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Anopheles gambiae
cluster # 5235 cluster # 5235       Sequences # 4       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_5235#0 length = 620 sequences # 2  
consensus_5235#1 length = 518 sequences # 2  

consensusID : consensus_5235#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 620
fasta sequence
                              [ATCGCAGAGGTTAAGGCAGGCGGCGCCATGTTGGAGTTGCATGTTTGCTCAGAAATCGATTTTGAAGTGTGTCGTCCGGTCGTCGTACCGCCGCGTCAAAAAGAGATTGTGAAGTTTTAGCAAGTTTTGACAATTGAAGTCGCGCGCCGTCCTCGTCGCGCAGAGGGGACACGGTGACGCAGAGCCAAATTTGCAAGTGGCAAGCCGTTTTTCTTTATTATTTCTACGCGTGTGGTGG-CCCCTCCAAGAGAAAGGGCGCAGCGAGTGGTGGTGGCGCTGCAGGTTTTTGGGAAGCGAAATTTTTGTGCAGCGCGG-CCTGGTGCTGTCACGGTACAACCGCTGCTGGGCTGGCCCGGAACGTAG-CCCATCGG-CCCAACAG-CCTCTTGCTGGACGCGACGGAGGAAGGAAACGGTCGACAAACAGAGCACGGAAGGAGAGCGCAGCGCGTTTGTTCTGGGCGCGCAATTTGGCCGAACCCGA-ACACATGACGGATTGTGCGTTCCCGGCGTGTGTGCGTGTGTGTGCATTTCACTGGCCGGTGTCTCTGCTGCGTACAACCAAGACGACGGCGGACTGGTGTACACTGGTCGTGTGCAGAANGAACGAGCTACTAGCCGCCT]

[+] EMBL AL696286             [ATCGCAGAGGTTAAGGCAGGCGGCGCCATGTTGGAGTTGCATGTTTGCTCAGAAATCGATTTTGAAGTGTGTCGTCCGGTCGTCGTACCGCCGCGTCAAAAAGAGATTGTGAAGTTTTAGCAAGTTTTGACAATTGAAGTCGCGCGCCGTCCTCGTCGCGCAGAGGGGACACGGTGACGCAGAGCCAAATTTGCAAGTGGCAAGCCGTTTTTCTTTATTATTTCTACGCGTGTGGTGG CCCCTCCAAGAGAAAGGGCGCAGCGAGTGGTGGTGGCGCTGCAGGTTTTTGGGAAGCGAAATTTTTGTGCAGCGCGG CCTGGTGCTGTCACGGTACAACCGCTGCTGGGCTGGCCCGGAACGTAG CCCATCGG CCCAACAG CCTCTTGCTGGACGCGACGGAGGAAGGAAACGGTCGACAAACAGAGCACGGAAGGAGAGCGCAGCGCGTTTGTTCTGGGCGCGCAATTTGGCCGAACCCGA ACACATGACGGATTGTGCGTTCCCGGCGTGTGTGCGTGTGTGTGCATTTCACTGGCCGGTGTCTCTGCTGCGTACAACCAAGACGACGGCGGACTGGTGTACACTGGTCGTGTGCAGAANGAACGAGCTACTAGCCGCCT]
[+] EMBL BM628965             [                                    ccGCATGTTTGCTCAGAAATCGATTTTGAAGTGTGTC TCCGGTCGTCGTACCGCCGCGTCAAAAAGAGATTGTGAAGTTTTAGCAAGTTTTGACAATTGAAGTCGCGCGCCGTCCTCGTCGCGCAGAGGGGACACGGTGACGCAGAGCCAAATTTGCAAGTGGCAAGCCGTTTTTCTTTATTATTTCTACG GTGTGGTGGCCCCCTCCAAGAGAAAGGGCGCAGCGAGTGGTGGTGGCGCTGCAGGTTTTTGGGAAGCGAAATTTTTGTGCAGCGCGGCCCTGGTGCTGTCACGGTACAACCGCTGCTGGGCTGGCCCGGAACGTAGCCCCATCGGCCCCAACAGCCCTCTTGCTGGACGCGACGGAGGAAGGAAACGGTCGACAAACAGAGCACGGAAGGAGAGCGC GCGCGTTTGTTCTGGGCGCGCAATTTGGCCGACCCCGACACACATGACGGATTGTGCGTTCCCGGCGTGTGTGCGTGTGTGTGCATTTCACTGG CGGTGTCTCTGCTGC TACAA CAAGACGACGGCGGA TGGTGT CA TGGTCGTGTGCAG                       ]


