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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5215#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1168 fasta sequence
[CCGCGGACGCGTGGGTTGACAGTGGAAAAAGTGTAGTGTAAAATAAAAAACAGAGGAACAGTGTCCCGGATTTTCCTTCCCCTTTCCCAATCTCTGTCAACACCTCGCTTGGTGGTGGCGAGGGTGGCAAATGAATGTTGTTAAATAATTTAAATAAAATTGGCAAAGTTTTATCGTCGCTGCGGCGGTGCAGCACTGAAGCGTGCTTCAAACCGTGACGTAACCTCAAAAATTAAACCCCGCCAGCAAACGGTGACAACGCCGAGAGAGCTCGCACAACTTCCATTCCAAAAAAAGGTTGGACAAAGCAGCTATGGCACACAAAACCACACTAAGGAGGTGTCACTGTTGGGCGTTGGTACGCACGCTGTTACTCTCGACCTTGCTGGCAGTGGTGCTGTGGCCCGCCGGTGAAGCGAATGCCCTGCCGTACGGTGCAGCCGACATCGAGCTGGACGAGGCAAACGATGCCGTCTCGCTGACCGCTTGCTACGTGGAGGACCTGCGCAACATCCGCGAACACTCGCAGAACCCGCTCGTCATTCAGATCAATCACTGCTACCTGCAGGAGCTGCCGAACGCGATCTTCATACGCTTCACCGATCTGAAGGTGCT-GGAAATTTGTGACAGCCGCGTTAACAACCTGCAAGACTTTGCCCTCAACGGGCTGCGCAACATCGAGTCGTTGAACCTTTCGCGCAACAATCTCACCACGATCAAGTCCTGGAGCGATCACGATCTCGACACGCTGCAGGTGCTCGATCTGCGCCGCAATCTTATCCGCTCGATCGACGAGCTTTCCTTCCAGCGCTATCCGGGGCTGGTGAAGCTCAGCTTGGCCGTGAACTTCATCACCACCATCCCCGGACGGGACGTTCAAGCCGGTGGCAAATCTGAAGAATCTCAACCTGGGCAAGAACCTGCTAACCACCATCGAGGAGGGTACGCTGCGCGGGCTGAACAAGCTAACGCACGTCGCGTTCCATCACAACCGCATCCGCACGATCCATCCGTTCGCGTTCGTCGGCAACGGCCATCTGAAGGTGTTGCAGCTGCAGGGCAACCAGCTCGGATCGTTCGAGCCGGACCTGTTCGGCAATCTGCCGCGGCTTACCTTCCTGAACGTGAGCAGCAACGAGCTGGAGACGGTGGTGAATTTGAGCTTCAA]
[+] EMBL BM635509 [CCGCGGACGCGTGGGTTGACAGTGGAAAAAGTGTAGTGTAAAATAAAAAACAGAGGAACAGTGTCCCGGATTTTCCTTCCCCTTTCCCAATCTCTGTCAACACCTCGCTTGGTGGTGGCGAGGGTGGCAAATGAATGTTGTTAAATAATTTAAATAAAATTGGCAAAGTTTTATCGTCGCTGCGGCGGTGCAGCACTGAAGCGTGCTTCAAACCGTGACGTAACCTCAAAAATTAAACCCCGCCAGCAAACGGTGACAACGCCGAGAGAGCTCGCACAACTTCCATTCCAAAAAAAGGTTGGACAAAGCAGCTATGGCACACAAAACCACACTAAGGAGGTGTCACTGTTGGGCGTTGGTACGCACGCTGTTACTCTCGACCTTGCTGGCAGTGGTGCTGTGGCCCGCCGGTGAAGCGAATGCCCTGCCGTACGGTGCAGCCGACATCGAGCTGGACGAGGCAAACGATGCCGTCTCGCTGACCGCTTGCTACGTGGAGGACCTGCGCAACATCCGCGAACACTCGCAGAACCCGCTCGTCATTCAGATCAATCACTGCTACCTGCAGGAGCTGCCGAACGCGATCTTCATACGCTTCACCGATCTGAAGGTGCTGGGAAATTTGTGACAGCCGCGTTAACAACCTGCAAGACTTTGCCCTCAACGGGCTGCGCAAC ]
