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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5236#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1071 fasta sequence
[CCGCCACTTTCGGCCAATACGCCCGAAATCGAGACACTGTTTGATACGATCACGTACAGCAAGGCGGGCTGCATTCTGAGGATGATTAACTGTTCCATCGGGGAGGAAGCGTTTCAAGCGGGCGTCCAGAACTATCTCGAACAGCACCGGAATGGTATCGTAACGCCGGAAGATCTGTACGCGAGTTTCTTCGTGCAGCAGCGGAAGGACGAACCGACGGTCGAGCAAATGTTCCGCAGCTGGGTAGACAAACCAGGCTATCCGGTGGTGACGGTTGAGCGTCTGAACGGCTCTTTCGTGCGGTTTCGGCAGCAGCGTTACCACAACCAGGAAGTGACCACCCAGGATATTACCTCGCGATGGTTCATACCGATCACGTACTACACCAACAGCAGCCTGGGGCAGTATGAGTATCAGCCTGCGTTTTGGATGAAAGAAACCGACCAGGAGCTGGTGCTCCAACTGGAAATGAACACGCAGGATGTTCTGGTGGTGAATCCGCGCCAGATCGGGTTCTACCGGGTGGAGTACGACGAGCGAGGTTGGAGCAGTATCGTGGACAACCTTACCACCCTACCGTCCATCATGCAGGCAAAGCTGATCGATGACGCGTTCGTGCTGGCACGGGCCGGTCTCGTCGGGTACGAGCTCTGTTTGGAAATGCTGCAGGAGCTCGCCACAAGCCCCGACCCGGTACCCTGGTTGATTGCGATGGCGGAAGAGAACATTGGCTACCTGCAGCGGGTCCTGCAGTCGGCAGAGTTTGATCGCTTTTTGACAGGATTTGTGGGCGAAATGTTTGATCTTGCCGGGAACGTGGGTCGCACGTTGCTCCAATCCCAAGCGCTGGACGTNGCCTACGATTGGTGGTCTCGCTTACGCAGCGAGCTTTATCGAGAGCAAACGTGAATCCAGCATCCGTCNCACGTGCCTGCCTGCCAACGCCCGTGCAGGANGTAGTGCAGGCATTGGTTTCGCCCGACGATCATGTACGGGAGCGTCTTTTCGCCCGATTAAAGTGTTTGCCGAAACAGTCGAACGAACCTGTGTCTGTGTTGCTGCTAGCATTGG]
[+] EMBL BM646415 [CCGCCACTTTCGGCCAATACGCCCGAAATCGAGACACTGTTTGATACGATCACGTACAGCAAGGCGGGCTGCATTCTGAGGATGATTAACTGTTCCATCGGGGAGGAAGCGTTTCAAGCGGGCGTCCAGAACTATCTCGAACAGCACCGGAATGGTATCGTAACGCCGGAAGATCTGTACGCGAGTTTCTTCGTGCAGCAGCGGAAGGACGAACCGACGGTCGAGCAAATGTTCCGCAGCTGGGTAGACAAACCAGGCTATCCGGTGGTGACGGTTGAGCGTCTGAACGGCTCTTTCGTGCGGTTTCGGCAGCAGCGTTACCACAACCAGGAAGTGACCACCCAGGATATTACCTCGCGATGGTTCATACCGATCACGTACTACACCAACAGCAGCCTGGGGCAGTATGAGTATCAGCCTGCGTTTTGGATGAAAGAAACCGACCAGGAGCTGGTGCTCCAACTGGAAATGAACACGCAGGATGTTCTGGTGGTGAATCCGCGCCAGATCGGGTTCTACCGGGTGGAGTACGACGAGCGAGGTTGGAGCAGTATCGTGGACAACCTTACCACCCTACCGTCCATCATGCAGGCAAAGCTGATCGATGACGCGTTCGTGCTGGCACGGGCCGGTCTCGTCGGGTACGAGCTCTGTTTGGAAATGCTGCAGGAGCTCGCCACAAGCCCCGACCCGGTACCCTGGTTGATTGCG ]
