cluster # 5225

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Anopheles gambiae
cluster # 5225 cluster # 5225 Sequences # 4 consensus # 2

see consensus multiple alignment with clustalw

Direct access to contigs :

consensus_5225#0 length = 1215 sequences # 3

consensus_5225#1 length = 516 sequences # 1

consensusID : consensus_5225#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 1215
fasta sequence

                              [CCGGTGCAACTTCATCAACGAGACGGGCAACATCATCAGCGATCTCGTCATCTGCGACACACTGTCCGCGATGCACTCGAACTACTACAACGCGTCGATCGAGACGCGGCTCGCGCACGCCGCCTCGATCTGCTTCTGGACCAAAACGACCATCAGCATCCGGCAGGCGGAGCTGATGATGAAGAACAACGCGATCGTGGCGCTGAAGCTGTTCGGGTTCGAGGACCACTGCTGCGAGTACTTTAACAACGATGCGCACGCGATCGACATCGGGCTGCGGATAGCGAAGCATTCGCTCGAAACGAACGTGCAGATCGTGTCGGACGCGAGCGATCCGGGCGCGATCCGGATCGATGGCAGTCGGTTCCCGATCGTGGAGCTGCTGCGGCTCGAGCCGAGCGAGGTCGAGACGCTGTTCGAGGCGCTGCAGGGCGTTTCGGCGGACGAGCGTGCACT-GTTCGATGAGATGCGTCCACTGGTTTGCTGCGGGAAGGCGGCTGCTGCCGACGAGGATGATGGTAGGCTGAGCGTGCTGGTGCGCATCCTTGCCCGGGAAGCGGAACGGGAGTGCTTGCCCGTGAGCGATCTGATGGAAATGTTGCTGCAAACGTACGCCGCCATCAAGCGGTACGAAGGAGG------CGGCAGCGTACAACCGACCACGTTCCAGCTTTCGGCCGGCGGTCTGTGTATTGGGCGCGGTCTCTGCATGCGCCTGAAGCCGGCCTTCATTCTGTTTGCGTCGAAGGAAGTGGCCCCGGCACCGGTGGAGCTGTCCGCTGGGGAGAACAGCAGCAGCAGCAGTAAGCCGCGTGACGGTGAAGAGACAGGCGATAGGGAAACGAACCGTTTAATTCGGGCACTGTTGGAGCTGTCCGAGAAGCAGTGCAGCCAGTTGTCGGACATTATCCGCCAGGATCCGAATTACTTTTCTATCTTTAAGCAAAAGCCACTGGAAACGATCCAACAGGCAGGTGAGGTGGCCGTCCCGGAGGCCCACAGGGAGCAGCTGCTGTACGCAAGGCTTAAGGAGAATATTTTGAAAGCACTGGAGCGAAACACGACCGCGAAGGACGACAGCTAAATCATCGGCCACATGCAAAAGAAGCAACTGTGGGTAAGTTTTCACCTCGACTCCTTTTCCACGCACACACACACACATTCCCCGGAAGGTTCCAAAAAAGATGTTTAGAAGTCATTTGTATGCTTTGTGGATTT]

