These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5231#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 662 fasta sequence [CCGCGGACGCGTGGGTGAGGACCAATCAGGCAATGCGATCTTTCTGCCAAAGAATGAAAAGCAAGCACTCCTCATGGGACTGACCCTGTACGAGAAGGGCAAAGCGGCAATGAAGGCGGACAGCTGCGAGGAAGCGCTGCTGCTGCTGCTGGAAGCGGACCACGACTTCCGGAACTGCAACTCCCAGCTGCTGAACGTGGTCGACAACTACGCACTGCTCAATCTCGACATTGTCTGGTGCTATCTAAGACTGAAGAACCTAAACCAACTGCCCGACGCGGAGGAGCGGCTGAAAGTGTGCGAGCTCAAGTTCCAGCAGAGCTACGGCAAAAACATGGCCCGCGTCGCGGCAATCCGTGGCGAACAGTCGAACGAGAAGATACTGCTCGTGCGGCTGCACCTGCTGAAAGCCGTCCTGTACTTCCACCAGAACAAGCGCGACGATGCGCGGACCATGTTCCGGGTGGTGGAAACGGAGCTGCTGAAGCTGCGCATCGACGACGACTGTCTGAGCCGGCTGATGGAGTGTGGGTACGGGATGAAGGAGTGCCGCATAGCGCTGCGCGCCTGCTCGAACGACGTGGAGGCAGCGATCGAGTTCATCCACAGCCAGCGCGAGACGCGCCGGGCGAACGAGCGCCGCTCGGAACGGGAACGCCAGT] [+] EMBL BM596793 [CCGCGGACGCGTGGGTGAGGACCAATCAGGCAATGCGATCTTTCTGCCAAAGAATGAAAAGCAAGCACTCCTCATGGGACTGACCCTGTACGAGAAGGGCAAAGCGGCAATGAAGGCGGACAGCTGCGAGGAAGCGCTGCTGCTGCTGCTGGAAGCGGACCACGACTTCCGGAACTGCAACTCCCAGCTGCTGAACGTGGTCGACAACTACGCACTGCTCAATCTCGACATTGTCTGGTGCTATCTAAGACTGAAGAACCTAAACCAACTGCCCGACGCGGAGGAGCGGCTGAAAGTGTGCGAGCTCAAGTTCCAGCAGAGCTACGGCAAAAACATGGCCCGCGTCGCGGCAATCCGTGGCGAACAGTCGAACGAGAAGATACTGCTCGTGCGGCTGCACCTGCTGAAAGCCGTCCTGTACTTCCACCAGAACAAGCGCGACGATGCGCGGACCATGTTCCGGGTGGTGGAAACGGAGCTGCTGAAGCTGCGCATCGACGACGACTGTCTGAGCCGGCTGATGGAGTGTGGGTACGGGATGAAGGAGTGCCGCATAGCGCTGCGCGCCTGCTCGAACGACGTGGAGGCAGCGATCGAGTTCATCCACAGCCAGCGCGAGACGCGCCGGGCGAACGAGCGCCGCTCGGAACGGGAACGCCAGT] consensusID : consensus_5231#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 660 fasta sequence [CCGCCCACGCGTCCGAATTATTCAGCACAAAAAAGCACGAAAAATCCCCCGACAACCGGCAGCGGCACAGTTCCTTCTGCCATGTCCGGGTTAACCTGTCTTCCTGCCTGTTTCTGTTGAGTGATTCGAACATTCTCTTCACTTCGTTGGCTGTGTGTTTTTTTGTGAAGCGTATCAAAACAAAAAAGTCAATTCTACGCGTTCAACAGCGCGGTGTGCCATCGGACATCAATCACCATCACCACGCAAACCACAATGTCGTCCGAGTTACAGCACGAAAATCATCTCATTCAGCTGCGTGCAAAACTGAACGAGCGTAAAATTAAGCTATGGGAGGTGCCATACATGCAGGTGGAAGGTGATGAGCAGCGGCACAGCAACGGCGAAGAGATGCTCCGGCTGGCCGAACAGTTCGGTGCCGAGCTCGGTATTGCGACGGAGCTCTGCCTCCGGACGCTGACCGCACTGCAGCGGAATGCGCTGGACAAGCTGCAGTCGAAGGATGAGTTCCAGCGGACGGGCCTCGCGACGGTACGTGTCCGTGCACCGACCCAGACCGGTTCGAACCGGGCAGTTCGATCTGAAAGTGCAGGTCAC-GGAAACGGGCAGCCAGCTTTGCGAGCTGATCGGACAACGGCTGTCGCTCGATGCTCGGAAAAT] [+] EMBL