These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5213#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1088 fasta sequence [CAGAATCCCCGAGGTTAATATCAAAACTGACACGATAACTGTTCATACGAATTGTAATATGTTTGGTCACTTTTTTGAATCACCAGCGCATCATAGACGCGGCGACCTTACCAAACTATACATGCAGGGACATTCTTAGAGGAGCCCGTGCAGCGATATTCATCGACAACGATACGAAATGAGAATGTTCGCATGCCAACCGCTAATTTTACTAGAAGACGGAGCGGTGGCAACGAGCGCTTCAAACTAGAGAGCGTTCGACCGAGGNGATGACTATGGCGGCAACAGGACTAACCGGGAAGAAACCCAATATAAGTACACACGTTCAACTNGGNCGCATCGCTAGGAAGTAACATTGGGAGGGACAANATCGGTCACCCAANCAAGACCATGGCATTGACACTGGGTTCGGTACATAGGGAGCCCNGGAAACTNTCTTCAAAACACTCTTGGCAACAGGAAGGTTCCTTTGGAAAAATACGGNGCAAGANACATAGGGNAGGGCGTACAGGCGGCTATATCAACNACGGGAAGGGGGGGAATNTNNATCACCCCGGACGTCAACAAAAGACCCGCAAAAGACAANTGGAGCNCACAACCATATNCGGAGCGTNACNTCACAAATANNCNTANAANCCNNGCTACATATCCCCATGGNACTGGACCACCCAAAGTNATAACGTANAACACCATGGCCCGCNAAGTTGGGCCCANGTGAGCCGACACACCACAACGCGAAAAACATCACTAANAATNAGGGACTAGTGGAAAAGACCCAAAACGAACCNGAGNCCAAAGGAGGGGCCGGGCGCAACGNGCCCACAACTANGGGCGGNCACAATACAACAACCGCCAGCCGAAGCAAAANCNAACCCACACACCCACCACAAGCCNACNTAAAGCACCCCCCACANACAACGAAACNCCAGACACCCACGGCCCGAAGCGCAGACANCGACAACAATCACATCGGGCGCNAACGNCCAGACACCGCAACATCCCACCGAGGGCCACTCCAAACGNCGCACGACCGGGACCCTACAGCAGANAANATCNNACGACAACCAAGNGGACCAAAGACAGGGGGA] [+] EMBL AL695588 [CAGAATCCCCGAGGTTAATATCAAAACTGACACGATAACTGTTCATACGAATTGTAATATGTTTGGTCACTTTTTTGAATCACCAGCGCATCATAGACGCGGCGACCTTACCAAACTATACATGCAGGGACATTCTTAGAGGAGCCCGTGCAGCGATATTCATCGACAACGATACGAAATGAGAATGTTCGCATGCCAACCGCTAATTTTACTAGAAGACGGAGCGGTGGCAACGAGCGCTTCAAACTAGAGAGCGTTCGACCGAGGNGATGACTATGGCGGCAACAGGACTAACCGGGAAGAAACCCAATATAAGTACACACGTTCAACTNGGNCGCATCGCTAGGAAGTAACATTGGGAGGGACAANATCGGTCACCCAANCAAGACCATGGCATTGACACTGGGTTCGGTACATAGGGAGCCCNGGAAACTNTCTTCAAAACACTCTTGGCAACAGGAAGGTTCCTTTGGAAAAATACGGNGCAAGANACATAGGGNAGGGCGTACAGGCGGCTATATCAACNACGGGAAGGGGGGGAATNTNNATCACCCCGGACGTCAACAAAAGACCCGCAAAAGACAANTGGAGCNCACAACCATATNCGGAGCGTNACNTCACAAATANNCNTANAANCCNNGCTACATATCCCCATGGNACTGGACCACCCAAAGTNATAACGTANAACACCATGGCCCGCNAAGTTGGGCCCANGTGAGCCGACACACCACAACGCGAAAAACATCACTAANAATNAGGGACTAGTGGAAAAGACCCAAAACGAACCNGAGNCCAAAGGAGGGGCCGGGCGCAACGNGCCCACAACTANGGGCGGNCACAATACAACAACCGCCAGCCGAAGCAAAANCNAACCCACACACCCACCACAAGCCNACNTAAAGCACCCCCCACANACAACGAAACNCCAGACACCCACGGCCCGAAGCGCAGACANCGACAACAATCACATCGGGCGCNAACGNCCAGACACCGCAACATCCCACCGAGGGCCACTCCAAACGNCGCACGACCGGGACCCTACAGCAGANAANATCNNACGACAACCAAGNGGACCAAAGACAGGGGGA] consensusID : consensus_5213#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 887 fasta sequence [AAGAATCCCCCCGAGGTTTTCACAGGCAAGACATCTCAGTTGATCATAGTCAAATATCAAAACTGACACGATAATGTTCATACGAATTGTAATATGTTTGGTCACTTTTTTGAATCACCAGCGCATCATAGACGCGGCGACCTTACCAAACTATCATGCAGGGACATTCTTAGAGGAGCCCGTGCAGCGATATTCATCGAAAGATAGAAATGAGAATGTTCGCATGCCAACCGCTAATTTTATAGAAGACGGAGCGGTGGAACGAGCGCTTCAAATAGAGAGCGTTCGACGAGAGATGAATATGGCGGCAACGGCTACCGGAGACCCATTAGTCGACGTCACTGGCGATGCTGAGTACATGGAGGAAATGTACAAAAGCCTGCATGAATGGTTGTATGGACCCGACTTCTCAACCTCTGAAGAGTCTGAATCGCAGATTGTGTTGGTTACAGAGGATTTCCCGCTAAAGCCAGATGGCACTCGGGATTTTTCTTCGTTTCCTGGCGCCCATTTATTAGCTGCGAGTGCTGGAACACTACTTATTGGTGGAGCAGTCGGAGGCGGCGCATGGTATTACCGAAAACAAAAAATACCCAA-ATCACTGTTGAAGA-TTGGAAGAAGATCCGGCTATGATTGTCTCGGATCACACAGTAGAGGATTCTTCTCAGAACATCGTGAGTTGAGTCGCAGACGAAGTAACACATTAACATCTCGCTACAAGAATAATCGANATGTTTAGAACTAGAACTTTTAAGCTGCGTTTTTAAGGAGCGTCATGACTGGACACTGCAGTCCATCGAGGTTTCAACCTTTTAGAGCGCTCAAGACCCACTCAGGGTTTATAAGGTGCCGCAAACACTGTAAAAGCATAAAATTCATGGNAAAAA] [+] EMBL AL930319 [AAGAATCCCCCCGAGGTTTTCACAGGCAAGACATCTCAGTTGATCATAGTCAAATATCAAAACTGACACGATAATGTTCATACGAATTGTAATATGTTTGGTCACTTTTTTGAATCACCAGCGCATCATAGACGCGGCGACCTTACCAAACTATCATGCAGGGACATTCTTAGAGGAGCCCGTGCAGCGATATTCATCGAAAGATAGAAATGAGAATGTTCGCATGCCAACCGCTAATTTTATAGAAGACGGAGCGGTGGAACGAGCGCTTCAAATAGAGAGCGTTCGACGAGAGATGAATATGGCGGCAACGGCTACCGGAGACCCATTAGTCGACGTCACTGGCGATGCTGAGTACATGGAGGAAATGTACAAAAGCCTGCATGAATGGTTGTATGGACCCGACTTCTCAACCTCTGAAGAGTCTGAATCGCAGATTGTGTTGGTTACAGAGGATTTCCCGCTAAAGCCAGATGGCACTCGGGATTTTTCTTCGTTTCCTGGCGCCCATTTATTAGCTGCGAGTGCTGGAACACTACTTATTGGTGGAGCAGTCGGAGGCGGCGCATGGTATTACCGAAAACAAAAAATACCCAA ATCACTGTTGAAGA TTGGAAGAAGATCCGGCTATGATTGTCTCGGATCACACAGTAGAGGATTCTTCTCAGAACATCGTGAGTTGAGTCGCAGACGAAGTAACACATTAACATCTCGCTACAAGAATAATCGANATGTTTAGAACTAGAACTTTTAAGCTGCGTTTTTAAGGAGCGTCATGACTGGACACTGCAGTCCATCGAGGTTTCAACCTTTTAGAGCGCTCAAGACCCACTCAGGGTTTATAAGGTGCCGCAAACACTGTAAAAGCATAAAATTCATGGNAAAAA] [+] EMBL BM621550 [ ccgCAAAACTGACACGATAATGTTCATACGAATTGTAATATGTTTGGTCACTTTTTTGAATCACCAGCGCATCATAGACGCGGCGACCTTACCAAACTATCATGCAGGGACATTCTTAGAGGAGCCCGTGCAGCGATATTCATCGAAAGATAGAAATGAGAATGTTCGCATGCCAACCGCTAATTTTATAGAAGACGGAGCGGTGGAACGAGCGCTTCAAATAGAGAGCGTTCGACGAGAGATGAATATGGCGGCAACGGCTACCGGAGACCCATTAGTCGACGTCACTGGCGATGCTGAGTACATGGAGGAAATGTACAAAAGCCTGCATGAATGGTTGTATGGACCCGACTTCTCAACCTCTGAAGAGTCTGAATCGCAGATTGTGTTGGTTACAGAGGATTTCCCGCTAAAGCCAGATGGCACTCGGGATTTTTCTTCGTTTCCTGGCGCCCATTTATTAGCTGCGAGTGCTGGAACACTACTTATTGGTGGAGCAGTCGGAGGCGGCGCATGGTATTACCGAAAACAAAAAATACCCAACATCACTGTTGAAGATTTGGAAGAAGATCCGGCTATGATTGTCTCGGATCACACAGTAGAGGATTCTTCTCAGAACATCGTGAGTTGAGTCGCAGACGAA TAA A ATTAACATCTCGCTACAAGAATAATCGA ATGTTTAGA ] [+] EMBL BM579752 [ TCGCATGCCAACCGCTAATTTTATAGAAGACGGAGCGGTGGAACGAGCGCTTCAAATACAGAGCGTTCGACTAGAGATGAATATGGCGGCAACGGCTACCGGAGACCCATTAGTCGACGTCACTGGCGATGCTGAGTACATGGAGGAAATGTACGAAAGCCTGCATGAATGGTTGTATGGACCCGACTTCTCAACCTCTGAAGAGACTGAATCGCAGATTGTGGTGGTTACAGAGGATTTCCCGCTAAAGCCAGATGGCACTCGGGATTTTTCTTCGCTTCCTGGCGCCCATTTATTAGC ] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_5213#0 ------------------------------------CAGAATCCCCGAGGTTAATATCAA 24 consensus_5213#1 AAGAATCCCCCCGAGGTTTTCACAGGCAAGACATCTCAGTTGATCATAGTCAAATATCAA 60 *** * ** ******** consensus_5213#0 AACTGACACGATAACTGTTCATACGAATTGTAATATGTTTGGTCACTTTTTTGAATCACC 84 consensus_5213#1 AACTGACACGATAA-TGTTCATACGAATTGTAATATGTTTGGTCACTTTTTTGAATCACC 119 ************** ********************************************* consensus_5213#0 AGCGCATCATAGACGCGGCGACCTTACCAAACTATACATGCAGGGACATTCTTAGAGGAG 144 consensus_5213#1 AGCGCATCATAGACGCGGCGACCTTACCAAACTAT-CATGCAGGGACATTCTTAGAGGAG 178 *********************************** ************************ consensus_5213#0 CCCGTGCAGCGATATTCATCGACAACGATACGAAATGAGAATGTTCGCATGCCAACCGCT 204 consensus_5213#1 CCCGTGCAGCGATATTCATCG--AAAGATA-GAAATGAGAATGTTCGCATGCCAACCGCT 235 ********************* ** **** ***************************** consensus_5213#0 AATTTTACTAGAAGACGGAGCGGTGGCAACGAGCGCTTCAAACTAGAGAGCGTTCGACCG 264 consensus_5213#1 AATTTTA-TAGAAGACGGAGCGGTGG-AACGAGCGCTTCAAA-TAGAGAGCGTTCGAC-- 290 ******* ****************** *************** *************** consensus_5213#0 AGGNGATGACTATGGCGGCAACAGGACTAACCGGGAAGAAACCCAATATAAGTACACACG 324 consensus_5213#1 GAGAGATGAATATGGCGGCAAC--GGCTACC-----GGAGACCCATTA-----------G 332 * ***** ************ * *** * ** ***** ** * consensus_5213#0 TTCAACTNGGNCGCATCGCTAGGAAGTAACATTGGGAGGGACAANATCGGTCACCCAANC 384 consensus_5213#1 TCGACGTCACTGGCGATGCTGAGT----ACAT--GGAGGAAATGTACAAA--AGCCTGCA 384 * * * ** *** * **** ***** * * * ** consensus_5213#0 