These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5214#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1286 fasta sequence [CCGCGAATGTACAGTGTAGCAAATTGGAACCCACTTTGACAGTAAAGATCGTGCGGGATTGATTGTGTGAGTGTGATTTACAGTTAATAGTCCAATTTAAACACTGGCAACCGGTGTGCCAGATACTCTCCGGAACTCGTTTATGCGCGCAAGGCAGCCCGCGCTTGTTCATTAGAGTATGTTGTATATTCTAGTAAAAAAAAAAACAAAGTCACAAACCACACGTGCATATACACCTTAGACAGAAGACAAACAGACTATTAAGATGCTACGCTAAACAAAAACACAAAACACATGCAAACGTACTCTAGTGGATAGGGAATGATCGATTTTTCAGTTCCTGATCTTTTGTGGTTTTACACAAAAAGAACGTGCAGGAGGATGAGAAAAAAGGAGTAGTAAAATGCTGTAAAATTAGTAGCGAAATTATTATTACCACTTACCGTAAATGCCGAGCTGCCCATCGGCTCGGACTGTTCGCGCTCGGAACGTTAACAAACAAACATACTTTGCGATTTGCATCCATGCACTGTAACCGCTCCAATGCTCGCAAATGGTGGTGTTTTCATACTCGCGAGTCTAGCAAATGAAGGACATAGGGAGGGA-AGGGACAGTTT-CGTGCCAGGGAGGAGGCCATTT-GTTTACGATGTAAACTGGAATGACGGTTAGCCGGAAGCTCATACACACGGACACATTCTCGCAGAAGCGCGTGTTGTGCCAGCGTGGCTCGATGATGGTGGCTATTTGCCATCAAGTCGGCACAAATGCATCATGTAATTTTATAAGCATCCGATGTTACTCTGCATATATACAATAGGTAGCTTATTTTGTTTCCGCTCAGCAAAGTGACGTTGGTGACGATCACACTAGCGAGCAGATTGTTTTAACTAATGTACTAACGATATAACCGCCTCTTTGTTACTTTGCGCTACGTATGCAAACCCTTTCCCCAAACCCTGTTGATAAGTTATATCCCCTGTGCGCTTTTGGGTGGAACTATTTGCTGTTTGGAAAGAAGTTTAACCATTTATACCACAAGTTTGCCAACTGCGCTTACCCCTGGGACAGCGTTTCAGTCACGGACGCTTTTTCACGGGCACGTGCAGCAGTCAAGGCAAGAATAATTGNACTCGTTTTTCTTTATTTCCTTTCTTAAACCCAATGGGTTGTTGGTGAATGGTATACATTTTGTAAAAATATTCTATTTATTTCGTAGGAAACGATTCTGCTACTGTTCAGCGTTTGCGAAACGTTCACACACTTTTATCCTCGACTGAGCAAAAGAA] [+] EMBL BM625313 [CCGCGAATGTACAGTGTAGCAAATTGGAACCCACTTTGACAGTAAAGATCGTGCGGGATTGATTGTGTGAGTGTGATTTACAGTTAATAGTCCAATTTAAACACTGGCAACCGGTGTGCCAGATACTCTCCGGAACTCGTTTATGCGCGCAAGGCAGCCCGCGCTTGTTCATTAGAGTATGTTGTATATTCTAGTAAAAAAAAAAACAAAGTCACAAACCACACGTGCATATACACCTTAGACAGAAGACAAACAGACTATTAAGATGCTACGCTAAACAAAAACACAAAACACATGCAAACGTACTCTAGTGGATAGGGAATGATCGATTTTTCAGTTCCTGATCTTTTGTGGTTTTACACAAAAAGAACGTGCAGGAGGATGAGAAAAAAGGAGTAGTAAAATGCTGTAAAATTAGTAGCGAAATTATTATTACCACTTACCGTAAATGCCGAGCTGCCCATCGGCTCGGACTGTTCGCGCTCGGAACGTTAACAAACAAACATACTTTGCGATTTGCATCCATGCACTGTAACCGCTCCAATGCTCGCAAATGGTGGTGTTTTCATACTCGCGAGTCTAGCAAATGAAGGACATAGGGAGGGATAGGGACAGTTTCCGTGCCAGGGAGGAGGCCATTTGGTTTACGATGTAAACTGGAATGACGGTTAGCCGGAAGCTCATACAGAC ] [+] EMBL BX626862 [ CGAGCTGCCCATCGGCTCGGACTGTTCGCGCTCGGAACGTTAACAAACAAACATACTTTGCGATTTGCATCCATGCACTGTAACCGCTCCAATGCTCGCAAATGGTGGTGTTTTCATACTCGCGAGTCTAGCAAATGAAGGACAGAGGGAGGGA GAGGACAGTTT CGTGCCAGGGAGGAGGCCATTT GTTTACGATGTAAACTGGAATGACGGTTAGCCGGAAGCTCATACACACGGACACATTCTCGCAGAAGCGCGTGTTGTGCCAGCGTGGCTCGATGATGGTGGCTATTTGCCATCAAGTCGGCACAAATGCATCATGTAATTTTATAAGCATCCGATGTTACTCTGCATATATACAATAGGTAGCTTATTTTGTTTCCGCTCAGCAAAGTGACGTTGGTGACGATCACACTAGCGAGCAGATTGTTTTAACTAATGTACTAACGATATAACCGCCTCTTTGTTACTTTGCGCTACGTATGCAAACCCTTTCCCCAAACCCTGTTGATAAGTTATATCCCCTGTGCGCTTTTGGGTGGAACTATTTGCTGTTTGGAAAGAAGTTTAACCATTTATACCACAAGTTTGCCAACTGCGCTTACCCCTGGGACAGCGTTTCAGTCACGGACGCTTTTTCACGGGCACGTGCAGCAGTCAAGGCAAGAATAATTGNACTCGTTTTTCTTTATTT ] [+] EMBL BM578670 [ ccGGGACAGTTT CGTGCCAGGGAGGAGGCCATTT GTTTACGATGTAAACTGGAATGACGGTTAGCCGGAAGCTCATACACACGGACACATTCTCGCAGAAGCGCGTGTTGTGCCAGCGTGGCTCGATGATGGTGGCTATTTGCCATCAAGTCGGCACAAATGCATCATGTAATTTTATAAGCATCCGATGTTACTCTGCATATATACAATAGGTAGCTTATTTTGTTTCCGCTCAGCAAAGTGACGTTGGTGACGATCACACTAGCGAGCAGATTGTTTTAACTAATGTACTAACGATATAACCGCCTCTTTGTTACTTTGCGCTACGTATGCAAACCCTTTCCCCAAACCCTGTTGATAAGTTATATCCCCTGTGCGCTTTTGGGTGGAACTATTTGCTGTTTGGAAAGAAGTTTAACCATTTATACCACAAGTTTGCCAACTGCGCTTACCCCTGGGACAGCGTTTCAGTCACGGACGC TTTTCACGGGCACGTGCAGCAGTCAAGGCAAGAATAATTGTACTCGTTTTTCTTTATTTCCTTTCTTAAACCCAATGGGTTGTTGGTGAATGGTATACATTTTGTAAAAATATTCTATTTATTTCGTAGGAAACGATTCTGCTACTGTTCAGCGTTTGCGAAACGTTCACACACTTTTATCCTCGACTGAGCAAAAGAA] consensusID : consensus_5214#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 1044 fasta sequence [GCAGATCCCCGACGGTTAAAACTGTTTGCTGTTTGGAACGAAGTTAACCATATTATACCACAAGTTTGCCAACTGCGCTTACCCCTTGGACAGCGTTTCAGTCACAGACGCTTTTCACGGGCGCGTGCAGCAGTCAAGGCAAGAATAATTGTACTACGTTTTTACTATATATAATCCTTTCTTCAAACCCAATGGGTTAGTACGGTGCAATGCGTTGTATACATNTTAGTAAANACATATTCTATATCATTTCGTCAGGGAAACGATTTCTGCTAACTGGTNCCAGCGGTTATGGCGAAAACGTTCAACACAACTAATAATTCCTTCGCACTTGGCAGCCACAAAAGAAAGGCTAACGAACACAGTTGAGGTTGNGCGCANNAGAAGTNCCAAGTTTACCCCGGGGAAACCACCGAATGCTCCACTATTGANTGTCAGNTGGTCATGGTCCCCGACAACATTAGGCCGAGAAGGANATTATTTGGCCAACAAATGTCAACAAGNACACAACCAAGCAGTGGGCTCCACGGGGATTGCGGGAAACCCCAAGGAACAGCAATATTGGTTTAAAGATTTATCTTCCGCACCANCTTCGGGAAAGTATAATCGGCTACTCTGNAACACAACNAGACAGGACAAAATACAAGGAAACNATTGAATTNGGTCGGTANACCCACAGCTAACTTGGATGTAATTTCAGCCAGGAACATCAAACACCCNTACAGAGTCTGGAAANATTCNANAACTATTATCAAGACGATGGAATTTTTACCCCGCANCATACGGCCATTNTCCTGCCCCCGCCCCANAANTGATTCAANCGGCCCCGNAAGTGCAAAAAGTGGGAGTGTGATGGTACCCGGAACGGAGNAAGTAAAGTCNAGATATGGGACATGGACAGTGTACTTTCCTGGATGGATTNTAGCAGACGTATTGCACCAACACTANTATCGGAATCTAACGACTGGAAGTGTAATTGGCCATGTATGGGGAAAACGAAGGNNAACACGGATCTACNCCCGACATACTTTGGCTGGNCCAGAG] [+] EMBL AL695640 [GCAGATCCCCGACGGTTAAAACTGTTTGCTGTTTGGAACGAAGTTAACCATATTATACCACAAGTTTGCCAACTGCGCTTACCCCTTGGACAGCGTTTCAGTCACAGACGCTTTTCACGGGCGCGTGCAGCAGTCAAGGCAAGAATAATTGTACTACGTTTTTACTATATATAATCCTTTCTTCAAACCCAATGGGTTAGTACGGTGCAATGCGTTGTATACATNTTAGTAAANACATATTCTATATCATTTCGTCAGGGAAACGATTTCTGCTAACTGGTNCCAGCGGTTATGGCGAAAACGTTCAACACAACTAATAATTCCTTCGCACTTGGCAGCCACAAAAGAAAGGCTAACGAACACAGTTGAGGTTGNGCGCANNAGAAGTNCCAAGTTTACCCCGGGGAAACCACCGAATGCTCCACTATTGANTGTCAGNTGGTCATGGTCCCCGACAACATTAGGCCGAGAAGGANATTATTTGGCCAACAAATGTCAACAAGNACACAACCAAGCAGTGGGCTCCACGGGGATTGCGGGAAACCCCAAGGAACAGCAATATTGGTTTAAAGATTTATCTTCCGCACCANCTTCGGGAAAGTATAATCGGCTACTCTGNAACACAACNAGACAGGACAAAATACAAGGAAACNATTGAATTNGGTCGGTANACCCACAGCTAACTTGGATGTAATTTCAGCCAGGAACATCAAACACCCNTACAGAGTCTGGAAANATTCNANAACTATTATCAAGACGATGGAATTTTTACCCCGCANCATACGGCCATTNTCCTGCCCCCGCCCCANAANTGATTCAANCGGCCCCGNAAGTGCAAAAAGTGGGAGTGTGATGGTACCCGGAACGGAGNAAGTAAAGTCNAGATATGGGACATGGACAGTGTACTTTCCTGGATGGATTNTAGCAGACGTATTGCACCAACACTANTATCGGAATCTAACGACTGGAAGTGTAATTGGCCATGTATGGGGAAAACGAAGGNNAACACGGATCTACNCCCGACATACTTTGGCTGGNCCAGAG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_5214#0 CCGCGAATGTACAGTGTAGCAAATTGGAACCCACTTTGACAGTAAAGATCGTGCGGGATT 60 consensus_5214#1 ------------------------------------------------------------ consensus_5214#0 GATTGTGTGAGTGTGATTTACAGTTAATAGTCCAATTTAAACACTGGCAACCGGTGTGCC 