>consensus_5235#0 ATCGCAGAGGTTAAGGCAGGCGGCGCCATGTTGGAGTTGCATGTTTGCTCAGAAATCGAT TTTGAAGTGTGTCGTCCGGTCGTCGTACCGCCGCGTCAAAAAGAGATTGTGAAGTTTTAG CAAGTTTTGACAATTGAAGTCGCGCGCCGTCCTCGTCGCGCAGAGGGGACACGGTGACGC AGAGCCAAATTTGCAAGTGGCAAGCCGTTTTTCTTTATTATTTCTACGCGTGTGGTGGCC CCTCCAAGAGAAAGGGCGCAGCGAGTGGTGGTGGCGCTGCAGGTTTTTGGGAAGCGAAAT TTTTGTGCAGCGCGGCCTGGTGCTGTCACGGTACAACCGCTGCTGGGCTGGCCCGGAACG TAGCCCATCGGCCCAACAGCCTCTTGCTGGACGCGACGGAGGAAGGAAACGGTCGACAAA CAGAGCACGGAAGGAGAGCGCAGCGCGTTTGTTCTGGGCGCGCAATTTGGCCGAACCCGA ACACATGACGGATTGTGCGTTCCCGGCGTGTGTGCGTGTGTGTGCATTTCACTGGCCGGT GTCTCTGCTGCGTACAACCAAGACGACGGCGGACTGGTGTACACTGGTCGTGTGCAGAAN GAACGAGCTACTAGCCGCCT



consensusID : consensus_5235#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 2
consensus length = 518
fasta sequence
                              [GGCAAGAATCCGGCACGANGGNANTTAGCAAGTTTTGACAATTGCCAAGTCGCGCGCCGTCCTCGTCGCGCAGAGGGGACACGGTGACGCAGAGCCAAATTTGCAAGTGGCAAGCCGTTTTTCTTTATTATTTCTACGGTGTGGTGGCCCCCTCCAAGAGAAAGGGCGCAGCGAGTGGTGGTGGCGCTGCAGGTTTTTGGGAAGCGAAATTTTTGTGCAGCGCGGCCTGGTGCTGTCACGGTACAACCGCTGCTGGGCTGGCCCGGAACGTAGCCCCATCGGGCCCAAGCAGNGCCTCTTGCTGGACGCGACGGAGGAAGGAAACGGTCGACGAAACAGAGCACGGAAGGAGAGCGCGCGCGTTTGTTCTGGGCGGCGCAAGTTTGGCCGAGNCCCGAGCAGACATGACGGATTGTGCGTTCCCGGCGTGTGTGCGTAGTGTGTGCATTTCACTGGCGGTGTCTCGTGCGTGNTACAACAAGACGACGGCCGGATGGTGTCATGGGTCGTGTGCAGAA]

[+] EMBL BX468157             [GGCAAGAATCCGGCACGANGGNANTTAGCAAGTTTTGACAATTGCCAAGTCGCGCGCCGTCCTCGTCGCGCAGAGGGGACACGGTGACGCAGAGCCAAATTTGCAAGTGGCAAGCCGTTTTTCTTTATTATTTCTACGGTGTGGTGGCCCCCTCCAAGAGAAAGGGCGCAGCGAGTGGTGGTGGCGCTGCAGGTTTTTGGGAAGCGAAATTTTTGTGCAGCGCGGCCTGGTGCTGTCACGGTACAACCGCTGCTGGGCTGGCCCGGAACGTAGCCCCATCGGGCCCAAGCAGNGCCTCTTGCTGGACGCGACGGAGGAAGGAAACGGTCGACGAAACAGAGCACGGAAGGAGAGCGCGCGCGTTTGTTCTGGGCGGCGCAAGTTTGGCCGAGNCCCGAGCAGACATGACGGATTGTGCGTTCCCGGCGTGTGTGCGTAGTGTGTGCATTTCACTGGCGGTGTCTCGTGCGTGNTACAACAAGACGACGGCCGGATGGTGTCATGGGTCGTGTGCAGAA]
[+] EMBL BM589927             [                                                             ccgGTCGCGCAGAGGGGACACGGTGACGCAGAGCCAAATTTGCAAGTGGCAAGCCGTTTTTCTTTATTATTTCTACGGTGTGGTGGCCCCC                                                                                                                                                                                                                                                                                                                                                                              ]


