These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5234#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1403 fasta sequence [AACTTGTAGCGGGATAATCGGTTAAAGAAGCCATTTTATTTTATTTTAAAGAAGATCTCATAAACAATCACGCCAACCATATGCTGCACAACCGCGGCACGAACTACTTATGTTTGGGAAACGAATGACCAAAAACCATTTGGAATCTGTCATTTAAATATAAATATATATACATACATGTGTCATTATCATCCTCACTGTGCAAAACTACACATCCTCATATAGCGTTACGAGGGACGAGTTGTTCAATGCGGCAAGCGAAACGCGAATAGAACTTTATTTTAGTCTAAGTAACAAATCACATCGACTTTGAAAATAGTATAAACATATTACAAGGTTGAGATTAGTGCGGAGAGGGTTTGAAGTGTTTCACAAAACAGCAAAAAAAACTCTGCGGACAGGTTTAGTTTCAAAAATTGTATGCAAAACGAGGCGGTGCATGTAATTCAATTAATGGACGATAATTCAGTGTTAAAAAATAGCAGAAAACAAACATTTGACGTATGTATGTGTATACGTTCATGTTCGAAAAAAGTATTTTTATCGTACGTTTCAAAAAACCAAATATGCATCTACATGTGCCTACTTTGCAGCTGCAGTGAAAGATAGAAGGAATTATTCATGTCCTAATATGTAGACGTTCCTCCATAGGCTTTAATCAACCGGTTAACATTGAACTCGTTCACTCTCCGCAAGGTGTAAAGCCGTGCAAAAGCATCGCTACTCCACGCATCTATGCCATGCTACGCTTTCAAAGCAGCGGCAAAGCATTATCTTTCTAGCTACACATTTTGTTCGCAATTGCAATGGAATGCAATTTGTGAGGTCACCGTACACTGCAATCAAGCGGACTCGTTTTTCTACATATCTTTTTCGCGCGACCACCACCACACCTCTTAGTATGAACCTATAACAAAAGTCTTATGAAAGTTGTTCAACTTCAACAAGTGTAACTTTAAAAGCTTACCATTCGGCAACAATTCCTTCATTTTCGCCTCATTGTGCACACTCGCGGTGTGCTGTTGGCAGAATGAATCCGATGATCTGGATTGCTTTTGATTAGCACACTGTAAAGTGCTTCTACATTTGATCTGCTGCGTTCTTGAGCAACTCACGAGCCCCTATCTCACGAAAACGATTAGAACCAGTCGGATACAAACACATCGAAATGTATCAGAATGAAACTAAAACTAAAGCGCAACAGAGCCCCGCAGACAAAATAGAAAACGTATTAGGATACGCGTGCGTCAAGCTAGTACAGTTTCTTAATCAACCGACCGGCAAAAACCAGAGCAAGGTAAATTATTGGTCATCATAATTGTTGTCATAATTAAAAGTATATATATACATATATATATATACATATATATATTTAGCAAAATATATACGAGGGAACCTGGTCC] [+] EMBL BX614823 [AACTTGTAGCGGGATAATCGGTTAAAGAAGCCATTTTATTTTATTTTAAAGAAGATCTCATAAACAATCACGCCAACCATATGCTGCACAACCGCGGCACGAACTACTTATGTTTGGGAAACGAATGACCAAAAACCATTTGGAATCTGTCATTTAAATATAAATATATATACATACATGTGTCATTATCATCCTCACTGTGCAAAACTACACATCCTCATATAGCGTTACGAGGGACGAGTTGTTCAATGCGGCAAGCGAAACGCGAATAGAACTTTATTTTAGTCTAAGTAACAAATCACATCGACTTTGAAAATAGTATAAACATATTACAAGGTTGAGATTAGTGCGGAGAGGGTTTGAAGTGTTTCACAAAACAGCAAAAAAAACTCTGCGGACAGGTTTAGTTTCAAAAATTGTATGCAAAACGAGGCGGTGCATGTAATTCAATTAATGGACGATAATTCAGTGTTAAAAAATAGCAGAAAACAAACATTTGACGTATGTATGTGTATACG ] [+] EMBL BX618695 [ CGGAGAGGGTTTGAAGTGTTTCACAAAACAGCAAAAAAAACTCTGCGGACAGGTTTAGTTTCAAAAACTGTATGCAAAACGAGGCGGTGCATGTAATTCAATTAATGGACGATAATTCAGTGTTAAAAAATAGCAGAAAACAAACATTTGACGTATGTATGTGTATACGTTCATGTTCGAAAAAAGTATTTTTATCGTACGTTTCAAAAAACCAAATATGCATCTACATGTGCCTACTTTGCAGCTGCAGTGAAAGATAGAAGGAATTATTCATGTCCTAATATGTAGACGTTCCTCCATAGGCTTTAATCAACCGGTTAACATTGAACTCGTTCACTCTCCGCAAGGTGTAAAGCCGTGCAAAAGCATCGCTACTCCACGCATCTATGCCATGCTACGCTTTCAAAGCAGCGGCAAAGCATTATCTTTCTAGCTACACATTTTGTTCGCAATTGCAATGGAATGCAATTTGTGAGGTCACCGTACACTGCAATCAAGCGGACTCGTTTTTCTACATATCTTTTTCGCGCGACCACCACCACACCTCTTAGTATGAACCTATAACAAAAGTCTTATGAAAGTTGTTCAACTTCAACAAGTGTAACTTTAAAAGCTTACCATTCGGCAACAATTCCTTCATTTTCGCCTCATTGTGCACACTCGCGGTGTGCTGTTGGCAGAATGAATCCGATGATCT ] [+] EMBL BX608533 [ AAAGCATCGCTACTCCACGCATCTATGCCATGCTACGCGTTCAAAGCAGCGGCAAAGCATTATCTTTCTAGCTACACATTTTGTTCGCAATTGCAATGGAATGCAATTTGTGAGGTCACCGTACACTGCAATCAAGCGGACTCGTTTTTCTACATATCTTTTTCGCGCGACCACCACCACACCTCTTAGTATGAACCTATAACAAAAGTCTTATGAAAGTTGTTCAACTTCAACAAGTGTAACTTTAAAAGCTTACCATTCGGCAACAATTCCTTCATTTTCGCCTCATTGTGCACACTCGCGGTGTGCTGTTGGCAGAATGAATCCGATGATCTGGATTGCTTTTGATTAGCACACTGTAAAGTGCTTCTACATTTGATCTGCTGCGTTCTTGAGCAACTCACGAGCCCCTATCTCACGAAAACGATTAGAACCAGTCGGATACAAACACATCGAAATGTATCAGAATGAAACTAAAACTAAAGCGCAACAGAGCCCCGCAGACAAAATAGAAAACGTATTAGGATACGCGTGCGTCAAGCTAGTACAGTTTCTTAATCAACCGACCGGCAAAAACCAGAGCAAGGTAAATTATTGGTCATCATAATTGTTGTCATAATTAAAAGTATATATATACATATATATATATACATATATATATTTAGCAAAATATATACGAGGGAACCTGGTCC] consensusID : consensus_5234#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 460 fasta sequence [GTGATAAGTGGCAAAAAACNAGTCGTACCCGACTGGGTCATGTTTGAGAGCAAATTTGAGCTGTTGGTCACAAAAAGTCATACACACAGCGAAACACAAACAGCATTTTAAGCTCAGTTAGGTGGACGTATACATCTTAGGATGTGTTTTATTCGAACTTCTTTAAAAAAATAACTATCACATGTTATGGAAGCAGTATTACCAATGTACAGAAAGTTGTTCGTAGGATGCCCATCGTATCAAGTTCATTGAAGCTTTTCGTTTCATGTAATGTAAATTTAAAAAAAAAAATCTGTTGCTTTCAACGCTTTACTTTGTTTAGTTAGGAAAAAGANNAACCAGTAATTTATGTTGGAACTTGGTAGCGGGATAATCGGTTAAAGAAGCCATTTTATTTTAAAGAAGATCTCATAAACAATCACGCCAACCATATGCTGNCACAACCTCGCGGCNACGAACT] [+] EMBL BX619661 [GTGATAAGTGGCAAAAAACNAGTCGTACCCGACTGGGTCATGTTTGAGAGCAAATTTGAGCTGTTGGTCACAAAAAGTCATACACACAGCGAAACACAAACAGCATTTTAAGCTCAGTTAGGTGGACGTATACATCTTAGGATGTGTTTTATTCGAACTTCTTTAAAAAAATAACTATCACATGTTATGGAAGCAGTATTACCAATGTACAGAAAGTTGTTCGTAGGATGCCCATCGTATCAAGTTCATTGAAGCTTTTCGTTTCATGTAATGTAAATTTAAAAAAAAAAATCTGTTGCTTTCAACGCTTTACTTTGTTTAGTTAGGAAAAAGANNAACCAGTAATTTATGTTGGAACTTGGTAGCGGGATAATCGGTTAAAGAAGCCATTTTATTTTAAAGAAGATCTCATAAACAATCACGCCAACCATATGCTGNCACAACCTCGCGGCNACGAACT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_5234#0 