These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5235#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 620 fasta sequence [ATCGCAGAGGTTAAGGCAGGCGGCGCCATGTTGGAGTTGCATGTTTGCTCAGAAATCGATTTTGAAGTGTGTCGTCCGGTCGTCGTACCGCCGCGTCAAAAAGAGATTGTGAAGTTTTAGCAAGTTTTGACAATTGAAGTCGCGCGCCGTCCTCGTCGCGCAGAGGGGACACGGTGACGCAGAGCCAAATTTGCAAGTGGCAAGCCGTTTTTCTTTATTATTTCTACGCGTGTGGTGG-CCCCTCCAAGAGAAAGGGCGCAGCGAGTGGTGGTGGCGCTGCAGGTTTTTGGGAAGCGAAATTTTTGTGCAGCGCGG-CCTGGTGCTGTCACGGTACAACCGCTGCTGGGCTGGCCCGGAACGTAG-CCCATCGG-CCCAACAG-CCTCTTGCTGGACGCGACGGAGGAAGGAAACGGTCGACAAACAGAGCACGGAAGGAGAGCGCAGCGCGTTTGTTCTGGGCGCGCAATTTGGCCGAACCCGA-ACACATGACGGATTGTGCGTTCCCGGCGTGTGTGCGTGTGTGTGCATTTCACTGGCCGGTGTCTCTGCTGCGTACAACCAAGACGACGGCGGACTGGTGTACACTGGTCGTGTGCAGAANGAACGAGCTACTAGCCGCCT] [+] EMBL AL696286 [ATCGCAGAGGTTAAGGCAGGCGGCGCCATGTTGGAGTTGCATGTTTGCTCAGAAATCGATTTTGAAGTGTGTCGTCCGGTCGTCGTACCGCCGCGTCAAAAAGAGATTGTGAAGTTTTAGCAAGTTTTGACAATTGAAGTCGCGCGCCGTCCTCGTCGCGCAGAGGGGACACGGTGACGCAGAGCCAAATTTGCAAGTGGCAAGCCGTTTTTCTTTATTATTTCTACGCGTGTGGTGG CCCCTCCAAGAGAAAGGGCGCAGCGAGTGGTGGTGGCGCTGCAGGTTTTTGGGAAGCGAAATTTTTGTGCAGCGCGG CCTGGTGCTGTCACGGTACAACCGCTGCTGGGCTGGCCCGGAACGTAG CCCATCGG CCCAACAG CCTCTTGCTGGACGCGACGGAGGAAGGAAACGGTCGACAAACAGAGCACGGAAGGAGAGCGCAGCGCGTTTGTTCTGGGCGCGCAATTTGGCCGAACCCGA ACACATGACGGATTGTGCGTTCCCGGCGTGTGTGCGTGTGTGTGCATTTCACTGGCCGGTGTCTCTGCTGCGTACAACCAAGACGACGGCGGACTGGTGTACACTGGTCGTGTGCAGAANGAACGAGCTACTAGCCGCCT] [+] EMBL BM628965 [ ccGCATGTTTGCTCAGAAATCGATTTTGAAGTGTGTC TCCGGTCGTCGTACCGCCGCGTCAAAAAGAGATTGTGAAGTTTTAGCAAGTTTTGACAATTGAAGTCGCGCGCCGTCCTCGTCGCGCAGAGGGGACACGGTGACGCAGAGCCAAATTTGCAAGTGGCAAGCCGTTTTTCTTTATTATTTCTACG GTGTGGTGGCCCCCTCCAAGAGAAAGGGCGCAGCGAGTGGTGGTGGCGCTGCAGGTTTTTGGGAAGCGAAATTTTTGTGCAGCGCGGCCCTGGTGCTGTCACGGTACAACCGCTGCTGGGCTGGCCCGGAACGTAGCCCCATCGGCCCCAACAGCCCTCTTGCTGGACGCGACGGAGGAAGGAAACGGTCGACAAACAGAGCACGGAAGGAGAGCGC GCGCGTTTGTTCTGGGCGCGCAATTTGGCCGACCCCGACACACATGACGGATTGTGCGTTCCCGGCGTGTGTGCGTGTGTGTGCATTTCACTGG CGGTGTCTCTGCTGC TACAA CAAGACGACGGCGGA TGGTGT CA TGGTCGTGTGCAG ] consensusID : consensus_5235#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 518 fasta sequence [GGCAAGAATCCGGCACGANGGNANTTAGCAAGTTTTGACAATTGCCAAGTCGCGCGCCGTCCTCGTCGCGCAGAGGGGACACGGTGACGCAGAGCCAAATTTGCAAGTGGCAAGCCGTTTTTCTTTATTATTTCTACGGTGTGGTGGCCCCCTCCAAGAGAAAGGGCGCAGCGAGTGGTGGTGGCGCTGCAGGTTTTTGGGAAGCGAAATTTTTGTGCAGCGCGGCCTGGTGCTGTCACGGTACAACCGCTGCTGGGCTGGCCCGGAACGTAGCCCCATCGGGCCCAAGCAGNGCCTCTTGCTGGACGCGACGGAGGAAGGAAACGGTCGACGAAACAGAGCACGGAAGGAGAGCGCGCGCGTTTGTTCTGGGCGGCGCAAGTTTGGCCGAGNCCCGAGCAGACATGACGGATTGTGCGTTCCCGGCGTGTGTGCGTAGTGTGTGCATTTCACTGGCGGTGTCTCGTGCGTGNTACAACAAGACGACGGCCGGATGGTGTCATGGGTCGTGTGCAGAA] [+] EMBL BX468157 [GGCAAGAATCCGGCACGANGGNANTTAGCAAGTTTTGACAATTGCCAAGTCGCGCGCCGTCCTCGTCGCGCAGAGGGGACACGGTGACGCAGAGCCAAATTTGCAAGTGGCAAGCCGTTTTTCTTTATTATTTCTACGGTGTGGTGGCCCCCTCCAAGAGAAAGGGCGCAGCGAGTGGTGGTGGCGCTGCAGGTTTTTGGGAAGCGAAATTTTTGTGCAGCGCGGCCTGGTGCTGTCACGGTACAACCGCTGCTGGGCTGGCCCGGAACGTAGCCCCATCGGGCCCAAGCAGNGCCTCTTGCTGGACGCGACGGAGGAAGGAAACGGTCGACGAAACAGAGCACGGAAGGAGAGCGCGCGCGTTTGTTCTGGGCGGCGCAAGTTTGGCCGAGNCCCGAGCAGACATGACGGATTGTGCGTTCCCGGCGTGTGTGCGTAGTGTGTGCATTTCACTGGCGGTGTCTCGTGCGTGNTACAACAAGACGACGGCCGGATGGTGTCATGGGTCGTGTGCAGAA] [+] EMBL BM589927 [ ccgGTCGCGCAGAGGGGACACGGTGACGCAGAGCCAAATTTGCAAGTGGCAAGCCGTTTTTCTTTATTATTTCTACGGTGTGGTGGCCCCC ] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_5235#0 ATCGCAGAGGTTAAGGCAGGCGGCGCCATGTTGGAGTTGCATGTTTGCTCAGAAATCGAT 60 consensus_5235#1 ------------------------------------------------------------ consensus_5235#0 TTTGAAGTGTGTCGTCCGGTCGTCGTACCGCCGCGTCAAAAAGAGATTGTGAAGTT--TT 118 consensus_5235#1 ----------------------------------GGCAAGAATCCGGCACGANGGNANTT 26 * *** ** ** * ** consensus_5235#0 AGCAAGTTTTGACAATTG--AAGTCGCGCGCCGTCCTCGTCGCGCAGAGGGGACACGGTG 176 consensus_5235#1 AGCAAGTTTTGACAATTGCCAAGTCGCGCGCCGTCCTCGTCGCGCAGAGGGGACACGGTG 86 ****************** **************************************** consensus_5235#0 ACGCAGAGCCAAATTTGCAAGTGGCAAGCCGTTTTTCTTTATTATTTCTACGCGTGTGGT 236 consensus_5235#1 ACGCAGAGCCAAATTTGCAAGTGGCAAGCCGTTTTTCTTTATTATTTCTACG-GTGTGGT 145 **************************************************** ******* consensus_5235#0 GGCCCC-TCCAAGAGAAAGGGCGCAGCGAGTGGTGGTGGCGCTGCAGGTTTTTGGGAAGC 295 consensus_5235#1 GGCCCCCTCCAAGAGAAAGGGCGCAGCGAGTGGTGGTGGCGCTGCAGGTTTTTGGGAAGC 205 ****** ***************************************************** consensus_5235#0 GAAATTTTTGTGCAGCGCGGCCTGGTGCTGTCACGGTACAACCGCTGCTGGGCTGGCCCG 355 consensus_5235#1 GAAATTTTTGTGCAGCGCGGCCTGGTGCTGTCACGGTACAACCGCTGCTGGGCTGGCCCG 265 ************************************************************ consensus_5235#0 GAACGTAGCCC-ATCGG-CCCAAC---AGCCTCTTGCTGGACGCGACGGAGGAAGGAAAC 410 consensus_5235#1 GAACGTAGCCCCATCGGGCCCAAGCAGNGCCTCTTGCTGGACGCGACGGAGGAAGGAAAC 325 *********** ***** ***** ******************************** consensus_5235#0 GGTCGAC-AAACAGAGCACGGAAGGAGAGCGCAGCGCGTTTGTTCTGGGCG-CGCAA-TT 467 consensus_5235#1 GGTCGACGAAACAGAGCACGGAAGGAGAGCGC-GCGCGTTTGTTCTGGGCGGCGCAAGTT 384 ******* ************************ ****************** ***** ** consensus_5235#0 TGGCCGA-ACCCGAACA--CATGACGGATTGTGCGTTCCCGGCGTGTGTGCGT-GTGTGT 523 consensus_5235#1 TGGCCGAGNCCCGAGCAGACATGACGGATTGTGCGTTCCCGGCGTGTGTGCGTAGTGTGT 444 ******* ***** ** ********************************** ****** consensus_5235#0 GCATTTCACTGGCCGGTGTCTC-TGCTGCGTACAACCAAGACGACGGCGGACTGGTGTAC 582 consensus_5235#1 GCATTTCACTGGC-GGTGTCTCGTGCGTGNTACAAC-AAGACGACGGCCGGATGGTGT-C 501 ************* ******** *** ****** *********** * ****** * consensus_5235#0 ACTGGTCGTGTGCAGAANGAACGAGCTACTAGCCGCCT 620 consensus_5235#1 ATGGGTCGTGTGCAGAA--------------------- 518 * ************** |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||