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Anopheles gambiae
cluster # 5234 cluster # 5234       Sequences # 4       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_5234#0 length = 1403 sequences # 3  
consensus_5234#1 length = 460 sequences # 1  

consensusID : consensus_5234#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 1403
fasta sequence
                              [AACTTGTAGCGGGATAATCGGTTAAAGAAGCCATTTTATTTTATTTTAAAGAAGATCTCATAAACAATCACGCCAACCATATGCTGCACAACCGCGGCACGAACTACTTATGTTTGGGAAACGAATGACCAAAAACCATTTGGAATCTGTCATTTAAATATAAATATATATACATACATGTGTCATTATCATCCTCACTGTGCAAAACTACACATCCTCATATAGCGTTACGAGGGACGAGTTGTTCAATGCGGCAAGCGAAACGCGAATAGAACTTTATTTTAGTCTAAGTAACAAATCACATCGACTTTGAAAATAGTATAAACATATTACAAGGTTGAGATTAGTGCGGAGAGGGTTTGAAGTGTTTCACAAAACAGCAAAAAAAACTCTGCGGACAGGTTTAGTTTCAAAAATTGTATGCAAAACGAGGCGGTGCATGTAATTCAATTAATGGACGATAATTCAGTGTTAAAAAATAGCAGAAAACAAACATTTGACGTATGTATGTGTATACGTTCATGTTCGAAAAAAGTATTTTTATCGTACGTTTCAAAAAACCAAATATGCATCTACATGTGCCTACTTTGCAGCTGCAGTGAAAGATAGAAGGAATTATTCATGTCCTAATATGTAGACGTTCCTCCATAGGCTTTAATCAACCGGTTAACATTGAACTCGTTCACTCTCCGCAAGGTGTAAAGCCGTGCAAAAGCATCGCTACTCCACGCATCTATGCCATGCTACGCTTTCAAAGCAGCGGCAAAGCATTATCTTTCTAGCTACACATTTTGTTCGCAATTGCAATGGAATGCAATTTGTGAGGTCACCGTACACTGCAATCAAGCGGACTCGTTTTTCTACATATCTTTTTCGCGCGACCACCACCACACCTCTTAGTATGAACCTATAACAAAAGTCTTATGAAAGTTGTTCAACTTCAACAAGTGTAACTTTAAAAGCTTACCATTCGGCAACAATTCCTTCATTTTCGCCTCATTGTGCACACTCGCGGTGTGCTGTTGGCAGAATGAATCCGATGATCTGGATTGCTTTTGATTAGCACACTGTAAAGTGCTTCTACATTTGATCTGCTGCGTTCTTGAGCAACTCACGAGCCCCTATCTCACGAAAACGATTAGAACCAGTCGGATACAAACACATCGAAATGTATCAGAATGAAACTAAAACTAAAGCGCAACAGAGCCCCGCAGACAAAATAGAAAACGTATTAGGATACGCGTGCGTCAAGCTAGTACAGTTTCTTAATCAACCGACCGGCAAAAACCAGAGCAAGGTAAATTATTGGTCATCATAATTGTTGTCATAATTAAAAGTATATATATACATATATATATATACATATATATATTTAGCAAAATATATACGAGGGAACCTGGTCC]