AACTTGTAGCGGGATAATCGGTTAAAGAAGCCATTTTATTTTATTTTAAAGAAGATCTCA 60 consensus_5234#1 ------------------------------------------------------------ consensus_5234#0 TAAACAATCACGCCAACCATATGCTGCACAACCGCGGCACGAACTACTTATGTTTGGGAA 120 consensus_5234#1 ------------------------------------------------------------ consensus_5234#0 ACGAATGACCAAAAACCATTTGGAATCTGTCATTTAAATATAAATATATATACATACATG 180 consensus_5234#1 ------------------------------------------------------------ consensus_5234#0 TGTCATTATCATCCTCACTGTGCAAAACTACACATCCTCATATAGCGTTACGAGGGACGA 240 consensus_5234#1 ------------------------------------------------------------ consensus_5234#0 GTTGTTCAATGCGGCAAGCGAAACGCGAATAGAACTTTATTTTAGTCTAAGTAACAAATC 300 consensus_5234#1 ----------GTGATAAGTG----GCAAAAAACNAGTCGTACCCGACTGGGTCATGTTTG 46 * * *** * ** ** * * * * ** ** * * consensus_5234#0 ACATCGACTTTGAA--AATAGTATAAACATATTACAAGGTTGAGATTAGTGCGGAGAGGG 358 consensus_5234#1 AGAGCAAATTTGAGCTGTTGGTCACAAAAAGTCATACACAC-AGCGAAACACAAACAGCA 105 * * * * ***** * ** ** * * * * ** * * * ** consensus_5234#0 TTTGAAGTGTTTCACAAAACAGCAAAAAAAACTCTGCGGACAGGTTTAGTTTCAAAAATT 418 consensus_5234#1 TTTTAAG---CTCAGTTAGGTGGACGTATACATCTTAGGATGTGTTTTATTC--GAACTT 160 *** *** *** * * * * * *** *** **** ** ** ** consensus_5234#0 GTATGCAAAACGAGGCGGTGCATGTAATTCAATTAATGGACGATAATTCAGTGTTAAAAA 478 consensus_5234#1 CTTTAAAAAAATAACTATCACATGTTAT---------GGAAG------CAGTATTACCAA 205 * * **** * ***** ** *** * **** *** ** consensus_5234#0 ATAGCAGAAAACAAACATTTGACGTATGTATGT-GTAT-ACGTTCATGTTCGAAAAAAGT 536 consensus_5234#1 TGTACAGAAAGT---TGTTCGTAGGATGCCCATCGTATCAAGTTCA---TTGAAGCTTTT 259 ****** ** * * *** * **** * ***** * *** * consensus_5234#0 ATTTTTATCGTACGT---TTCAAAAAACCAAATATGCATCTACATGTGCCT-ACTTTGCA 592 consensus_5234#1 CGTTTCATGTAATGTAAATTTAAAAAAAAAAATCTGTTGCTTTCAACGCTTTACTTTGTT 319 *** ** * ** ** ****** **** ** ** ** * ****** consensus_5234#0 GCTGCAGTGAAAGATAGAAGGAATTATTCATGTCCTAATATGTAGACGTTCCTCCATAGG 652 consensus_5234#1 TAGTTAGGAAAAAGANNAACCAGTAATTTATGTTGGAACTTGGTAGCGGGAT--AATCGG 