120 consensus_5214#1 -----------------------------------GCAGATCCCCGACGGTTAAA--ACT 23 * * * * * * consensus_5214#0 AGATACTCTCCGGAACTCGTTTATGCGCGCAAGGCAGCCCGCGCTTGTTCATTAGAGTAT 180 consensus_5214#1 GTTTGCTGTTTGGAACGAAGTTAACCATATTATAC--CACAAGTTTGCCAACTG-----C 76 * ** * ***** *** * * * * * * *** * * consensus_5214#0 GTTGTATATTCTAGTAAAAAAAAAAACAAAGTCACAAACCACACGTGCATATACACCTTA 240 consensus_5214#1 GCTTACCCCTTGGACAGCGTTTCAGTCACAGACGCTTTTCACGGGCGCGTGCAGCAGTCA 136 * * * * * ** ** * * *** * ** * * * * consensus_5214#0 GACAGAAGACAAACAGACTATTAAGATGCTACGC-TAAACAAAAACACAAAACACATGCA 299 consensus_5214#1 AGGCAAGAATAATTGTACTACGTTTTTACTATATATAATCCTTTCTTCAAACCCAATGGG 196 * * ** **** * *** *** * **** * *** consensus_5214#0 AACGTACTCTAGTGGATAGGGAATGATCGATTTTTCAGTTCCTGATCTTTTGTGGTTTTA 359 consensus_5214#1 TTAGTACGGTG--CAATGCGTTGTATACATNTTAGTAAANACATATTCTATATCATTTCG 254 **** * ** * * * ** * * ** * * * *** consensus_5214#0 -CACAAAAAGAACGTGCAGGAGGATGAGAAAAAAGGAGTAGTAAAATGCTGTAAAATTAG 418 consensus_5214#1 TCAGGGAAACGATTTCTGCTAACTGGTNCCAGCGGTTATGGCGAAAACGTTCAACACAAC 314 ** *** * * * * * * * * *** * ** * * consensus_5214#0 TAGCGAAATTATTATTACCACTTACCGTAAATGCCGAGCTGCCCATCG--GCTCGGACTG 476 consensus_5214#1 TAATAATTCCTTCGCACTTGGCAGCCACAAAAGAAAGGCTAACGAACACAGTTGAGGTTG 374 ** * * ** *** * *** * * * * * * ** consensus_5214#0 TTCGCGCTCGGAACGTTAACAAACAAACATACTTTGCGATTTGCATCCATGCACTGTAAC 536 consensus_5214#1 NGCGCANNAGAAGTNC-------CAAGTTTACCCCGGG----GAAACCACCGAATG---C 420 *** * * *** *** * * * * *** * ** * consensus_5214#0 CGCTCCAATGCTCG-CAAATGGTGGTGTTTTCATACTCGCGAGTCTAGCAAATGAAGGAC 595 consensus_5214#1 TCCACTATTGANTGTCAGNTGGTCATGGTCCC----CGACAACATTAGGCCGAGAAGGAN 476 * * * ** * ** **** ** * * * * *** ****** consensus_5214#0 ATAGGGAGGGAAGGGACAGTTTCGTGCCAGGGAGGAGGCCATTTGTTTACGATGTAAACT 655 consensus_5214#1 ATTATTTGGCCAACAA-------ATGTCAACAAGNACACAACCAAGCAGTGGGCTCCACG 529 ** ** * * ** ** ** * * * * * ** consensus_5214#0 GGAATGACGGTTAGCCGGAAGCTCATACACACGGACACATTCTCGCAGAAGCGCGTGTTG 715 consensus_5214#1 