cluster # 5222

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Anopheles gambiae
cluster # 5222 cluster # 5222 Sequences # 4 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_5222#0 length = 601 sequences # 3

consensus_5222#1 length = 546 sequences # 1

consensusID : consensus_5222#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 601
fasta sequence

                              [GAATCGCCCGAGGTTTACAGCAATAGACGCTAGTTGTGATCATGGCAAACCAGAAGTTTGGCGAACAATCGGGTAAGGCGTCACAGGTTGAGCGGAATGAAGACAGCCCCGACATTTCGGCAAAGGATATAATCCAAGGTATCAAGGGACTGAACTTAAACAGCTATGCCACGCGCAAATCGATTGCACA-GGGCATGCTCGATCTTGCATTGCTAACT-GCCAATGCATCACAGCTGAAGTGAGAAGGTCCACCCACACAAG-TTTTGAGGAACCAAATATTTCACGTATATTATTTGT-TTCCTCTGTGG-CA-GAT-ATTCCAAGCCCTTCTCATCATC-GTTCTGGCAG-TTGTTTTTGATATC-AACAAAGTGGAA-GAGCAGAAACGTACTGAT-ATCGTAAA-TAA-TATTCTTATTGCGTT-TACAGTAATCAG-TGTTGTA-GTGAATGTTA-TTATCAGTGCCTTTGACA-TGA-AGTCACAAACAGACATTCTGANAACAAA-GCTGATCATGCTTG-AA-A-TA-GCA-TCATTAACTCAACTGATTG-TAATCATAAA-TAAAACAACGAACAAAAGTGCTATTTACCTCTTGTAAAAAACAAAACACAAACAAAA]

[+] EMBL AL932060             [GAATCGCCCGAGGTTTACAGCAATAGACGCTAGTTGTGATCATGGCAAACCAGAAG TTGGCGAACAATCGGGTAAGGCGTCACAGGTTGAGCGGAATGAAGACAGCCCCGACATTTCGGCAAAGGATATAATCCAAGGTATCAAGGGACTGAACTTAAACAGCTATGCCACGCGCAAATCGATTGCACA GGGCATGCTCGATCTTGCATTGCTAACT GCCAATGCATCACAGCTGAAGTGAGAAGGTCCACCCACACAAG  TTTGAGGAACCAAATATTTCACGTATATTATTTGT TTCCTCTGTGG CA GAT ATTCCAAGCCCTTCTCATCATC GTTCTGGCAG TTGTTTTTGATATC AACAAAGTGGAA GAGCAGAAACGTACTGAT ATCGTAAA TAA TATTCTTATTGCGTT TACAGTAATCAG TGTTGTA GTGAATGTTA TTATCAGTGCCTTTGACA TGA AGTCACAAACAGACATTCTGANAACAAA GCTGATCATGCTTG AA A TA GCA TCATTAACTCAACTGATTG TAATCATAAA TAAAACAACGAACAAAAGTGCTATTTACCTCTTGTAAAAAACAAAACACAAACAAAA]
[+] EMBL AL930204             [GAATCGCCCGAGGTTTACAGCAATAGACGCTAGTTGTGATCATGGCAAACCAGAAGTTTGGCGAACAATCGGGTAAGGCGTCACAGGTTGAGCGGAATGAAGACAGCCCCGACATTTCGGCAAAGGATATAATCCAAGGTATCAAGGGACTGAACTTAAACAGCTATGCCACGCGCAAATCGATTGCACA GGGCATGCTCGATCTTGCATTGCTAACT GCCAATGCATCACAGCTGAAGTGAGAAGGTCCACCCACACAAG TTTTGAGGAACCAAATATTTCACGTATATTATTTGT TTCCTCTGTGG CA GAT ATTCCAAGCCCTTCTCATCATC GTTCTGGCAG TTGTTTTTGATATC AACAAAGTGGAA GAGCAGAAACGTACTGAT ATCGTAAACTAACTATTCTTATTGCGTTNTACAGTAATCAGCNGTTGTANGTGAATGTTACTTATCAGTGCCTTTGACACTGACAGTCACAAACAGACATTCTGA AACAAACGCTGATCATGCTTGCAACACTANGCACTCATTAACTCAACTGATTGNTAATCATAAACTAAAACAACGAACAAAAGTGC                                    ]
[+] EMBL AL695668             [  agatCCCGAGG TTAAAGCAATAGACGCTAGTTGTGATCATGGC AACCATAAGTTTGGCGAACAATCGGGTAAGGCGTCACAGGTTGAGCGGAATGAAGACAGCCCCGACATTTCGGCAAAGGATATAATCCAAGGTATCAAGGGACTGAACTTAAACAGCTATGCCACGCGCAAATCGATTGCACAGGGGCATGCTCGATCTTGCATTGCTAACTGGCCAATGCATCACAGCTGAAGTGAGAAGGTCCA CCACACAAGTTTTTGAGGAACCAAATATTTCACGTATATTATTTGTATTCCTCTGTGGACAGGATAATTCCAAGCCCTTCTCATCATCGGTTCTGGCAGACNGTTTGTGATATCAAACAAAGTGGAACGAGCAGAAACGTACTGATAATCGTA                                                                                                                                                                                                                              ]




