAC-CCGACTTCTCAACCT------CTGAAGAGTCTGAATCGCAGA 437
                         *   * * ** *** * *  ***   ** *      *    **  **   *   * *

consensus_5213#0      CACTCTTGGCAACAGGAAGGTTCCTTTGGAAAAATACGGNGCAAGANACATAGGGNAGGG 504
consensus_5213#1      TTGTGTTGGTTACAG-AGGATTTCCCGCTAAAGCCAGATGGCACTCGGGATTTTTCTTCG 496
                         * ****  **** * * ** *     ***   *    ***      **        *

consensus_5213#0      CGTACAGGCGGCTATATCAACNACGGGAAGGGGGGGAATNTNNATCACCCCGGACGTCAA 564
consensus_5213#1      TTTCCTGGCGCCCAT-TTATTAGCTGCGAGTGCTGGAACACTACTTATTGGTGGAGCAGT 555
                        * * **** * ** * *    * *  ** *  ****      * *     *  *    

consensus_5213#0      CAAAAGACCCGCAAAAGACAANTGGAGCNCACAACCATATNCGGAGCGTNACNTCACAAA 624
consensus_5213#1      CGGAGGCGGCGCATGGTATTACCGAAAACAAAAA--ATACCCAAA---TCACTGTTGAAG 610
                      *  * *   ****    *  *  * *    * **  ***  *  *   * **     ** 

consensus_5213#0      TANNCNTANAANCCNNGCTACATATCCCCATGGNACTGGACCACCCAAAGTNATAACGTA 684
consensus_5213#1      ATTGGAAGAAGATCCGGCTATGATTGTC--TCGGATCACACAGTAGAGGATTCTT-CTCA 667
                               *   *  ****    *  *  * * *    **     *   *  *  *  *

consensus_5213#0      NAACACCATGGCCCGCNAAGTTG-GGCCCANGTGAGCCGACA-CACCACAACGCGAAAAA 742
consensus_5213#1      GAACATCGTGA---GTTGAGTCGCAGACGAAGTAACACATTAACATCTCGCTACAAGAAT 724
                       **** * **    *   *** *  * * * ** *  *   * ** * *    * * ** 

consensus_5213#0      CATCACTAANAATNAGGGACTAGTGGAAAAGACCCAAAACGAACCNGAGNCCAAAGGAGG 802
consensus_5213#1      AATCG--ANATGTTTAGAACTAG-----AACTTTTAAGCTGCGTTTTTAAGGAGCGTCAT 777
                       ***   *    *   * *****     **     **   *           *  *    

consensus_5213#0      GGCCGGGCGCAACGNGCCCACAA--CTANGGGCGGNCACAATACAACAACCGCCAGCCGA 860
consensus_5213#1      GACTGGACACTGCAGTCCATCGAGGTTTCAACCTTTTAGAGCGCT-CAAGACCCACTCAG 836
                      * * ** * *  *   **  * *   *     *    * *   *  ***   ***  *  

consensus_5213#0      AGCAAAANCNAACCCACACACCCACCACAAGCCNACNTAAAGCACCCCCCACANACAACG 920
consensus_5213#1      GGTTTATAAGGTGCCGCAAAC--ACTGTAAA--AGCATAAAATTCATGGNAAAAA----- 887
                       *   *       ** ** **  **   **     * ****   *     * * *     

consensus_5213#0      AAACNCCAGACACCCACGGCCCGAAGCGCAGACANCGACAACAATCACATCGGGCGCNAA 980
consensus_5213#1      ------------------------------------------------------------
                                                                                  

consensus_5213#0      CGNCCAGACACCGCAACATCCCACCGAGGGCCACTCCAAACGNCGCACGACCGGGACCCT 1040
consensus_5213#1      ------------------------------------------------------------
                                                                                  

consensus_5213#0      ACAGCAGANAANATCNNACGACAACCAAGNGGACCAAAGACAGGGGGA 1088
consensus_5213#1      ------------------------------------------------
                                                                      




Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner    (hubert.wassner@noos.fr)