[+] EMBL BM577975 [ cCGGCGGTGCAGCACTGAAGCGTGCTTCAAACGGTGACGTAACCTCAAAAATTAAACCCCGCCACCAAACGGTGACAACGCC AGAGAGCTCGCACAACTTCCATTCCACAAAAAGGTTGGACAAAGCAGCTATGGCACATAAAACCACACTGTGGGGGTGTCACTGTTGGGCGTTGGTCCGCACGCTGTTACTCTCGACCTTGCTGGCAGTGGTGCTGTGGCCCGCCGGTGAAGCGAATGCCCTGCCGTACGGTGCAGCCGACATCGAGCTGGACGAGGCAAACGATGCCGTCTCGCTGACCGCTTGCTATGTGGAGGACCTGCGCAACATCCGCGAACACTCGCAGAACCCGCTCGTCATTCAGATCAATCACTGCTACCTGCAGGAGCTGCCGAACGCGATCTTCATACGCTTCACCGATCTGCAGGTGTT GGAAATTTGTGACAGCCGCGTGAACAACCTGCAAGACTTTGCTCTCAACGGGCTGCGCAACATCGAGTCGTTGAACCTTTCGCGCAACAATCTCACCACGATCAAGTCCTGGAGCGATCACGATCTCGACACGCTGCAGGTGCTCGATCTGCGCCGCAATCTTATCCGCTCGATCGACGAGCTTTCCTTCCAGCGCTATCCGGGGCTGGTGAAGCTCAGCTTGGCCGTGAACTTCATCACCACCATCCCCGGACGGGA ]
[+] EMBL BM633679 [ ccgGTGGAGGACCTGCGCAACATCCGCGAACACTCGCAGAACCCGCTCGTCATTCAGATCAATCACTGCTACCTGCAGGAGCTGCCGAACGCGATCTTCATACGCTTCACCGATCTGAAGGTGCT GGAAATTTGTGACAGCCGCGTTAACAACCTGCAAGACTTTGCCCTCAACGGGCTGCGCAACATCGAGTCGTTGAACCTTTCGCGCAACAATCTCACCACGATCAAGTCCTGGAGCGATCACGATCTCGACACGCTGCAGGTGCTCGATCTGCGCCGCAATCTTATCCGCTCGATCGACGAGCTGTCCTTCCAGCGCTATCCGGGACTGGTGAAGCTCAGCTTGGCCGTGAACTTCATCACCACCGT CCCGGACGGGACGTTCAAGCCGGTGGCAAATCTGAAGAATCTCAACCTGGGCAAGAACCTGCTAACCACCATCGAGGAGGGTACGCTGCGCGGGCTGAACAAGCTAACGCACGTCGCGTTCCATCACAACCGCATCCGCACGATCCATCCGTTCGCGTTCGTCGGCAACGGCCATCTGAAGGTGTTGCAGCTGCAGGGCAACCAGCTCGGATCGTTCGAGCCGGACCTGTTCGGCAATCTGCCGCGGCTTACCTTCCTGAACGTGAGCAGCAACGAGCTGGAGACGGTGGTGAATTTGAGCTTCAA]
consensusID : consensus_5215#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 845 fasta sequence
[GATCCCCGAGGTTACACAGCTCGGATTGTTCGAGCCGGACTGTTCGTTCAATCTGCCGCGGCTTACCTTCCTGAACGTGAGCAGCAACGAGCTGGAGACGGTGGGGAATTTGAGCTTCAAGAACAGTGGCGATCTGCGCGTGCTCGATCTCAGGCTACAATCGCATCGGGCTGCTAGAAAGACCAACAGCTTTCAAAGGGGAACTTTTATTGAATTTTGGGAGGGCGGCTCCAAAGGTTCAGGCCACAAATCAAGGTTCGCAAACGGGTTTAGCCACAATTATTGTTGCTTGAACAGGGAATTTGGCGGCTTAAATTCTTGCCGCCNGAATCTTCCAATTCTTCCTTCCCGGGACAAACCAAGGCCTTGGGAACCTTAACGGTTGGGNGGGCCTTGAAAAGCCTTTGTTCCCAAGGCCGGCTTAACGGCCCAACGGGCCTGGGTTGCGGGAGTTACAAACACNTTCCTTCTTCCGGCAAACCGGCGAATCCGGGTGGAAGNGAATCCNGANNGCCGGCGGAACCGGCTGTTATATGGAACAGGAATCTTGGCCGAAANGGCTTAGGCAACCAAGCGGCCTCGGAACCCCTTNTGGGCATCCCCAAACACACACCCCAAGGGCATTGGGAACCAGGGACATTTAGAACCGGACCCTTATATCCCCTTAGGTTAGGGGTTACCGGGCCTTGGGATTGNNANAATTTCCTCTACCAACGACCNGTNTAGGTCTTTAGGCACACCAATNTGAACGCCGCCGAAGNGAAACAACGGGGGGGTATTCCCGGCAAANGAATTCCAAAATNTGGCGACTACCGGACCTAGCGTTTNGCGCAGAAAGGTNACTT]