[+] EMBL BM629026             [CCGGTGCAACTTCATCAACGAGACGGGCAACATCATCAGCGATCTCGTCATCTGCGACACACTGTCCGCGATGCACTCGAACTACTACAACGCGTCGATCGAGACGCGGCTCGCGCACGCCGCCTCGATCTGCTTCTGGACCAAAACGACCATCAGCATCCGGCAGGCGGAGCTGATGATGAAGAACAACGCGATCGTGGCGCTGAAGCTGTTCGGGTTCGAGGACCACTGCTGCGAGTACTTTAACAACGATGCGCACGCGATCGACATCGGGCTGCGGATAGCGAAGCATTCGCTCGAAACGAACGTGCAGATCGTGTCGGACGCGAGCGATCCGGGCGCGATCCGGATCGATGGCAGTCGGTTCCCGATCGTGGAGCTGCTGCGGCTCGAGCCGAGCGAGGTCGAGACGCTGTTCGAGGCGCTGCAGGGCGTTTCGGCGGACGAGCGTGCACT GTTCGATGAGATGCGTCCACTGGTTTGCTGCGGGAAGGCGGCTGCTGCCGACGAGGATGATGGTAGGCTGAGCGTGCTGGTGCGCATCCTTGCCCGGGAAGCGGAACGGGAGTGCTTGCCCGTGAGCGATCTGATGGAAATGTTGCTGCAAACGTACGCCGCCATCAAGCGGTACGAAGGGGGCGCGGCCGGCAGCGTACAACCGACCACGTTCC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                      ]
[+] EMBL BX619609             [                                                                                                                                                                                                                                                                                                                                                                                                     TCGAGCCGGGC ANGTCGAGACGCTGTTCGAGGCGCTGCAGGGCGTTTCGGCGGACGAGCGTGCACTGGTTCGATGAGATGCGTCCACTGGTTTGCTGCGGGAAGGCGGCTGCCGCCGACGAGGATGATGGTAGGCTGAGCGTGCTGGTGCGCGTCCTTGCTCGGGAAGCGGAACGGGAGTGCTTGCCCGTGAGCGATCTGATGGAAATGTTGCTGCAAACGTACGCCGCCATCAAGCGGTACGAAGGAGG      CGGCAGCGTACAACCGACCACGTTCCAGCTTTCGGCCGGCGGTCTGTGTATTGGGCGCGGTCTCTGCATGCGCCTGAAGCCGGCCTTCATTCTGTTTGCGTCGAAGG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     ]
[+] EMBL BM620122             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                        ccgCTGATGGAAATGTTGCTGCAAACGTACGCCGCCATCAAGCGGTACGAAGGAGG      CGGCAGCGTACAACCGACCACGTTCCAGCTTTCGGCCGGCGGTCTGTGTATTGGGCGCGGTCTCTGCATGCGCCTGAAGCCGGCCTTCATTCTGTTTGCGTCGAAGGAAGTGGCCCCGGCACCGGTGGAGCTGTCCGCTGGGGAGAACAGCAGCAGCAGCAGTAAGCCGCGTGACGGTGAAGAGACAGGCGATAGGGAAACGAACCGTTTAATTCGGGCACTGTTGGAGCTGTCCGAGAAGCAGTGCAGCCAGTTGTCGGACATTATCCGCCAGGATCCGAATTACTTTTCTATCTTTAAGCAAAAGCCACTGGAAACGATCCAACAGGCAGGTGAGGTGGCCGTCCCGGAGGCCCACAGGGAGCAGCTGCTGTACGCAAGGCTTAAGGAGAATATTTTGAAAGCACTGGAGCGAAACACGACCGCGAAGGACGACAGCTAAATCATCGGCCACATGCAAAAGAAGCAACTGTGGGTAAGTTTTCACCTCGACTCCTTTTCCACGCACACACACACACATTCCCCGGAAGGTTCCAAAAAAGATGTTTAGAAGTCATTTGTATGCTTTGTGGATTT]