>consensus_5222#0
GAATCGCCCGAGGTTTACAGCAATAGACGCTAGTTGTGATCATGGCAAACCAGAAGTTTG
GCGAACAATCGGGTAAGGCGTCACAGGTTGAGCGGAATGAAGACAGCCCCGACATTTCGG
CAAAGGATATAATCCAAGGTATCAAGGGACTGAACTTAAACAGCTATGCCACGCGCAAAT
CGATTGCACAGGGCATGCTCGATCTTGCATTGCTAACTGCCAATGCATCACAGCTGAAGT
GAGAAGGTCCACCCACACAAGTTTTGAGGAACCAAATATTTCACGTATATTATTTGTTTC
CTCTGTGGCAGATATTCCAAGCCCTTCTCATCATCGTTCTGGCAGTTGTTTTTGATATCA
ACAAAGTGGAAGAGCAGAAACGTACTGATATCGTAAATAATATTCTTATTGCGTTTACAG
TAATCAGTGTTGTAGTGAATGTTATTATCAGTGCCTTTGACATGAAGTCACAAACAGACA
TTCTGANAACAAAGCTGATCATGCTTGAAATAGCATCATTAACTCAACTGATTGTAATCA
TAAATAAAACAACGAACAAAAGTGCTATTTACCTCTTGTAAAAAACAAAACACAAACAAA
A

consensusID : consensus_5222#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 546
fasta sequence

                              [GTTGTGATCATGGCAAACCAGAAGTTTGGCGAACAATCGGGTAAGGCGTCACAGGTTGAGCGGAATGAAGACAGCCCCGACATTTCGGCAAAGGATATAATCCAAGGTATCAAGGGACTGAACTTAAACAGCTATGCCACGCGCAAATCGATTGCACAGGGCATGCTCGATCTTGCATTGCTAACTGCCAATGCATCACAGCTGAAGTACATTCTCACTGTTGGCGAGACGCATCAATTCTATCATTTGCTGTTAGTGTTAATCATTGTGTCTATTTCGCTACAGATATTCCAAGCCCTTCTCATCATCGTTCTGGCAGTTGTTTTTGATATCAACAAAGTGGAAGAGCAGAAACGTACTGATATCGTAAATAATATTCTTATTGCGTTTACAGTAATCAGTGTTGTAGTGAATGTTATTATCAGTGCCTTTGACATGAAGTCACAAACAGACATTCTGAAACAAAGCTGATCATGCTTGAAATAGCATCATTAACTCAACTGATTGTAATCATAAATAAAACAACGAACAAAAGTGCTATTTACC]

[+] EMBL BX626256             [GTTGTGATCATGGCAAACCAGAAGTTTGGCGAACAATCGGGTAAGGCGTCACAGGTTGAGCGGAATGAAGACAGCCCCGACATTTCGGCAAAGGATATAATCCAAGGTATCAAGGGACTGAACTTAAACAGCTATGCCACGCGCAAATCGATTGCACAGGGCATGCTCGATCTTGCATTGCTAACTGCCAATGCATCACAGCTGAAGTACATTCTCACTGTTGGCGAGACGCATCAATTCTATCATTTGCTGTTAGTGTTAATCATTGTGTCTATTTCGCTACAGATATTCCAAGCCCTTCTCATCATCGTTCTGGCAGTTGTTTTTGATATCAACAAAGTGGAAGAGCAGAAACGTACTGATATCGTAAATAATATTCTTATTGCGTTTACAGTAATCAGTGTTGTAGTGAATGTTATTATCAGTGCCTTTGACATGAAGTCACAAACAGACATTCTGAAACAAAGCTGATCATGCTTGAAATAGCATCATTAACTCAACTGATTGTAATCATAAATAAAACAACGAACAAAAGTGCTATTTACC]