[+] EMBL BX614823             [AACTTGTAGCGGGATAATCGGTTAAAGAAGCCATTTTATTTTATTTTAAAGAAGATCTCATAAACAATCACGCCAACCATATGCTGCACAACCGCGGCACGAACTACTTATGTTTGGGAAACGAATGACCAAAAACCATTTGGAATCTGTCATTTAAATATAAATATATATACATACATGTGTCATTATCATCCTCACTGTGCAAAACTACACATCCTCATATAGCGTTACGAGGGACGAGTTGTTCAATGCGGCAAGCGAAACGCGAATAGAACTTTATTTTAGTCTAAGTAACAAATCACATCGACTTTGAAAATAGTATAAACATATTACAAGGTTGAGATTAGTGCGGAGAGGGTTTGAAGTGTTTCACAAAACAGCAAAAAAAACTCTGCGGACAGGTTTAGTTTCAAAAATTGTATGCAAAACGAGGCGGTGCATGTAATTCAATTAATGGACGATAATTCAGTGTTAAAAAATAGCAGAAAACAAACATTTGACGTATGTATGTGTATACG                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                     ]
[+] EMBL BX618695             [                                                                                                                                                                                                                                                                                                                                                             CGGAGAGGGTTTGAAGTGTTTCACAAAACAGCAAAAAAAACTCTGCGGACAGGTTTAGTTTCAAAAACTGTATGCAAAACGAGGCGGTGCATGTAATTCAATTAATGGACGATAATTCAGTGTTAAAAAATAGCAGAAAACAAACATTTGACGTATGTATGTGTATACGTTCATGTTCGAAAAAAGTATTTTTATCGTACGTTTCAAAAAACCAAATATGCATCTACATGTGCCTACTTTGCAGCTGCAGTGAAAGATAGAAGGAATTATTCATGTCCTAATATGTAGACGTTCCTCCATAGGCTTTAATCAACCGGTTAACATTGAACTCGTTCACTCTCCGCAAGGTGTAAAGCCGTGCAAAAGCATCGCTACTCCACGCATCTATGCCATGCTACGCTTTCAAAGCAGCGGCAAAGCATTATCTTTCTAGCTACACATTTTGTTCGCAATTGCAATGGAATGCAATTTGTGAGGTCACCGTACACTGCAATCAAGCGGACTCGTTTTTCTACATATCTTTTTCGCGCGACCACCACCACACCTCTTAGTATGAACCTATAACAAAAGTCTTATGAAAGTTGTTCAACTTCAACAAGTGTAACTTTAAAAGCTTACCATTCGGCAACAATTCCTTCATTTTCGCCTCATTGTGCACACTCGCGGTGTGCTGTTGGCAGAATGAATCCGATGATCT                                                                                                                                                                                                                                                                                                                                                                     ]
[+] EMBL BX608533             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                       AAAGCATCGCTACTCCACGCATCTATGCCATGCTACGCGTTCAAAGCAGCGGCAAAGCATTATCTTTCTAGCTACACATTTTGTTCGCAATTGCAATGGAATGCAATTTGTGAGGTCACCGTACACTGCAATCAAGCGGACTCGTTTTTCTACATATCTTTTTCGCGCGACCACCACCACACCTCTTAGTATGAACCTATAACAAAAGTCTTATGAAAGTTGTTCAACTTCAACAAGTGTAACTTTAAAAGCTTACCATTCGGCAACAATTCCTTCATTTTCGCCTCATTGTGCACACTCGCGGTGTGCTGTTGGCAGAATGAATCCGATGATCTGGATTGCTTTTGATTAGCACACTGTAAAGTGCTTCTACATTTGATCTGCTGCGTTCTTGAGCAACTCACGAGCCCCTATCTCACGAAAACGATTAGAACCAGTCGGATACAAACACATCGAAATGTATCAGAATGAAACTAAAACTAAAGCGCAACAGAGCCCCGCAGACAAAATAGAAAACGTATTAGGATACGCGTGCGTCAAGCTAGTACAGTTTCTTAATCAACCGACCGGCAAAAACCAGAGCAAGGTAAATTATTGGTCATCATAATTGTTGTCATAATTAAAAGTATATATATACATATATATATATACATATATATATTTAGCAAAATATATACGAGGGAACCTGGTCC]