[+] EMBL BX619734 [ GTTCTACCGGGTGGAGTACGACGAGCGAGGTTGGAGCAGTATCGTGGACAACCTTACCACCCTACCGTCCATCATGCAGGCAAAGCTGATCGATGACGCGTTCGTGCTGGCACGGGCCGGTCTCGTCGGGTACGAGCTCTGTTTGGAAATGCTGCAGGAGCTCGCCACAAGCCCCGACCCGGTACCCTGGTTGATTGCGATGGCGGAAGAGAACATTGGCTACCTGCAGCGGGTCCTGCAGTCGGCAGAGTTTGATCGCTTTTTGACAGGATTTGTGGGCGAAATGTTTGATCTTGCCGGGAACGTGGGTCGCACGTTGCTCCAATCCCAAGCGCTGGACGTNGCCTACGATTGGTGGTCTCGCTTACGCAGCGAGCTTTATCGAGAGCAAACGTGAATCCAGCATCCGTCNCACGTGCCTGCCTGCCAACGCCCGTGCAGGANGTAGTGCAGGCATTGGTTTCGCCCGACGATCATGTACGG ]
[+] EMBL BM619556 [ ccgTGCAGGCAAAGCTGATCGATGACGCGTTCGTGCTGGCACGGGCCGGTCTCGTCGGGTACGAGCTCTGTTTGGAAATGCTGCAGGAGCTCGCCACAAGCCCCGACCCGGTACCCTGGTTGATTGCGATGGCGGAAGAGAACATTGGCTACCTGCAGCGGGTCCTGCAGTCGGCAGAGTTTGATCGCTTTTTGACAGGATTTGTGGGCGAAATGTTTGATCTTGCCGGGAACGTGGGTCGCACGTTGCTCCAATCCCAAGCGCTGGACGTGGCCTACGATTGGTGGTCTCGCTTA GCAGCGAGCTTTATCGAGAGCAAACGTGAATCCAGCATTCGTC CACGTGCCTGCCTGCCAACGCCCGTGCAGGAGGTAGTGCAGGCATTGGTTTCGCCCGACGATCATGTACGGGAGCGTCTTTTCGCCCGATTAAAGTGTTTGCCGAAACAGTCGAACGAACCTGTGTCTGTGTTGCTGCTAGCATTGG]
consensusID : consensus_5236#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 767 fasta sequence
[CCCTCAGCCAGCAACTCCCCGCAGGTTACAGCACCGGAATNGTATCTGTNCCGCCGGAAGATCTGTACGCGAGTTTCTTCGTGCAGCAGCGGAAGTGACACACCGACGGTCGAGCAAATGTTCCGCAGCTGGGTAGACAAACCAGGCTATCCGGTGGTGACGGTTGAGCTGTCTTGAACGGGTCTTTCTGTGCGGTATTCTGGCAGCCAGCGTTTACCACAANCCAGGAAAGTTGACCACCCAGGATATTACCTCGCGATGGTTCATACCGATCACGTACTAAACGCAAANAAGACAGACCTAGAGGCAGTCNTGAGGTTATTCAAGACCCTTGAACGATAATATGGGGACATTGACAAAGGANCAACCCTGACACCANGAGAAAGACCTAGTGNTTGCATCCCAAAACTGTGACAAAATTGNANACCACACTGCCACAGGGACAATTGCTTTCCCTTGAGATTGGGGTGAACTTCCACAGGAGCCCCACAGAATTCCGGCGTNATCATAACTCCGGCGGGCTTCGNGAAGGGTTTACCGGAACCCGGAAGGCCCCGACGATGGTTTGGGGAATAGCNGCNACNNTTANATTTCTCGCTTGGGGAAACNAAAACACCCATTTTTAANCACAACCCCCTTAACCCGGTCGTTTAATTCCAATTGNCCCAGGGCNNACAAGCTTTGGAATNNCAGGANTACGGACCCGAGCGGGTTACCCGATTNGCCATTCGGGCACAACACAGTGAGCCCCGCGATCCTTCCGCGTA]