BM656287 [CCGCCCACGCGTCCGAATTATTCAGCACAAAAAAGCACGAAAAATCCCCCGACAACCGGCAGCGGCACAGTTCCTTCTGCCATGTCCGGGTTAACCTGTCTTCCTGCCTGTTTCTGTTGAGTGATTCGAACATTCTCTTCACTTCGTTGGCTGTGTGTTTTTTTGTGAAGCGTATCAAAACAAAAAAGTCAATTCTACGCGTTCAACAGCGCGGTGTGCCATCGGACATCAATCACCATCACCACGCAAACCACAATGTCGTCCGAGTTACAGCACGAAAATCATCTCATTCAGCTGCGTGCAAAACTGAACGAGCGTAAAATTAAGCTATGGGAGGTGCCATACATGCAGGTGGAAGGTGATGAGCAGCGGCACAGCAACGGCGAAGAGATGCTCCGGCTGGCCGAACAGTTCGGTGCCGAGCTCGGTATTGCGACGGAGCTCTGCCTCCGGACGCTGACCGCACTGCAGCGGAATGCGCTGGACAAGCTGCAGTCGAAGGATGAGTTCCAGCGGACGGGCCTCGCGACGGTACGTGTCCGTGCACCGACCCAGACCGGTTCGAACCGGGCAGTTCGATCTGAAAGTGCAGGTCAC GGAAACGGGCAGCCAGCTTTGCGAGCTGATCGGACAACGGCTGTCGCTCGATGCTCGGAAAAT] [+] EMBL BM650876 [ CCGAATTATTCAGCACAAAAAAGCACGAAAAATCCCCCGACAACCGGCAGCGGCACAGTTCCTTCTGCCATGTCCGGGTTAACCTGTCTTCCTGCCTGTTTCTGTTGAGTGATTCGAACATTCTCTTCACTTCGTTGGCTGTGTGTTTTTTTGTGAAGCGTATCAAAACAAAAAAGTCAATTCTACGCGTTCAACAGCGCGGTGTGCCATCGGACATCAATCACCATCACCACGCAAACCACAATGTCGTCCGAGTTACAGCACGAAAATCATCTCATTCAGCTGCGTGCAAAACTGAACGAGCGTAAAATTAAGCTATGGGAGGTGCCATACATGCAGGTGGAAGGTGATGAGCAGCGGCACAGCAACGGCGAAGAGATGCTCCGGCTGGCCGAACAGTTCGGTGCCGAGCTCGGTATTGCGACGGAGCTCTGCCTCCGGACGCTGACCGCACTGCAGCGGAATGCGCTGGACAAGCTGCAGTCGAAGGATGAGTTCCAGCGGACGGGCCTCGCGACGGTACGTGTCCGTGCACCGACCCAGACCGGTTCGAACCGGG AGTTCGATCTGAAGGTGCAGGTCACGGGAAACGGGCAGCCAGCTTTGCGAGCTGATCGGACAACGGCTGTCG ] consensusID : consensus_5231#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 545 fasta sequence [GCAGAATTCCCGAGGTTAAGGAGCTCTGCCTCCGGACGCTGACCGCACTGCAGNGGAATGCGCTGGACAAGCTGCAGTCGAAGNGATGAGTTCCAGCGGACGGGCCTCGCGACGGTACGTGTCTGTGCACCGACCCAGACCGGTTCGAACCGGGAGTTCGATCTGAAGGTGCAGGTCACGGAAACGGGCAGCCAGCTTTGCGAGCTGATCGGACAACGGCTGTCGCTCGATGCTCGGAAAATCAAGCTGGTATTGCTCGGGCAAGATCATAAACTGGAGTGCGTTACACTCCAGGAGCAGAAGGTATCGAACGGGGCACCGTGATTGGCCCTGGTGATGGCGTGCAGCGACGGACCGAAGCGAAGCGCGAATGCTCGACGTACGATCGTGTGCACAAGATTCGCTCCGATGCCGAGATTGCTGATCAACGAGAACGATAGCTCGAAACTTTCTGAGCATTGAGGACCAATCAGGCGATGCGATCTTTCTGCAAAGAATGAAACAGCAAGCACTCCTCATGGGACTCANCCTGGTACGAGCAAGGG] [+] EMBL AL696169 [GCAGAATTCCCGAGGTTAAGGAGCTCTGCCTCCGGACGCTGACCGCACTGCAGNGGAATGCGCTGGACAAGCTGCAGTCGAAGNGATGAGTTCCAGCGGACGGGCCTCGCGACGGTACGTGTCTGTGCACCGACCCAGACCGGTTCGAACCGGGAGTTCGATCTGAAGGTGCAGGTCACGGAAACGGGCAGCCAGCTTTGCGAGCTGATCGGACAACGGCTGTCGCTCGATGCTCGGAAAATCAAGCTGGTATTGCTCGGGCAAGATCATAAACTGGAGTGCGTTACACTCCAGGAGCAGAAGGTATCGAACGGGGCACCGTGATTGGCCCTGGTGATGGCGTGCAGCGACGGACCGAAGCGAAGCGCGAATGCTCGACGTACGATCGTGTGCACAAGATTCGCTCCGATGCCGAGATTGCTGATCAACGAGAACGATAGCTCGAAACTTTCTGAGCATTGAGGACCAATCAGGCGATGCGATCTTTCTGCAAAGAATGAAACAGCAAGCACTCCTCATGGGACTCANCCTGGTACGAGCAAGGG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_5231#1 CCGCCCACGCGTCCGAATTATTCAGCACAAAAAAGCACGAAAAATCCCCCGACAACCGGC 60 consensus_5231#2 -----------GCAGAATTCCCGAGGTTAAGGAGCTCTG------CCTCCGGACGCTGAC 43 consensus_5231#0 ------CCGCGGACGCGTGGGTGAGGACCAATCAGGCAATGCGATCTTTCTGCCAAAGAA 54 * * ** * * * * consensus_5231#1 AGCGGCACAGTTCCTTCTGCCATGTCCGGGTTAACCTGTCTTCCTGCCTGTTTCTGTTGA 120 consensus_5231#2 CGCACTGCAGNGGAATGCGCTGGACAAGCTGCAGTCGAAGNGATGAGTTCCAGCGGACGG 103 consensus_5231#0 TGAAAAGCAAGCACTCCTCATGGGACTGACCCTGTACGAGAAGGGCAAAGCGGCAATGAA 114 * ** * * consensus_5231#1 GTGATTCGAACATTCTCTTCACTTCGTTGGCTGTGTGTTTTTTTGTGAAGCGTATCA--A 178 consensus_5231#2 GCCTCGCGACGGTACGTGTCTGTGCACCGACCCAG-ACCGGTTCGAACCGGGAGTTC--G 160 consensus_5231#0 GGCGGACAGC--TGCGAGGAAGCGCTGCTGCTGCTGCTGGAAGCGGACCACGACTTCCGG 172 * * * * * * * * * consensus_5231#1 AACAAAAAAGTCAATTCTACGCGTTCAACAGCGCGGTGTGC---CATCGGAC--ATCAAT 233 consensus_5231#2 ATCTGAAGGTGCAGGTCACGGAAACGGGCAGCCAGCTTTGC---GAGCTGATCGGACAAC 217 consensus_5231#0 AACTGCAACTCCCAGCTGCTGAACGTGGTCGACAACTACGCACTGCTCAATCTCGACATT 232 * * * * * * * ** * ** consensus_5231#1 