>consensus_5234#0 AACTTGTAGCGGGATAATCGGTTAAAGAAGCCATTTTATTTTATTTTAAAGAAGATCTCA TAAACAATCACGCCAACCATATGCTGCACAACCGCGGCACGAACTACTTATGTTTGGGAA ACGAATGACCAAAAACCATTTGGAATCTGTCATTTAAATATAAATATATATACATACATG TGTCATTATCATCCTCACTGTGCAAAACTACACATCCTCATATAGCGTTACGAGGGACGA GTTGTTCAATGCGGCAAGCGAAACGCGAATAGAACTTTATTTTAGTCTAAGTAACAAATC ACATCGACTTTGAAAATAGTATAAACATATTACAAGGTTGAGATTAGTGCGGAGAGGGTT TGAAGTGTTTCACAAAACAGCAAAAAAAACTCTGCGGACAGGTTTAGTTTCAAAAATTGT ATGCAAAACGAGGCGGTGCATGTAATTCAATTAATGGACGATAATTCAGTGTTAAAAAAT AGCAGAAAACAAACATTTGACGTATGTATGTGTATACGTTCATGTTCGAAAAAAGTATTT TTATCGTACGTTTCAAAAAACCAAATATGCATCTACATGTGCCTACTTTGCAGCTGCAGT GAAAGATAGAAGGAATTATTCATGTCCTAATATGTAGACGTTCCTCCATAGGCTTTAATC AACCGGTTAACATTGAACTCGTTCACTCTCCGCAAGGTGTAAAGCCGTGCAAAAGCATCG CTACTCCACGCATCTATGCCATGCTACGCTTTCAAAGCAGCGGCAAAGCATTATCTTTCT AGCTACACATTTTGTTCGCAATTGCAATGGAATGCAATTTGTGAGGTCACCGTACACTGC AATCAAGCGGACTCGTTTTTCTACATATCTTTTTCGCGCGACCACCACCACACCTCTTAG TATGAACCTATAACAAAAGTCTTATGAAAGTTGTTCAACTTCAACAAGTGTAACTTTAAA AGCTTACCATTCGGCAACAATTCCTTCATTTTCGCCTCATTGTGCACACTCGCGGTGTGC TGTTGGCAGAATGAATCCGATGATCTGGATTGCTTTTGATTAGCACACTGTAAAGTGCTT CTACATTTGATCTGCTGCGTTCTTGAGCAACTCACGAGCCCCTATCTCACGAAAACGATT AGAACCAGTCGGATACAAACACATCGAAATGTATCAGAATGAAACTAAAACTAAAGCGCA ACAGAGCCCCGCAGACAAAATAGAAAACGTATTAGGATACGCGTGCGTCAAGCTAGTACA GTTTCTTAATCAACCGACCGGCAAAAACCAGAGCAAGGTAAATTATTGGTCATCATAATT GTTGTCATAATTAAAAGTATATATATACATATATATATATACATATATATATTTAGCAAA ATATATACGAGGGAACCTGGTCC



consensusID : consensus_5234#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 460
fasta sequence
                              [GTGATAAGTGGCAAAAAACNAGTCGTACCCGACTGGGTCATGTTTGAGAGCAAATTTGAGCTGTTGGTCACAAAAAGTCATACACACAGCGAAACACAAACAGCATTTTAAGCTCAGTTAGGTGGACGTATACATCTTAGGATGTGTTTTATTCGAACTTCTTTAAAAAAATAACTATCACATGTTATGGAAGCAGTATTACCAATGTACAGAAAGTTGTTCGTAGGATGCCCATCGTATCAAGTTCATTGAAGCTTTTCGTTTCATGTAATGTAAATTTAAAAAAAAAAATCTGTTGCTTTCAACGCTTTACTTTGTTTAGTTAGGAAAAAGANNAACCAGTAATTTATGTTGGAACTTGGTAGCGGGATAATCGGTTAAAGAAGCCATTTTATTTTAAAGAAGATCTCATAAACAATCACGCCAACCATATGCTGNCACAACCTCGCGGCNACGAACT]

[+] EMBL BX619661             [GTGATAAGTGGCAAAAAACNAGTCGTACCCGACTGGGTCATGTTTGAGAGCAAATTTGAGCTGTTGGTCACAAAAAGTCATACACACAGCGAAACACAAACAGCATTTTAAGCTCAGTTAGGTGGACGTATACATCTTAGGATGTGTTTTATTCGAACTTCTTTAAAAAAATAACTATCACATGTTATGGAAGCAGTATTACCAATGTACAGAAAGTTGTTCGTAGGATGCCCATCGTATCAAGTTCATTGAAGCTTTTCGTTTCATGTAATGTAAATTTAAAAAAAAAAATCTGTTGCTTTCAACGCTTTACTTTGTTTAGTTAGGAAAAAGANNAACCAGTAATTTATGTTGGAACTTGGTAGCGGGATAATCGGTTAAAGAAGCCATTTTATTTTAAAGAAGATCTCATAAACAATCACGCCAACCATATGCTGNCACAACCTCGCGGCNACGAACT]


