These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5224#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 820 fasta sequence [GCCCCCGCAGGTCACGTGTGCGGCACACGCAGACCAACGAATTGTAGC-AAACGTGTGATAAATAGGAATAGATTGTGAAAACGGCATAAAAATGAGTAGTGGACAGTTTGACGATGCGCTCGATGATACCACAGAACGCTTTGACGGTGTTCAACTGCAGGAGAAAGCTACGTCTCCTCCCGCCAGCAAAGTGAACGGNACAGCGAAGCTGACCAAAATCGAGATTCAAGATGCACTGTTTGGAGCACCGAATAGGGACGAACCGACGGCGA-CGACGCGCAGTGGGAAGAGTATTACGACGACGAGGAAAGCGACGACGATGATGATTTCTACTGCTACGAGGGTGGAGCAGCTGAAGCGTAACCAGCAGCTAAACCTGAACCAGTCCCACACGAACGCACAAACTACAAGCCAGAAGGTGTCGCACTATCAG-CCG-CGATGTACTGTTCAAACAAGTTCACCAACCGAATCAACGTGGAAAAGTATGAAGGACCGGCCTCGCTTCCGAACCACGCAAAGAACACGCTGATCGAAACGCAACGCAAAGCAGACAGCGACCGATTGCGCAGCAAGGACAAGCAGGATCGTGCGACGGCCGAGCAGGTGATGGATCCGCGTACGCGCATGATACTGTTCAAGCTGCTGAACCGCGCGATGATCACGGAGATCAACGGGTGCATATCGACCGGGAAGGAAGCGAACGTGTACCACGCCACCGCCGCCAGCGGACGGGACTACGCGATCAAGATCTTTAAAACGTCCATCCTCACGTTCAAGGATCGGGACAAGTACGTGACGGGAGAGTACCGGTTCCGGCACG] [+] EMBL AL695677 [GCCCCCGCAGGTCACGTGTGCGGCACACGCAGACCAACGAATTGTAGC AAACGTGTGATAAATAGGAATAGATTGTGAAAACGGCATAAAAATGAGTAGTGGACAGTTTGACGATGCGCTCGATGATACCACAGAACGCTTTGACGGTGTTCAACTGCAGGAGAAAGCTACGTCTCCTCCCGCCAGCAAAGTGAACGGNACAGCGAAGCTGACCAAAATCGAGATTCAAGATGCACTGTTTGGAGCACCGAATAGGGACGAACCGACGGCGA CGACGCGCAGTGGGAAGAGTATTACGACGACGAGGAAAGCGACGACGATGATGATTTCTACTGCTACGAGGGTGGAGCAGCTGAAGCGTAACCAGCAGCTAAACCTGAACCAGTCCCACACGAACGCACAAACTACAAGCCAGAAGGTGTCGCACTATCAG CCG CGATGTACTGTTCAAACAAGTTCA ] [+] EMBL BX624962 [ GCGGCACACGCAGACGAA GAATTGTAGCAAAACGTGTGATAAATAGGAATAGATTGTGAAAACGGCATAAAAATGAGTAGTGGACAGTTTGACGATGCGCTCGATGATACCACAGAACGCTTTGACGGTGTTCAACTGCAGGAGAAAGCTACGTCTCCTCCCGCCAGCAAAGTGAACGGCACAGCGAAGCTGACCAAAATCGAGATTCAAGATGCACTGTTTGGAGCACCGAATAGGGACGAACCGACGGCGACCGACGCGCAGTGGGAAGAGTATTACGACGACGAGGAAAGCGACGACGATGATGATTTCTACTGCTACGAGGGTGGAG AGCTGAAGCGTAACCAGCAGCTAAACCTGAACCAGTCCCACACGAACGCACAAACTACAAGCCAGAAGGTGTCGCACTATCAGCCCGCCGATGTACTGTTCAAA AAGTTCACCAACCGAATCAACGTGGAAAAGTATGAAGGACCGGCCTCGCTTCCGAACCACGCAAAGAACACGCTGATCGAAACGCAACGCAAAGCAGACAGCGACCGATTGCGCAGCAAGGACAAGCAGGATCGTGCGACGGCCGAGCAGGTGATGGATCCGCGTACGCGCATGATACTGTTCAAGCTGCTGAACCGCGCGATGATCACGGAGATCAACGGGTGCATATCGACCGGGAAGGAAGCGAACGTGTACCACGCCACCGCCGCCAGCGGACGGGACTACGCGATCAAGATCTTTAAAACGTCCATCCTCACGTTCAAGGATCGGGACAAGTACGTGACGGGAGAGTACCGGTTCCGGCACG] consensusID : consensus_5224#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 557 fasta sequence [CCGCCCACGCGTCCGGCTACGTCTCCTCCCGCCAGCAAAGTGAACGGCACAGCGAAGCTGACCAAAATCGAGATTCAAGATGCACTGTTTGGAGCACCGAATAGGGACGAACCGACGGCGACCGACGCGCAGTGGGAAGAGTATTACGACGACGAGGAAAGCGACGACGATGATGATTTCTACTGCTACGAGGGTGGAGAGCTGAAGCGTAACCAGCAGCTAAACCTGAACCAGTCCCACACGAACGCGCAAACTACAAGCCAGAAGGTGTCGCACTATCAGCCCGCCGATGTACTGTTCAAAAAGTTCACCAACCGAATCAACGTGGAAAAGTATGAAGGACCGGCCTCGCTTCCGAACCACGCAAAGAACACGCTGATCGAAACGCAACGCATTAGCAGACAGCGACCGATTGCGCAGCAAGGACAAGCAGGATCGTGCGACGGCCGAGCAGGTGATGGATCCGCGTACGCGCATGATACTGTTCAAGCTGCTGAACCGCGCGATGATCACGGAGATCAACGGGTGCATATCGACCGGGTAAGGAAGCGAACGTG] [+] EMBL BM584699 [CCGCCCACGCGTCCGGCTACGTCTCCTCCCGCCAGCAAAGTGAACGGCACAGCGAAGCTGACCAAAATCGAGATTCAAGATGCACTGTTTGGAGCACCGAATAGGGACGAACCGACGGCGACCGACGCGCAGTGGGAAGAGTATTACGACGACGAGGAAAGCGACGACGATGATGATTTCTACTGCTACGAGGGTGGAGAGCTGAAGCGTAACCAGCAGCTAAACCTGAACCAGTCCCACACGAACGCGCAAACTACAAGCCAGAAGGTGTCGCACTATCAGCCCGCCGATGTACTGTTCAAAAAGTTCACCAACCGAATCAACGTGGAAAAGTATGAAGGACCGGCCTCGCTTCCGAACCACGCAAAGAACACGCTGATCGAAACGCAACGCATTAGCAGACAGCGACCGATTGCGCAGCAAGGACAAGCAGGATCGTGCGACGGCCGAGCAGGTGATGGATCCGCGTACGCGCATGATACTGTTCAAGCTGCTGAACCGCGCGATGATCACGGAGATCAACGGGTGCATATCGACCGGGTAAGGAAGCGAACGTG] consensusID : consensus_5224#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 241 fasta sequence [AGAATNGCCNAGGCTAGATACGGGTGCATATCGACCGGGAAGGAAGCGAACGTGTACCACGCCACCGCCGCCAGCGGACGGGACTACGCGATCAAGATCTTTAAAACGTCCATCCTCACGTTCAAGGATCGGGACAAGTACGTGACGGGAGAGTACCGGTTCCGGCACGGCTACAGCAAGCACAATCCGCGCAAAATGGTACGCACCTGGGCGGAGAAGGAGATGCGCAATCTGGTGCGCA] [+] EMBL AL697443 [AGAATNGCCNAGGCTAGATACGGGTGCATATCGACCGGGAAGGAAGCGAACGTGTACCACGCCACCGCCGCCAGCGGACGGGACTACGCGATCAAGATCTTTAAAACGTCCATCCTCACGTTCAAGGATCGGGACAAGTACGTGACGGGAGAGTACCGGTTCCGGCACGGCTACAGCAAGCACAATCCGCGCAAAATGGTACGCACCTGGGCGGAGAAGGAGATGCGCAATCTGGTGCGCA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_5224#0 GCCCCCGCAGGTCACGTGTGCGGCACACGCAGACCAACGAATTGTAGCAAACGTGTGATA 60 consensus_5224#1 ------------------------------------------------------------ consensus_5224#2 ------------------------------------------------------------ consensus_5224#0 AATAGGAATAGATTGTGAAAACGGCATAAAAATGAGTAGTGGACAGTTTGACGATGCGCT 120 consensus_5224#1 ------------------------------------------------------------ consensus_5224#2 ------------------------------------------------------------ consensus_5224#0 CGATGATACCACAGAACGCTTTGACGGTGTTCAACTGCAGGAGAAAGCTACGTCTCCTCC 180 consensus_5224#1 ------------------------------CCGCCCAC-GCGTCCGGCTACGTCTCCTCC 29 consensus_5224#2 ------------------------------------------------------------ consensus_5224#0 CGCCAGCAAAGTGAACGGNACAGCGAAGCTGACCAAAATCGAGATTCAAGATGCACTGTT 240 consensus_5224#1 CGCCAGCAAAGTGAACGGCACAGCGAAGCTGACCAAAATCGAGATTCAAGATGCACTGTT 89 consensus_5224#2 ------------------------------------------------------------ consensus_5224#0 