>consensus_5225#0
CCGGTGCAACTTCATCAACGAGACGGGCAACATCATCAGCGATCTCGTCATCTGCGACAC
ACTGTCCGCGATGCACTCGAACTACTACAACGCGTCGATCGAGACGCGGCTCGCGCACGC
CGCCTCGATCTGCTTCTGGACCAAAACGACCATCAGCATCCGGCAGGCGGAGCTGATGAT
GAAGAACAACGCGATCGTGGCGCTGAAGCTGTTCGGGTTCGAGGACCACTGCTGCGAGTA
CTTTAACAACGATGCGCACGCGATCGACATCGGGCTGCGGATAGCGAAGCATTCGCTCGA
AACGAACGTGCAGATCGTGTCGGACGCGAGCGATCCGGGCGCGATCCGGATCGATGGCAG
TCGGTTCCCGATCGTGGAGCTGCTGCGGCTCGAGCCGAGCGAGGTCGAGACGCTGTTCGA
GGCGCTGCAGGGCGTTTCGGCGGACGAGCGTGCACTGTTCGATGAGATGCGTCCACTGGT
TTGCTGCGGGAAGGCGGCTGCTGCCGACGAGGATGATGGTAGGCTGAGCGTGCTGGTGCG
CATCCTTGCCCGGGAAGCGGAACGGGAGTGCTTGCCCGTGAGCGATCTGATGGAAATGTT
GCTGCAAACGTACGCCGCCATCAAGCGGTACGAAGGAGGCGGCAGCGTACAACCGACCAC
GTTCCAGCTTTCGGCCGGCGGTCTGTGTATTGGGCGCGGTCTCTGCATGCGCCTGAAGCC
GGCCTTCATTCTGTTTGCGTCGAAGGAAGTGGCCCCGGCACCGGTGGAGCTGTCCGCTGG
GGAGAACAGCAGCAGCAGCAGTAAGCCGCGTGACGGTGAAGAGACAGGCGATAGGGAAAC
GAACCGTTTAATTCGGGCACTGTTGGAGCTGTCCGAGAAGCAGTGCAGCCAGTTGTCGGA
CATTATCCGCCAGGATCCGAATTACTTTTCTATCTTTAAGCAAAAGCCACTGGAAACGAT
CCAACAGGCAGGTGAGGTGGCCGTCCCGGAGGCCCACAGGGAGCAGCTGCTGTACGCAAG
GCTTAAGGAGAATATTTTGAAAGCACTGGAGCGAAACACGACCGCGAAGGACGACAGCTA
AATCATCGGCCACATGCAAAAGAAGCAACTGTGGGTAAGTTTTCACCTCGACTCCTTTTC
CACGCACACACACACACATTCCCCGGAAGGTTCCAAAAAAGATGTTTAGAAGTCATTTGT
ATGCTTTGTGGATTT

consensusID : consensus_5225#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 516
fasta sequence

                              [AGATCGCCGAGGTTAATCGTGAGCTGTGCGGCTCGAGCCGAGCGAGGTCAGACGCTGTTCGAGGCGCTGCAGGGCGTTCGGCGGACGAGCGTGCACTGTTCGATGAGATGCGTCACTGGTTTGCTGCGGGAAGGCGGTGCTGCCGACGAGGATGATGGTAGGCTGAGCGTGCTGGTGCGCATCTTGCCCGGGAAGCGGAACGGGAGTGTTGCCCGTGAGCGATCTGATGGAAATGTTGCTGCAAACGTACGCCGCCATCAAGCGGTACGAAGGGGGGCGCGGCGGCAGCGTACAACCGACACGTTCCAGCTTTCGGGCGGCGGTCTGTGTATTGGGCGCGGTCTCTGCATGCGGCCTGAAGCCGGGCTTCATTCTGTTTGCGTCGAAGGAAGTGGCCCCGGCACCGGTGGAAGCTGTCCGCTGGGGAGAACAGCAGCCAGCAGAGGTAAGCCGCGTGACGGTGGCGAGACAGGCGATACGGAAACGAACCGTTTAATTCCGGGCACTGTTTGGAGC]

[+] EMBL AL695698             [AGATCGCCGAGGTTAATCGTGAGCTGTGCGGCTCGAGCCGAGCGAGGTCAGACGCTGTTCGAGGCGCTGCAGGGCGTTCGGCGGACGAGCGTGCACTGTTCGATGAGATGCGTCACTGGTTTGCTGCGGGAAGGCGGTGCTGCCGACGAGGATGATGGTAGGCTGAGCGTGCTGGTGCGCATCTTGCCCGGGAAGCGGAACGGGAGTGTTGCCCGTGAGCGATCTGATGGAAATGTTGCTGCAAACGTACGCCGCCATCAAGCGGTACGAAGGGGGGCGCGGCGGCAGCGTACAACCGACACGTTCCAGCTTTCGGGCGGCGGTCTGTGTATTGGGCGCGGTCTCTGCATGCGGCCTGAAGCCGGGCTTCATTCTGTTTGCGTCGAAGGAAGTGGCCCCGGCACCGGTGGAAGCTGTCCGCTGGGGAGAACAGCAGCCAGCAGAGGTAAGCCGCGTGACGGTGGCGAGACAGGCGATACGGAAACGAACCGTTTAATTCCGGGCACTGTTTGGAGC]