[+] EMBL AL696386 [CCCTCAGCCAGCAACTCCCCGCAGGTTACAGCACCGGAATNGTATCTGTNCCGCCGGAAGATCTGTACGCGAGTTTCTTCGTGCAGCAGCGGAAGTGACACACCGACGGTCGAGCAAATGTTCCGCAGCTGGGTAGACAAACCAGGCTATCCGGTGGTGACGGTTGAGCTGTCTTGAACGGGTCTTTCTGTGCGGTATTCTGGCAGCCAGCGTTTACCACAANCCAGGAAAGTTGACCACCCAGGATATTACCTCGCGATGGTTCATACCGATCACGTACTAAACGCAAANAAGACAGACCTAGAGGCAGTCNTGAGGTTATTCAAGACCCTTGAACGATAATATGGGGACATTGACAAAGGANCAACCCTGACACCANGAGAAAGACCTAGTGNTTGCATCCCAAAACTGTGACAAAATTGNANACCACACTGCCACAGGGACAATTGCTTTCCCTTGAGATTGGGGTGAACTTCCACAGGAGCCCCACAGAATTCCGGCGTNATCATAACTCCGGCGGGCTTCGNGAAGGGTTTACCGGAACCCGGAAGGCCCCGACGATGGTTTGGGGAATAGCNGCNACNNTTANATTTCTCGCTTGGGGAAACNAAAACACCCATTTTTAANCACAACCCCCTTAACCCGGTCGTTTAATTCCAATTGNCCCAGGGCNNACAAGCTTTGGAATNNCAGGANTACGGACCCGAGCGGGTTACCCGATTNGCCATTCGGGCACAACACAGTGAGCCCCGCGATCCTTCCGCGTA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_5236#0 CCGCCACTTTCGGCCAATACGCCCGAAATCGAGACACTGTTTGATACGATCACGTACAGC 60
consensus_5236#1 ------------------------------------------------------------
consensus_5236#0 AAGGCGGGCTGCATTCTGAGGATGATTAACTGTTCCATCGGGGAGGAAGCGTTTCAAGCG 120
consensus_5236#1 --------------------------------------------------CCCTCAGCCA 10
*** *
consensus_5236#0 GGCGTCCAGAACTATCTCGAACAGCACCGGAATGGTATC-GTAACGCCGGAAGATCTGTA 179
consensus_5236#1 GCAACTCCCCGCAGGTT---ACAGCACCGGAATNGTATCTGTNCCGCCGGAAGATCTGTA 67
* * * * ************* ***** ** ****************
consensus_5236#0 CGCGAGTTTCTTCGTGCAGCAGCGGAAG-GACGAACCGACGGTCGAGCAAATGTTCCGCA 238
consensus_5236#1 CGCGAGTTTCTTCGTGCAGCAGCGGAAGTGACACACCGACGGTCGAGCAAATGTTCCGCA 127
**************************** *** **************************
consensus_5236#0 GCTGGGTAGACAAACCAGGCTATCCGGTGGTGACGGTTGAGC-GTCT-GAACGGCTCTTT 296
consensus_5236#1 GCTGGGTAGACAAACCAGGCTATCCGGTGGTGACGGTTGAGCTGTCTTGAACGGGTCTTT 187
****************************************** **** ****** *****
consensus_5236#0 C-GTGCGGT--TTCGGCAGC-AGCGTT-ACCACAACC-AGGAAG--TGACCACCCAGGAT 348
consensus_5236#1 CTGTGCGGTATTCTGGCAGCCAGCGTTTACCACAANCCAGGAAAGTTGACCACCCAGGAT 247
* ******* * ****** ****** ******* * ***** **************
consensus_5236#0 ATTACCTCGCGATGGTTCATACCGATCACGTACTACACCAACAGCAGCCTGGGGCAGTAT 408
consensus_5236#1 ATTACCTCGCGATGGTTCATACCGATCACGTACTAAACGCAAANAAGACAGACCTAGAGG 307
*********************************** ** * * ** * * **
consensus_5236#0 GAGTATCAGCCTGCGTTTTGGATGAAAGAAACCGACCAGGAGCTGGTGCTCCAACTGGAA 468