[+] EMBL AL695643 [GATCCCCGAGGTTACACAGCTCGGATTGTTCGAGCCGGACTGTTCGTTCAATCTGCCGCGGCTTACCTTCCTGAACGTGAGCAGCAACGAGCTGGAGACGGTGGGGAATTTGAGCTTCAAGAACAGTGGCGATCTGCGCGTGCTCGATCTCAGGCTACAATCGCATCGGGCTGCTAGAAAGACCAACAGCTTTCAAAGGGGAACTTTTATTGAATTTTGGGAGGGCGGCTCCAAAGGTTCAGGCCACAAATCAAGGTTCGCAAACGGGTTTAGCCACAATTATTGTTGCTTGAACAGGGAATTTGGCGGCTTAAATTCTTGCCGCCNGAATCTTCCAATTCTTCCTTCCCGGGACAAACCAAGGCCTTGGGAACCTTAACGGTTGGGNGGGCCTTGAAAAGCCTTTGTTCCCAAGGCCGGCTTAACGGCCCAACGGGCCTGGGTTGCGGGAGTTACAAACACNTTCCTTCTTCCGGCAAACCGGCGAATCCGGGTGGAAGNGAATCCNGANNGCCGGCGGAACCGGCTGTTATATGGAACAGGAATCTTGGCCGAAANGGCTTAGGCAACCAAGCGGCCTCGGAACCCCTTNTGGGCATCCCCAAACACACACCCCAAGGGCATTGGGAACCAGGGACATTTAGAACCGGACCCTTATATCCCCTTAGGTTAGGGGTTACCGGGCCTTGGGATTGNNANAATTTCCTCTACCAACGACCNGTNTAGGTCTTTAGGCACACCAATNTGAACGCCGCCGAAGNGAAACAACGGGGGGGTATTCCCGGCAAANGAATTCCAAAATNTGGCGACTACCGGACCTAGCGTTTNGCGCAGAAAGGTNACTT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_5215#0 CCGCGGACGCGTGGGTTGACAGTGGAAAAAGTGTAGTGTAAAATAAAAAACAGAGGAACA 60
consensus_5215#1 ------------------------------------------------------------
consensus_5215#0 GTGTCCCGGATTTTCCTTCCCCTTTCCCAATCTCTGTCAACACCTCGCTTGGTGGTGGCG 120
consensus_5215#1 ------------------------------------------------------------
consensus_5215#0 AGGGTGGCAAATGAATGTTGTTAAATAATTTAAATAAAATTGGCAAAGTTTTATCGTCGC 180
consensus_5215#1 ------------------------------------------------------------
consensus_5215#0 TGCGGCGGTGCAGCACTGAAGCGTGCTTCAAACCGTGACGTAACCTCAAAAATTAAACCC 240
consensus_5215#1 -----------------------------------------GATCCCCGAGGTTACAC-- 17
* * * * *** **
consensus_5215#0 CGCCAGCAAACGGTGACAACGCCGAGAGAGCTCGCACAACTTCCATTCCAAAAAAAGGTT 300
consensus_5215#1 ----AGCTCGGATTGTTCGAGCCG-GACTGTTCGTTCAATCTGCCGCGGCTTACCTTCCT 72
*** ** **** ** * *** *** * * * *
consensus_5215#0 GGACA-AAGCAGCTATGGCACACAAAACCACACTAAGGAGGTGTCACTGTTG-GGCGTTG 358
consensus_5215#1 GAACGTGAGCAGCAACGA-GCTGGAGACGGTGGGGAATTTGAGCTTCAAGAACAGTGGCG 131
* ** ****** * * * * ** * * * * * * *
consensus_5215#0 GTACGCACGCTGTTACTCTCGACCTTGCTGGCAGTGGTGCTGTGGCCCGCCGGTGAAGCG 418
consensus_5215#1 ATCTGCGCGTGCTCGATCTCAGGCT-----ACAAT--CGCATCGGGCTGCTAGAAAGACC 184
* ** ** * **** ** ** * ** ** * ** * * *
consensus_5215#0 AATGCCCTGCCGTACGGTGCA---GCCGACATCGAGCTGGACGAGGCAAACGATGCCGTC 475
consensus_5215#1 AACAGCTTTCAAAGGGGAACTTTTATTGAATTTTGGGAGGGCGGCTCCAAAGGTTCAGGC 244
** * * * ** * ** * * ** ** * ** * * * * *
consensus_5215#0 TCGCTGACCGCTTGCTACGTGGAGGACCTGCGCAACATCCGCGAACACTCGCAGAACCCG 535
consensus_5215#1 -CACAAATCA--AGGTTCGCAAACGGGTTTAGCCACAATTATTGTTGCTTGAACAGGGAA 301