>consensus_5234#1 GTGATAAGTGGCAAAAAACNAGTCGTACCCGACTGGGTCATGTTTGAGAGCAAATTTGAG CTGTTGGTCACAAAAAGTCATACACACAGCGAAACACAAACAGCATTTTAAGCTCAGTTA GGTGGACGTATACATCTTAGGATGTGTTTTATTCGAACTTCTTTAAAAAAATAACTATCA CATGTTATGGAAGCAGTATTACCAATGTACAGAAAGTTGTTCGTAGGATGCCCATCGTAT CAAGTTCATTGAAGCTTTTCGTTTCATGTAATGTAAATTTAAAAAAAAAAATCTGTTGCT TTCAACGCTTTACTTTGTTTAGTTAGGAAAAAGANNAACCAGTAATTTATGTTGGAACTT GGTAGCGGGATAATCGGTTAAAGAAGCCATTTTATTTTAAAGAAGATCTCATAAACAATC ACGCCAACCATATGCTGNCACAACCTCGCGGCNACGAACT



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_5234#0      AACTTGTAGCGGGATAATCGGTTAAAGAAGCCATTTTATTTTATTTTAAAGAAGATCTCA 60
consensus_5234#1      ------------------------------------------------------------
                                                                                  

consensus_5234#0      TAAACAATCACGCCAACCATATGCTGCACAACCGCGGCACGAACTACTTATGTTTGGGAA 120
consensus_5234#1      ------------------------------------------------------------
                                                                                  

consensus_5234#0      ACGAATGACCAAAAACCATTTGGAATCTGTCATTTAAATATAAATATATATACATACATG 180
consensus_5234#1      ------------------------------------------------------------
                                                                                  

consensus_5234#0      TGTCATTATCATCCTCACTGTGCAAAACTACACATCCTCATATAGCGTTACGAGGGACGA 240
consensus_5234#1      ------------------------------------------------------------
                                                                                  

consensus_5234#0      GTTGTTCAATGCGGCAAGCGAAACGCGAATAGAACTTTATTTTAGTCTAAGTAACAAATC 300
consensus_5234#1      ----------GTGATAAGTG----GCAAAAAACNAGTCGTACCCGACTGGGTCATGTTTG 46
                                * *  *** *    ** ** *     *  *    * **  ** *    * 

consensus_5234#0      ACATCGACTTTGAA--AATAGTATAAACATATTACAAGGTTGAGATTAGTGCGGAGAGGG 358
consensus_5234#1      AGAGCAAATTTGAGCTGTTGGTCACAAAAAGTCATACACAC-AGCGAAACACAAACAGCA 105
                      * * * * *****     * **   ** *  * * *      **   *   *  * **  

consensus_5234#0      TTTGAAGTGTTTCACAAAACAGCAAAAAAAACTCTGCGGACAGGTTTAGTTTCAAAAATT 418
consensus_5234#1      TTTTAAG---CTCAGTTAGGTGGACGTATACATCTTAGGATGTGTTTTATTC--GAACTT 160
                      *** ***    ***   *   * *   * *  ***  ***   ****  **    ** **

consensus_5234#0      GTATGCAAAACGAGGCGGTGCATGTAATTCAATTAATGGACGATAATTCAGTGTTAAAAA 478
consensus_5234#1      CTTTAAAAAAATAACTATCACATGTTAT---------GGAAG------CAGTATTACCAA 205
                       * *  ****  *       ***** **         *** *      **** ***  **

consensus_5234#0      ATAGCAGAAAACAAACATTTGACGTATGTATGT-GTAT-ACGTTCATGTTCGAAAAAAGT 536
consensus_5234#1      TGTACAGAAAGT---TGTTCGTAGGATGCCCATCGTATCAAGTTCA---TTGAAGCTTTT 259
                          ******       ** *  * ***    * **** * *****   * ***     *