>consensus_5235#1 GGCAAGAATCCGGCACGANGGNANTTAGCAAGTTTTGACAATTGCCAAGTCGCGCGCCGT CCTCGTCGCGCAGAGGGGACACGGTGACGCAGAGCCAAATTTGCAAGTGGCAAGCCGTTT TTCTTTATTATTTCTACGGTGTGGTGGCCCCCTCCAAGAGAAAGGGCGCAGCGAGTGGTG GTGGCGCTGCAGGTTTTTGGGAAGCGAAATTTTTGTGCAGCGCGGCCTGGTGCTGTCACG GTACAACCGCTGCTGGGCTGGCCCGGAACGTAGCCCCATCGGGCCCAAGCAGNGCCTCTT GCTGGACGCGACGGAGGAAGGAAACGGTCGACGAAACAGAGCACGGAAGGAGAGCGCGCG CGTTTGTTCTGGGCGGCGCAAGTTTGGCCGAGNCCCGAGCAGACATGACGGATTGTGCGT TCCCGGCGTGTGTGCGTAGTGTGTGCATTTCACTGGCGGTGTCTCGTGCGTGNTACAACA AGACGACGGCCGGATGGTGTCATGGGTCGTGTGCAGAA



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_5235#0      ATCGCAGAGGTTAAGGCAGGCGGCGCCATGTTGGAGTTGCATGTTTGCTCAGAAATCGAT 60
consensus_5235#1      ------------------------------------------------------------
                                                                                  

consensus_5235#0      TTTGAAGTGTGTCGTCCGGTCGTCGTACCGCCGCGTCAAAAAGAGATTGTGAAGTT--TT 118
consensus_5235#1      ----------------------------------GGCAAGAATCCGGCACGANGGNANTT 26
                                                        * *** **        ** *    **

consensus_5235#0      AGCAAGTTTTGACAATTG--AAGTCGCGCGCCGTCCTCGTCGCGCAGAGGGGACACGGTG 176
consensus_5235#1      AGCAAGTTTTGACAATTGCCAAGTCGCGCGCCGTCCTCGTCGCGCAGAGGGGACACGGTG 86
                      ******************  ****************************************

consensus_5235#0      ACGCAGAGCCAAATTTGCAAGTGGCAAGCCGTTTTTCTTTATTATTTCTACGCGTGTGGT 236
consensus_5235#1      ACGCAGAGCCAAATTTGCAAGTGGCAAGCCGTTTTTCTTTATTATTTCTACG-GTGTGGT 145
                      **************************************************** *******

consensus_5235#0      GGCCCC-TCCAAGAGAAAGGGCGCAGCGAGTGGTGGTGGCGCTGCAGGTTTTTGGGAAGC 295
consensus_5235#1      GGCCCCCTCCAAGAGAAAGGGCGCAGCGAGTGGTGGTGGCGCTGCAGGTTTTTGGGAAGC 205
                      ****** *****************************************************

consensus_5235#0      GAAATTTTTGTGCAGCGCGGCCTGGTGCTGTCACGGTACAACCGCTGCTGGGCTGGCCCG 355
consensus_5235#1      GAAATTTTTGTGCAGCGCGGCCTGGTGCTGTCACGGTACAACCGCTGCTGGGCTGGCCCG 265
                      ************************************************************

consensus_5235#0      GAACGTAGCCC-ATCGG-CCCAAC---AGCCTCTTGCTGGACGCGACGGAGGAAGGAAAC 410
consensus_5235#1      GAACGTAGCCCCATCGGGCCCAAGCAGNGCCTCTTGCTGGACGCGACGGAGGAAGGAAAC 325
                      *********** ***** *****     ********************************

consensus_5235#0      GGTCGAC-AAACAGAGCACGGAAGGAGAGCGCAGCGCGTTTGTTCTGGGCG-CGCAA-TT 467
consensus_5235#1      GGTCGACGAAACAGAGCACGGAAGGAGAGCGC-GCGCGTTTGTTCTGGGCGGCGCAAGTT 384
                      ******* ************************ ****************** ***** **

consensus_5235#0      TGGCCGA-ACCCGAACA--CATGACGGATTGTGCGTTCCCGGCGTGTGTGCGT-GTGTGT 523
consensus_5235#1      TGGCCGAGNCCCGAGCAGACATGACGGATTGTGCGTTCCCGGCGTGTGTGCGTAGTGTGT 444
                      *******  ***** **  ********************************** ******

consensus_5235#0      GCATTTCACTGGCCGGTGTCTC-TGCTGCGTACAACCAAGACGACGGCGGACTGGTGTAC 582
consensus_5235#1      GCATTTCACTGGC-GGTGTCTCGTGCGTGNTACAAC-AAGACGACGGCCGGATGGTGT-C 501
                      ************* ******** ***    ****** *********** *  ****** *

consensus_5235#0      ACTGGTCGTGTGCAGAANGAACGAGCTACTAGCCGCCT 620
consensus_5235#1      ATGGGTCGTGTGCAGAA--------------------- 518
                      *  **************                     




Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner    (hubert.wassner@noos.fr)