>consensus_5225#1
AGATCGCCGAGGTTAATCGTGAGCTGTGCGGCTCGAGCCGAGCGAGGTCAGACGCTGTTC
GAGGCGCTGCAGGGCGTTCGGCGGACGAGCGTGCACTGTTCGATGAGATGCGTCACTGGT
TTGCTGCGGGAAGGCGGTGCTGCCGACGAGGATGATGGTAGGCTGAGCGTGCTGGTGCGC
ATCTTGCCCGGGAAGCGGAACGGGAGTGTTGCCCGTGAGCGATCTGATGGAAATGTTGCT
GCAAACGTACGCCGCCATCAAGCGGTACGAAGGGGGGCGCGGCGGCAGCGTACAACCGAC
ACGTTCCAGCTTTCGGGCGGCGGTCTGTGTATTGGGCGCGGTCTCTGCATGCGGCCTGAA
GCCGGGCTTCATTCTGTTTGCGTCGAAGGAAGTGGCCCCGGCACCGGTGGAAGCTGTCCG
CTGGGGAGAACAGCAGCCAGCAGAGGTAAGCCGCGTGACGGTGGCGAGACAGGCGATACG
GAAACGAACCGTTTAATTCCGGGCACTGTTTGGAGC

consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_5225#0      CCGGTGCAACTTCATCAACGAGACGGGCAACATCATCAGCGATCTCGTCATCTGCGACAC 60
consensus_5225#1      ------------------------------------------------------------
                                                                                  

consensus_5225#0      ACTGTCCGCGATGCACTCGAACTACTACAACGCGTCGATCGAGACGCGGCTCGCGCACGC 120
consensus_5225#1      ------------------------------------------------------------
                                                                                  

consensus_5225#0      CGCCTCGATCTGCTTCTGGACCAAAACGACCATCAGCATCCGGCAGGCGGAGCTGATGAT 180
consensus_5225#1      ------------------------------------------------------------
                                                                                  

consensus_5225#0      GAAGAACAACGCGATCGTGGCGCTGAAGCTGTTCGGGTTCGAGGACCACTGCTGCGAGTA 240
consensus_5225#1      ------------------------------------------------------------
                                                                                  

consensus_5225#0      CTTTAACAACGATGCGCACGCGATCGACATCGGGCTGCGGATAGCGAAGCATTCGCTCGA 300
consensus_5225#1      ------------------------------------------------------------
                                                                                  

consensus_5225#0      AACGAACGTGCAGATCGTGTCGGACGCGAGCGATCCGGGCGCGATCCGGATCGATGGCAG 360
consensus_5225#1      -----------------------------------------------AGATCGCCGA--- 10
                                                                      *****  *    

consensus_5225#0      TCGGTTCCCGATCGTGGAGCTGCTGCGGCTCGAGCCGAGCGAGGTCGAGACGCTGTTCGA 420
consensus_5225#1      --GGTT---AATCGTG-AGCTG-TGCGGCTCGAGCCGAGCGAGGTC-AGACGCTGTTCGA 62
                        ****    ****** ***** *********************** *************

consensus_5225#0      GGCGCTGCAGGGCGTTTCGGCGGACGAGCGTGCACTGTTCGATGAGATGCGTCCACTGGT 480
consensus_5225#1      GGCGCTGCAGGGCGTT-CGGCGGACGAGCGTGCACTGTTCGATGAGATGCGTC-ACTGGT 120
                      **************** ************************************ ******