AAGACCATGGCATTGACACTGGGTTCGGTACATAGGGAGCCCNGGAAACTNTCTTCAAAA 444 consensus_5213#1 TGAATGGTTGTATGGAC-CCGACTTCTCAACCT------CTGAAGAGTCTGAATCGCAGA 437 * * * ** *** * * *** ** * * ** ** * * * consensus_5213#0 CACTCTTGGCAACAGGAAGGTTCCTTTGGAAAAATACGGNGCAAGANACATAGGGNAGGG 504 consensus_5213#1 TTGTGTTGGTTACAG-AGGATTTCCCGCTAAAGCCAGATGGCACTCGGGATTTTTCTTCG 496 * **** **** * * ** * *** * *** ** * consensus_5213#0 CGTACAGGCGGCTATATCAACNACGGGAAGGGGGGGAATNTNNATCACCCCGGACGTCAA 564 consensus_5213#1 TTTCCTGGCGCCCAT-TTATTAGCTGCGAGTGCTGGAACACTACTTATTGGTGGAGCAGT 555 * * **** * ** * * * * ** * **** * * * * consensus_5213#0 CAAAAGACCCGCAAAAGACAANTGGAGCNCACAACCATATNCGGAGCGTNACNTCACAAA 624 consensus_5213#1 CGGAGGCGGCGCATGGTATTACCGAAAACAAAAA--ATACCCAAA---TCACTGTTGAAG 610 * * * **** * * * * * ** *** * * * ** ** consensus_5213#0 TANNCNTANAANCCNNGCTACATATCCCCATGGNACTGGACCACCCAAAGTNATAACGTA 684 consensus_5213#1 ATTGGAAGAAGATCCGGCTATGATTGTC--TCGGATCACACAGTAGAGGATTCTT-CTCA 667 * * **** * * * * * ** * * * * * consensus_5213#0 NAACACCATGGCCCGCNAAGTTG-GGCCCANGTGAGCCGACA-CACCACAACGCGAAAAA 742 consensus_5213#1 GAACATCGTGA---GTTGAGTCGCAGACGAAGTAACACATTAACATCTCGCTACAAGAAT 724 **** * ** * *** * * * * ** * * * ** * * * * ** consensus_5213#0 CATCACTAANAATNAGGGACTAGTGGAAAAGACCCAAAACGAACCNGAGNCCAAAGGAGG 802 consensus_5213#1 AATCG--ANATGTTTAGAACTAG-----AACTTTTAAGCTGCGTTTTTAAGGAGCGTCAT 777 *** * * * ***** ** ** * * * consensus_5213#0 GGCCGGGCGCAACGNGCCCACAA--CTANGGGCGGNCACAATACAACAACCGCCAGCCGA 860 consensus_5213#1 GACTGGACACTGCAGTCCATCGAGGTTTCAACCTTTTAGAGCGCT-CAAGACCCACTCAG 836 * * ** * * * ** * * * * * * * *** *** * consensus_5213#0 AGCAAAANCNAACCCACACACCCACCACAAGCCNACNTAAAGCACCCCCCACANACAACG 920 consensus_5213#1 GGTTTATAAGGTGCCGCAAAC--ACTGTAAA--AGCATAAAATTCATGGNAAAAA----- 887 * * ** ** ** ** ** * **** * * * * consensus_5213#0 AAACNCCAGACACCCACGGCCCGAAGCGCAGACANCGACAACAATCACATCGGGCGCNAA 980 consensus_5213#1 ------------------------------------------------------------ consensus_5213#0 CGNCCAGACACCGCAACATCCCACCGAGGGCCACTCCAAACGNCGCACGACCGGGACCCT 1040 consensus_5213#1 ------------------------------------------------------------ consensus_5213#0 ACAGCAGANAANATCNNACGACAACCAAGNGGACCAAAGACAGGGGGA 1088 consensus_5213#1 ------------------------------------------------ |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||