TGGAGCACCGAATAGGGACGAACCGACGGCGAC-GACGCGCAGTGGGAAGAGTATTACGA 299 consensus_5224#1 TGGAGCACCGAATAGGGACGAACCGACGGCGACCGACGCGCAGTGGGAAGAGTATTACGA 149 consensus_5224#2 ------------------------------------------------------------ consensus_5224#0 CGACGAGGAAAGCGACGACGATGATGATTTCTACTGCTACGAGGGTGGAGCAGCTGAAGC 359 consensus_5224#1 CGACGAGGAAAGCGACGACGATGATGATTTCTACTGCTACGAGGGTGGAG-AGCTGAAGC 208 consensus_5224#2 ------------------------------------------------------------ consensus_5224#0 GTAACCAGCAGCTAAACCTGAACCAGTCCCACACGAACGCACAAACTACAAGCCAGAAGG 419 consensus_5224#1 GTAACCAGCAGCTAAACCTGAACCAGTCCCACACGAACGCGCAAACTACAAGCCAGAAGG 268 consensus_5224#2 --------------------------------AGAATNGCCNAGGCTAGATACGGGTGCA 28 * * ** * *** * * * consensus_5224#0 TGTCGCACTATCAGCCG--CGA--TGTACTGTTCAAACAAGTTCACCAACCGAATCAACG 475 consensus_5224#1 TGTCGCACTATCAGCCCGCCGA--TGTACTGTTCAAA-AAGTTCACCAACCGAATCAACG 325 consensus_5224#2 TATCGACCGGGAAGGAAGCGAACGTGTACCACGCCACCGCCGCCAGCGGACGGGACTACG 88 * *** * ** * ***** * * ** * ** * *** consensus_5224#0 TGGAAAAG----TATGAAGGACCGGCCTCGCTTCCGAACCACGCAAAGAACACGCTGATC 531 consensus_5224#1 TGGAAAAG----TATGAAGGACCGGCCTCGCTTCCGAACCACGCAAAGAACACGCTGATC 381 consensus_5224#2 CGATCAAGATCTTTAAAACGTCCATCCTCACGTTCAAGGATCGGGACAAGTACG-TGACG 147 * *** * ** * ** **** * * * * ** * * *** *** consensus_5224#0 GAAACGCAACGCAA-AGCAGACAGCGACCGATTGCGCAGCAAGGACAAGCAGGATCGTGC 590 consensus_5224#1 GAAACGCAACGCATTAGCAGACAGCGACCGATTGCGCAGCAAGGACAAGCAGGATCGTGC 441 consensus_5224#2 GGAGAGTACCGGTTCCG-GCACGGCTACAGCAAGCACAATCCGCGCAAAATGGTACGCAC 206 * * * * ** * ** ** ** * ** ** * *** ** ** * consensus_5224#0 GACGGCCGAGCAGGTGATGGATCCGCGTACGCGCATGATACTGTTCAAGCTGCTGAACCG 650 consensus_5224#1 GACGGCCGAGCAGGTGATGGATCCGCGTACGCGCATGATACTGTTCAAGCTGCTGAACCG 501 consensus_5224#2 CTGGGCGGAGAAGGAGATGCGCAATCTGGTGCGCA------------------------- 241 *** *** *** **** * ***** consensus_5224#0 CGCGATGATCACGGAGATCAACGGGTGCATATCGACCGGG-AAGGAAGCGAACGTGTACC 709 consensus_5224#1 CGCGATGATCACGGAGATCAACGGGTGCATATCGACCGGGTAAGGAAGCGAACGTG---- 557 consensus_5224#2 ------------------------------------------------------------ consensus_5224#0 ACGCCACCGCCGCCAGCGGACGGGACTACGCGATCAAGATCTTTAAAACGTCCATCCTCA 769 consensus_5224#1 ------------------------------------------------------------ consensus_5224#2 ------------------------------------------------------------ consensus_5224#0 CGTTCAAGGATCGGGACAAGTACGTGACGGGAGAGTACCGGTTCCGGCACG 820 consensus_5224#1 --------------------------------------------------- consensus_5224#2 --------------------------------------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||