consensus_5234#0      ATTTTTATCGTACGT---TTCAAAAAACCAAATATGCATCTACATGTGCCT-ACTTTGCA 592
consensus_5234#1      CGTTTCATGTAATGTAAATTTAAAAAAAAAAATCTGTTGCTTTCAACGCTTTACTTTGTT 319
                        *** **   * **   ** ******  **** **   **      ** * ******  

consensus_5234#0      GCTGCAGTGAAAGATAGAAGGAATTATTCATGTCCTAATATGTAGACGTTCCTCCATAGG 652
consensus_5234#1      TAGTTAGGAAAAAGANNAACCAGTAATTTATGTTGGAACTTGGTAGCGGGAT--AATCGG 377
                           **  ***     **  * * *** ****   **  **    **       ** **

consensus_5234#0      CTTTAATCAACCGGTTAACATTGAACTCGTTCACTCTCCGCAAGGTGTAAAGCCGTGCAA 712
consensus_5234#1      -TTAAAGAAGCCATTTTATTTTAAAGAAGATC-----TCATAAACAATCACGCCAACCAT 431
                       ** **  * **  ** *  ** **   * **      *  **    * * ***   ** 

consensus_5234#0      AAGC-ATCGCTACTCCACGCATCTATGCCATGCTACGCTTTCAAAGCAGCGGCAAAGCAT 771
consensus_5234#1      ATGCTGNCACAACCTCGCGGCNACGAACT------------------------------- 460
                      * **   * * **  * **        *                                

consensus_5234#0      TATCTTTCTAGCTACACATTTTGTTCGCAATTGCAATGGAATGCAATTTGTGAGGTCACC 831
consensus_5234#1      ------------------------------------------------------------
                                                                                  

consensus_5234#0      GTACACTGCAATCAAGCGGACTCGTTTTTCTACATATCTTTTTCGCGCGACCACCACCAC 891
consensus_5234#1      ------------------------------------------------------------
                                                                                  

consensus_5234#0      ACCTCTTAGTATGAACCTATAACAAAAGTCTTATGAAAGTTGTTCAACTTCAACAAGTGT 951
consensus_5234#1      ------------------------------------------------------------
                                                                                  

consensus_5234#0      AACTTTAAAAGCTTACCATTCGGCAACAATTCCTTCATTTTCGCCTCATTGTGCACACTC 1011
consensus_5234#1      ------------------------------------------------------------
                                                                                  

consensus_5234#0      GCGGTGTGCTGTTGGCAGAATGAATCCGATGATCTGGATTGCTTTTGATTAGCACACTGT 1071
consensus_5234#1      ------------------------------------------------------------
                                                                                  

consensus_5234#0      AAAGTGCTTCTACATTTGATCTGCTGCGTTCTTGAGCAACTCACGAGCCCCTATCTCACG 1131
consensus_5234#1      ------------------------------------------------------------
                                                                                  

consensus_5234#0      AAAACGATTAGAACCAGTCGGATACAAACACATCGAAATGTATCAGAATGAAACTAAAAC 1191
consensus_5234#1      ------------------------------------------------------------
                                                                                  

consensus_5234#0      TAAAGCGCAACAGAGCCCCGCAGACAAAATAGAAAACGTATTAGGATACGCGTGCGTCAA 1251
consensus_5234#1      ------------------------------------------------------------
                                                                                  

consensus_5234#0      GCTAGTACAGTTTCTTAATCAACCGACCGGCAAAAACCAGAGCAAGGTAAATTATTGGTC 1311
consensus_5234#1      ------------------------------------------------------------
                                                                                  

consensus_5234#0      ATCATAATTGTTGTCATAATTAAAAGTATATATATACATATATATATATACATATATATA 1371
consensus_5234#1      ------------------------------------------------------------
                                                                                  

consensus_5234#0      TTTAGCAAAATATATACGAGGGAACCTGGTCC 1403
consensus_5234#1      --------------------------------
                                                      




Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner    (hubert.wassner@noos.fr)