consensus_5236#1 CAGTCNTGAGGT-TATTCAAGACCCTTGAA--CGATAATATG--GGGACATTGAC---AA 359
*** * ** ** *** *** * * ** * ** **
consensus_5236#0 ATGAACACGCAGGATGTTCTGGTGGTGAATCCGCGCCAGATCGGGTTCTACCGGGTGGAG 528
consensus_5236#1 AGGANCAACCCTGACACCANGAGAAAGACCTAGTGN----TTGCATCCCA------AAAC 409
* ** ** * ** * ** * * * * * * * *
consensus_5236#0 TACGACGAGCGAGGTTGGAGCAGTATCGTGGACAACCTTACCACCCTACCGTCCATCATG 588
consensus_5236#1 TGTGACAAAATTGNANACCACACTGCCACAGGGACAATTGCTTTCCC-----TTGAGATT 464
* *** * * ** * * * * ** * ** **
consensus_5236#0 CAGGCAAAGCTGATCGATGACGCGTTCGTGCTGGCACGGGCCGGTCTCGTCGGGTACGAG 648
consensus_5236#1 GGGGTGAACTTCCACAGGAGCCCCACAGAATTCCGGCGTNATCATAACTCCGG---CGGG 521
** ** * * * * * * ** * * *** ** *
consensus_5236#0 CTCTGTTTGGAAATGCTGCAGGAGCTCGCCACAAGCCCCGACCCGGTACCCTGGTTGATT 708
consensus_5236#1 CTTCGN--GAAGGGTTTACCGGAACCCG--GAAGGCCCCGA--CGATGGTTTGGGGAATA 575
** * * * * * *** * ** * ******* ** * *** **
consensus_5236#0 GCGATGGCGGAAGAGAACATTGGCTACCTGCAGCGGGTCCTGCAGTCGGCAGAGTTTGAT 768
consensus_5236#1 GCNGCNACNNT----TANATTTCTCGCTTG----GGGAAACNAAAACACCCATTTTTAAN 627
** * * *** * ** *** * * * *** *
consensus_5236#0 CGCTTTTTGACAGGATTTGTGGGCGAAATGTTTGATCTTGCCGGGAACGTGGGTCGCACG 828
consensus_5236#1 C--------ACAACCCCCTTAACCCGGTCGTTTAATTCCAATTGNCCCAGGGCNNACAAG 679
* *** * * **** ** * * ** ** *
consensus_5236#0 TTGCTCCAATCCCAAGCGCTGGACGTNGCCTACGATTGGTGGTCTCGCTTACGCAGCGAG 888
consensus_5236#1 CT-TTGGAATNNCAGG-----ANTACGGACCCGAGCGGGTTACCCGATTNGCCATTCGGG 733
* * *** ** * * * *** * * * ** *
consensus_5236#0 CTTTATCGAGAGCAAACGTGAATCCAGCATCCGTCNCACGTGCCTGCCTGCCAACGCCCG 948
consensus_5236#1 C-------ACAACACA-GTGAGCCCCGCGATCCTTCCGCGTA------------------ 767
* * * ** * **** ** ** * * * ***
consensus_5236#0 TGCAGGANGTAGTGCAGGCATTGGTTTCGCCCGACGATCATGTACGGGAGCGTCTTTTCG 1008
consensus_5236#1 ------------------------------------------------------------
consensus_5236#0 CCCGATTAAAGTGTTTGCCGAAACAGTCGAACGAACCTGTGTCTGTGTTGCTGCTAGCAT 1068
consensus_5236#1 ------------------------------------------------------------
consensus_5236#0 TGG 1071
consensus_5236#1 ---
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||