>consensus_5222#1
GTTGTGATCATGGCAAACCAGAAGTTTGGCGAACAATCGGGTAAGGCGTCACAGGTTGAG
CGGAATGAAGACAGCCCCGACATTTCGGCAAAGGATATAATCCAAGGTATCAAGGGACTG
AACTTAAACAGCTATGCCACGCGCAAATCGATTGCACAGGGCATGCTCGATCTTGCATTG
CTAACTGCCAATGCATCACAGCTGAAGTACATTCTCACTGTTGGCGAGACGCATCAATTC
TATCATTTGCTGTTAGTGTTAATCATTGTGTCTATTTCGCTACAGATATTCCAAGCCCTT
CTCATCATCGTTCTGGCAGTTGTTTTTGATATCAACAAAGTGGAAGAGCAGAAACGTACT
GATATCGTAAATAATATTCTTATTGCGTTTACAGTAATCAGTGTTGTAGTGAATGTTATT
ATCAGTGCCTTTGACATGAAGTCACAAACAGACATTCTGAAACAAAGCTGATCATGCTTG
AAATAGCATCATTAACTCAACTGATTGTAATCATAAATAAAACAACGAACAAAAGTGCTA
TTTACC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_5222#0      GAATCGCCCGAGGTTTACAGCAATAGACGCTAGTTGTGATCATGGCAAACCAGAAGTTTG 60
consensus_5222#1      --------------------------------GTTGTGATCATGGCAAACCAGAAGTTTG 28
                                                      ****************************

consensus_5222#0      GCGAACAATCGGGTAAGGCGTCACAGGTTGAGCGGAATGAAGACAGCCCCGACATTTCGG 120
consensus_5222#1      GCGAACAATCGGGTAAGGCGTCACAGGTTGAGCGGAATGAAGACAGCCCCGACATTTCGG 88
                      ************************************************************

consensus_5222#0      CAAAGGATATAATCCAAGGTATCAAGGGACTGAACTTAAACAGCTATGCCACGCGCAAAT 180
consensus_5222#1      CAAAGGATATAATCCAAGGTATCAAGGGACTGAACTTAAACAGCTATGCCACGCGCAAAT 148
                      ************************************************************

consensus_5222#0      CGATTGCACAGGGCATGCTCGATCTTGCATTGCTAACTGCCAATGCATCACAGCTGAAGT 240
consensus_5222#1      CGATTGCACAGGGCATGCTCGATCTTGCATTGCTAACTGCCAATGCATCACAGCTGAAGT 208
                      ************************************************************

consensus_5222#0      GAGAAGGTCCACCCACACAAGTTTTGAGGAACCAAATATTTCACGT--ATATTATT---- 294
consensus_5222#1      -ACATTCTCACTGTTGGCGAGACGCATCAATTCTATCATTTGCTGTTAGTGTTAATCATT 267
                       * *   **        * **        *  * *  ****   **   * *** *    

consensus_5222#0      -TGTTTCCTCTGTGGCAGATATTCCAAGCCCTTCTCATCATCGTTCTGGCAGTTGTTTTT 353
consensus_5222#1      GTGTCTATTTCGCTACAGATATTCCAAGCCCTTCTCATCATCGTTCTGGCAGTTGTTTTT 327
                       *** *  *  *   *********************************************

consensus_5222#0      GATATCAACAAAGTGGAAGAGCAGAAACGTACTGATATCGTAAATAATATTCTTATTGCG 413
consensus_5222#1      GATATCAACAAAGTGGAAGAGCAGAAACGTACTGATATCGTAAATAATATTCTTATTGCG 387
                      ************************************************************

consensus_5222#0      TTTACAGTAATCAGTGTTGTAGTGAATGTTATTATCAGTGCCTTTGACATGAAGTCACAA 473
consensus_5222#1      TTTACAGTAATCAGTGTTGTAGTGAATGTTATTATCAGTGCCTTTGACATGAAGTCACAA 447
                      ************************************************************

consensus_5222#0      ACAGACATTCTGANAACAAAGCTGATCATGCTTGAAATAGCATCATTAACTCAACTGATT 533
consensus_5222#1      ACAGACATTCTGAAA-CAAAGCTGATCATGCTTGAAATAGCATCATTAACTCAACTGATT 506
                      ************* * ********************************************

consensus_5222#0      GTAATCATAAATAAAACAACGAACAAAAGTGCTATTTACCTCTTGTAAAAAACAAAACAC 593
consensus_5222#1      GTAATCATAAATAAAACAACGAACAAAAGTGCTATTTACC-------------------- 546
                      ****************************************                    

consensus_5222#0      AAACAAAA 601
consensus_5222#1      --------