* * * * * * ** * * * ** *** ** * * *
consensus_5215#0 CTCGTCATTCAGATCAATCACTGCTACCTGCAGGAGCTGCCGAACGCGATCTTCATACGC 595
consensus_5215#1 TTTGGCG----GCTTAA--ATTCTTGCCGCCNGAATCTTCCAAT-----TCTTCCTTCCC 350
* * * * * ** * * * ** * * * ** ** * ***** * * *
consensus_5215#0 TTCACCGATCTGAAGGTGCTGGAAATTTGTGACAGCCGCGTTAACAACCTGCAAGACTTT 655
consensus_5215#1 GGGACAAACC--AAGGCCTTGGGAACCT-TAACGGTTGGGNGGGC--CTTGAAAAGCCTT 405
** * * **** *** ** * * ** * * * * * ** ** * **
consensus_5215#0 GCCCTCAACGGGCTGCGCAACATCGAGTCGTTGAACCTTTCGCGCAACAATCTCACCACG 715
consensus_5215#1 TGTTCCCAAGGCCGGCTTAACGGC---CCAACGGGCCTGGGTTGCGGGAGTTACAAACAC 462
* * ** * ** *** * * * *** ** * * **
consensus_5215#0 ATCAAGTCCTGGAGCGATC--ACGATCTCGACACGCTGCAGGTGCTCGATCTGCGCCGCA 773
consensus_5215#1 NTTCCTTCTTCCGGCAAACCGGCGAATCCGGGTGGAAGNGAAT-CCNGANNGCCGGCGGA 521
* ** * ** * * *** ** * * * * ** ** ** *
consensus_5215#0 ATCTTATCCGCTCGATCGACGAGCTTTCCTTCCAGCGCTATCCGGGGCTGGTGAAGCTCA 833
consensus_5215#1 ACC--GGCTGTTATATGGAACAGGAATCTTGGCCGAA------ANGGCTTAGGCAACCAA 573
* * * * * ** ** ** ** * * * **** * * * *
consensus_5215#0 GCTTGGCCGTGAACTTCATCACCACCATCCCCGGACGGGACGTTCAAGCCGGTGGCAAAT 893
consensus_5215#1 GC--GGCCTCGGAACCCCTTNTGGGCATCCCCAAACACACACCCCAAGGGCATTGGGAAC 631
** **** * * * * ******* ** **** * * **
consensus_5215#0 CTGAAGAATCTCAACCTGGGCAAGAACCTGCTAACCACCATCGAGGAGGGTACGCTGCGC 953
consensus_5215#1 CAGGGACATTTAGAACCGGAC-----CCTTATATCC-CCTTAGGTTAGGG---------- 675
* * ** * * * ** * *** ** ** ** * * ****
consensus_5215#0 GGGCTGAACAAGCTAACGCACGTCGCGTTCCATCACAACCGCATCCGCACGATCCATCCG 1013
consensus_5215#1 -----------GTTACCGGGCCTTGGGATT-GNNANAATTTCCTCT--ACCAACGACCNG 721
* ** ** * * * * * * ** * ** ** * * * * *
consensus_5215#0 TTCGCGTTCGTCGGCAACGGCCATCTGAAGGTGTTGCAGCTGCAGGGCAACCAGCTCGGA 1073
consensus_5215#1 TNTAGGTCTTTAGGCA-CACCAATNTGAA-----CGCCGCCGAAGNGAAACAACGGGGGG 775
* ** * **** * * ** **** ** ** * ** * *** * **
consensus_5215#0 TCGTTCGAGCCGGACCTGTTCGGCAATCTGCCGCGGCTTACCTTCCTGAACGTGAGCAGC 1133
consensus_5215#1 GTATTCCCGGCAAANGAATTCCAAAATNTG--GCGACT-ACCGGACCTAGCGTTTNGCGC 832
*** * * * *** *** ** *** ** *** * * *** **
consensus_5215#0 AACGAGCTGGAGACGGTGGTGAATTTGAGCTTCAA 1168
consensus_5215#1 AGAAAGGTNACTT---------------------- 845
* ** *
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||