consensus_5225#0      TTGCTGCGGGAAGGCGGCTGCTGCCGACGAGGATGATGGTAGGCTGAGCGTGCTGGTGCG 540
consensus_5225#1      TTGCTGCGGGAAGGCGG-TGCTGCCGACGAGGATGATGGTAGGCTGAGCGTGCTGGTGCG 179
                      ***************** ******************************************

consensus_5225#0      CATCCTTGCCCGGGAAGCGGAACGGGAGTGCTTGCCCGTGAGCGATCTGATGGAAATGTT 600
consensus_5225#1      CATC-TTGCCCGGGAAGCGGAACGGGAGTG-TTGCCCGTGAGCGATCTGATGGAAATGTT 237
                      **** ************************* *****************************

consensus_5225#0      GCTGCAAACGTACGCCGCCATCAAGCGGTACGAAGGAGG------CGGCAGCGTACAACC 654
consensus_5225#1      GCTGCAAACGTACGCCGCCATCAAGCGGTACGAAGGGGGGCGCGGCGGCAGCGTACAACC 297
                      ************************************ **      ***************

consensus_5225#0      GACCACGTTCCAGCTTTCGGCCGGCGGTCTGTGTATTGGGCGCGGTCTCTGCATGCG-CC 713
consensus_5225#1      GAC-ACGTTCCAGCTTTCGGGCGGCGGTCTGTGTATTGGGCGCGGTCTCTGCATGCGGCC 356
                      *** **************** ************************************ **

consensus_5225#0      TGAAGCCGGCCTTCATTCTGTTTGCGTCGAAGGAAGTGGCCCCGGCACCGGTGGA-GCTG 772
consensus_5225#1      TGAAGCCGGGCTTCATTCTGTTTGCGTCGAAGGAAGTGGCCCCGGCACCGGTGGAAGCTG 416
                      ********* ********************************************* ****

consensus_5225#0      TCCGCTGGGGAGAACAGCAGC-AGCAGCAGTAAGCCGCGTGACGGTGAAGAGACAGGCGA 831
consensus_5225#1      TCCGCTGGGGAGAACAGCAGCCAGCAGAGGTAAGCCGCGTGACGGTGGCGAGACAGGCGA 476
                      ********************* *****  ******************  ***********

consensus_5225#0      TAGGGAAACGAACCGTTTAATTC-GGGCACTGTT-GGAGCTGTCCGAGAAGCAGTGCAGC 889
consensus_5225#1      TACGGAAACGAACCGTTTAATTCCGGGCACTGTTTGGAGC-------------------- 516
                      ** ******************** ********** *****                    

consensus_5225#0      CAGTTGTCGGACATTATCCGCCAGGATCCGAATTACTTTTCTATCTTTAAGCAAAAGCCA 949
consensus_5225#1      ------------------------------------------------------------
                                                                                  

consensus_5225#0      CTGGAAACGATCCAACAGGCAGGTGAGGTGGCCGTCCCGGAGGCCCACAGGGAGCAGCTG 1009
consensus_5225#1      ------------------------------------------------------------
                                                                                  

consensus_5225#0      CTGTACGCAAGGCTTAAGGAGAATATTTTGAAAGCACTGGAGCGAAACACGACCGCGAAG 1069
consensus_5225#1      ------------------------------------------------------------
                                                                                  

consensus_5225#0      GACGACAGCTAAATCATCGGCCACATGCAAAAGAAGCAACTGTGGGTAAGTTTTCACCTC 1129
consensus_5225#1      ------------------------------------------------------------
                                                                                  

consensus_5225#0      GACTCCTTTTCCACGCACACACACACACATTCCCCGGAAGGTTCCAAAAAAGATGTTTAG 1189
consensus_5225#1      ------------------------------------------------------------
                                                                                  

consensus_5225#0      AAGTCATTTGTATGCTTTGTGGATTT 1215
consensus_5225#1      --------------------------