CACCATCACCA-CGCAAACCACAATGTC-GTCCGAGTTACAGCACGAAAATCATCTCATT 291 consensus_5231#2 GGCTGTCGCT--CGATGCTCGGAAAATC-AAGCTGGT-ATTGCTCGGGCAAGATCATAAA 273 consensus_5231#0 GTCTGGTGCTATCTAAGACTGAAGAACCTAAACCAACTGCCCGACGCGGAGGAGCGGCTG 292 * * * * * * ** * * * consensus_5231#1 CAGCTGCGTG---CAAAACTGAACGAGCG-TAAAATTAAGCTATGGGAGGTGCCATACAT 347 consensus_5231#2 CTGGAGTGCG---TTACACTCCAGGAGCA-GAAGGT---ATCGAACGGGGCACCGTGATT 326 consensus_5231#0 AAAGTGTGCGAGCTCAAGTTCCAGCAGAGCTACGGCAAAAACATGGCCCGCGTCGCGGCA 352 * * * * * * ** * * * consensus_5231#1 GCAGGTGGAAGGTGA-TGAGCAGCGGCACAGCAACGGCGAAGA-GATGCTCCGGCTGGCC 405 consensus_5231#2 GGCCCTGGT-GATGG-CGTGCAGCGACGGACCGA-AGCGAAGC-GCGAAT---GCTCGAC 379 consensus_5231#0 ATCCGTGGCGAACAGTCGAACGAGAAGATACTGCTCGTGCGGCTGCACCTGCTGAAAGCC 412 *** * * * * * * * * * * * consensus_5231#1 GAACAGTTCGGTGC-CGAGCTCGGTAT--TGCGACGGAGCTCTGCCTCCGGACGCTGACC 462 consensus_5231#2 GTACGATCGTGTGCACAAGATTCGCTC--CGATGCCGAGAT-TGCTGATCAACGAGAACG 436 consensus_5231#0 GTCCTGTACTTCCACCAGAACAAGCGCGACGATGCGCGGACCATGTTCCGGGTGGTGGAA 472 * * * * * * * * * consensus_5231#1 GCACTGCAGCGGAATGCGCTGGACAAGCTGCAGTCGAAGGATGAGTTCCAGCGGACGGGC 522 consensus_5231#2 ATAGCTCGAAACTTTCTGAGCATTGAGGACCAATCAGGCGATGCGATCTTTCTGCAAAGA 496 consensus_5231#0 ACGGAGCTGCTGAAGCTGCGCATCGACGA-CGACTGTCTGAGCCGGCTGATGGAGTGTGG 531 * * * * ** * * consensus_5231#1 CTCGCGACGGTACGTGTCCGTGCACCGACC-CAGACCGGTTCGAACCGGGCAGTTCGATC 581 consensus_5231#2 AT-GAAACAGCAAGCACTCCTCATGGGACT-CANCCTGGTACGAGCAAGGG--------- 545 consensus_5231#0 GTACGGGATGAAGGAGTGCCGCATAGCGCTGCGCGCCTGCTCGAACGACGTGGAGGCAGC 591 * * * * * * * * * *** * * consensus_5231#1 TGAAAGTGCAGGTCACGGAAACGGGCAGCCAGCTTTGCGAGCTGATCGGACAACGGCTGT 641 consensus_5231#2 ------------------------------------------------------------ consensus_5231#0 GATCGAGTTCATCCACAGCCAGCGCGAGACGCGCCGGGCGAACGAGCGCCGCTCGGAACG 651 consensus_5231#1 CGCTCGATGCTCGGAAAAT 660 consensus_5231#2 ------------------- consensus_5231#0 GGAACGCCAGT-------- 662 |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||