377 ** *** ** * * *** **** ** ** ** ** ** consensus_5234#0 CTTTAATCAACCGGTTAACATTGAACTCGTTCACTCTCCGCAAGGTGTAAAGCCGTGCAA 712 consensus_5234#1 -TTAAAGAAGCCATTTTATTTTAAAGAAGATC-----TCATAAACAATCACGCCAACCAT 431 ** ** * ** ** * ** ** * ** * ** * * *** ** consensus_5234#0 AAGC-ATCGCTACTCCACGCATCTATGCCATGCTACGCTTTCAAAGCAGCGGCAAAGCAT 771 consensus_5234#1 ATGCTGNCACAACCTCGCGGCNACGAACT------------------------------- 460 * ** * * ** * ** * consensus_5234#0 TATCTTTCTAGCTACACATTTTGTTCGCAATTGCAATGGAATGCAATTTGTGAGGTCACC 831 consensus_5234#1 ------------------------------------------------------------ consensus_5234#0 GTACACTGCAATCAAGCGGACTCGTTTTTCTACATATCTTTTTCGCGCGACCACCACCAC 891 consensus_5234#1 ------------------------------------------------------------ consensus_5234#0 ACCTCTTAGTATGAACCTATAACAAAAGTCTTATGAAAGTTGTTCAACTTCAACAAGTGT 951 consensus_5234#1 ------------------------------------------------------------ consensus_5234#0 AACTTTAAAAGCTTACCATTCGGCAACAATTCCTTCATTTTCGCCTCATTGTGCACACTC 1011 consensus_5234#1 ------------------------------------------------------------ consensus_5234#0 GCGGTGTGCTGTTGGCAGAATGAATCCGATGATCTGGATTGCTTTTGATTAGCACACTGT 1071 consensus_5234#1 ------------------------------------------------------------ consensus_5234#0 AAAGTGCTTCTACATTTGATCTGCTGCGTTCTTGAGCAACTCACGAGCCCCTATCTCACG 1131 consensus_5234#1 ------------------------------------------------------------ consensus_5234#0 AAAACGATTAGAACCAGTCGGATACAAACACATCGAAATGTATCAGAATGAAACTAAAAC 1191 consensus_5234#1 ------------------------------------------------------------ consensus_5234#0 TAAAGCGCAACAGAGCCCCGCAGACAAAATAGAAAACGTATTAGGATACGCGTGCGTCAA 1251 consensus_5234#1 ------------------------------------------------------------ consensus_5234#0 GCTAGTACAGTTTCTTAATCAACCGACCGGCAAAAACCAGAGCAAGGTAAATTATTGGTC 1311 consensus_5234#1 ------------------------------------------------------------ consensus_5234#0 ATCATAATTGTTGTCATAATTAAAAGTATATATATACATATATATATATACATATATATA 1371 consensus_5234#1 ------------------------------------------------------------ consensus_5234#0 TTTAGCAAAATATATACGAGGGAACCTGGTCC 1403 consensus_5234#1 -------------------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||