GGGATTGCGGGAAACCCCAAG-----GAACAGCAATATTGGTTTAAAGATTTATCTTCCG 584 ** ** *** * ** *** *** * * * *** * * consensus_5214#0 TGCCAGCGTGGCTCGATGATGGT-GGCTATTTGCCATCAAGTCGGCACAAATGCATCATG 774 consensus_5214#1 CACCANCTTCGGGAAAGTATAATCGGCTACTCTGNAACACAACNAGACAGG-ACAAAATA 643 *** * * * * ** * ***** * * ** * *** ** ** consensus_5214#0 TAATTTTATAAGCATCCGATGTTACTCTGCATATATACAATAGGTAGCTTATTTTGTTTC 834 consensus_5214#1 CAA----GGAAACNATTGAATTNGGTCGGTANACCCACAGC---TAACTTG---GATGTA 693 ** ** * ** * ** * * * *** ** *** * * consensus_5214#0 CGCTCAGCAAAGTGACGTTGGTGACGATCACACTAGCGAGCAGATTGTTTTAACTAATGT 894 consensus_5214#1 ATTTCAGCCAGG-AACATCAAACACCCNTACAGAGTCTGGAAANATTCNANAACTATTAT 752 ***** * * ** * ** *** * * * * ***** * * consensus_5214#0 ACTAACGATATAACCGCCTCTTTGTTACTTTGCGCTACGTATGCAAACCCTTTCCCCAAA 954 consensus_5214#1 CAAGACGATGGAA--------TTTTTACCCCGCANCATACGGCCATTNTCCTGCCCCCGC 804 ***** ** ** **** ** * ** * * **** consensus_5214#0 CCCTG--TTGATAAGTTATATCCCCTGTGCGCTTTTGGGTGGAACTATTTGCTGTTTGGA 1012 consensus_5214#1 CCCANAANTGATTCAANCGGCCCCGNAAGTGCAAAAAGTGGGAGTGTGATGGTACCCGGA 864 *** **** *** * ** * *** ** * *** consensus_5214#0 AAGAAGTTTAACCATTTATACCACAAGTTTGCCAACTGCGCTTACCCCTGGGACAGCGTT 1072 consensus_5214#1 ACGGAGNAAGTAAAGTCNAGATATGGGAC-ATGGACAGTGTACTTTCCTGGA--TGGATT 921 * * ** * * * * ** * * ***** * ** consensus_5214#0 TCAGTCACGGACGCTTTTTCACGGGCACGTGCAGCAGTCAAGGCAAGAATAATTGNACTC 1132 consensus_5214#1 NTAG---CAGACG-TATTGCACCAACAC---TANTATCGGAATCT--AACGACTGGAAGT 972 ** * **** * ** *** *** * * * * ** * ** * consensus_5214#0 GTTTTTCTTTATTTCCTTTCTTAAACCCAATGGGTTGTTGGTGAATGGTATACATTTTGT 1192 consensus_5214#1 GTAATTGGCCATGTA---TGGGGAAAACGAAGGNNAAC-----ACGGATCTACNCCC--- 1021 ** ** ** * * ** * * ** * * * *** consensus_5214#0 AAAAATATTCTATTTATTTCGTAGGAAACGATTCTGCTACTGTTCAGCGTTTGCGAAACG 1252 consensus_5214#1 -GACATACTTTGGCTGGNCCAGAG------------------------------------ 1044 * *** * * * * ** consensus_5214#0 TTCACACACTTTTATCCTCGACTGAGCAAAAGAA 1286 consensus_5214#1 ---------------------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||