These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5237#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1846 fasta sequence [GGTACCGGAAAAGCGGATCATTTTCCACTTCGTTCTAGTTCAGTATGGAATCGCTGGAAAAGCCAAATGCTGGGAAGGATGCCGAGAAGGATAAGGCTGTGACGAAGGCAAAGGGACGCCACCGGAGCAAGCACAAGTTCAACTCGATTCGCAAGCAGATAGAATTTTACTTCTCCGACGCTAACCTGACCAAAGACCGTTACATGGGACAGCTGCTGCGGAATGGGCCATTCATTCCACTGGAAGAGTTTTTAAAGTTCAACAAAATCAAAGCCCTCACTACGAACGTCGACGAGATAGCGAATGCGTTTGAAAAATTCCACCCTGCTGGAGCTTTCCGACGATCGGGCGAAGGTGCGCCGCAAGACGGAGGTTGTGGTGAAGGCCAACAGCGAGGAGTGTACGATCTACGTGGAAAGTTTGCCACCGAAAGCGGACCACGATTGGGTGCGGAATGTGTTTTCCAGCTACGGCACGGTGGCGTACGTATCGCTGCCCAAGTTTCGAAACTCGGGCAAAATCAAAGAGTTTGGCTTTGTGGAGTTCGACGAGGAGGCGAGTGTGCAGAAGGCACTGAAAGCGTTCCAAACGTTTGGCGGTGTGCTGGCGTACGATACGACGGACCCGGCCAAGATGGCAAGCATCAAGACGTACGAACCGGGAAAGGGAGCGCACAGCACGGTGAAGGCTCTGGCGAAACGAAAGCCGAACAGGGTGCTGACATGGAGAAGCCGAATGAATCATCCACCGGTTCGATGGCTGAAGACGATGGTAACAAGCGTGAGGAGGATGGCGATGAACCACCAGCGAAGAGACACAAAATCGATCCAACGAGTGACGAGGACGATGACACACAGGACGATCAGCAGTCGGATCGGGAAGCAAATGGGCAGAAGGTTGAGCCAGCAAGCGAAGAAGAGTTCCAGTCGGATCAGGAAGAGCCCGTCGGAGAGCATGATAACAAGGATGGGACGGACCAAGCAGAGGGTGATGGGCAGGATGTGAAACAAGACACTGGAAAGAAGAAATGCCGCCAAAGGAAGGGTTGCAGCATCATCAAGAAAGAGCTGCAGCTGGACGATAAGGTTTACGAGCTCAAAATAATGACCAAGAAAGAATGGCGCCGGCTGAGAAACAAGTATCTCAACCTGCAAAAGGAAGAGGCAAAAAAGTTGAAGCGCTTGTTCCACCAAACGGACAAGCATCATCATCATCATCATCATCATCAGCGGGGTGGCCATCCGAAGACGATTGCTTCCCATCCGAGCGGTGGAATTGCGATCAAATCGATTAAATCCTCCCCGAGGGTAAATTTCTACGGCGCCATGCCGGTTGAGGAGGACGAGGAGCACGGCGAGCAGGATGGTACCGGCAGCCACCTGCTTCAGCCGGAAGCGGCCGAGGAGAGTGCGGCCACGGCAAAGCGGCCGCTCTTCTCGTTCGAGCCCGGTCTGATCGTGAGCATAAAGTTTCGCGAACCGTGCGTCGATGTGAAGGATTTCCGGGCCGAGCTGAAGCAGTACCCGTACGTGAAGTATATTGACCTGAAGGAGGGCGACTTTGAGGCGTTTGTGCGCGTCGATACGCCCGCGTCGGCCGTGGCGCTCGTGAAGGAGTACTGCTCGGCGGAGCACAGCGCGCAGATACTGAGCGGCGAGCAGGAGCAGCAGTACTGGGACAAGATGATGCGCGACCGGGAGGACAAGCTGAACAAGCGCGTCAAGACGGAGCGCATTCGAGGGCGTACGAGGTTAATTCGTAAGATAAACAGTCACATTAAGTTTGATGATGACGATGAATAATGGCACAAAACGACCTTGATGGGATTATGGCGAAATAAAGTGAA] [+] EMBL CNS09J00 [GGTACCGGAAAAGCGGATCATTTTCCACTTCGTTCTAGTTCAGTATGGAATCGCTGGAAAAGCCAAATGCTGGGAAGGATGCCGAGAAGGATAAGGCTGTGACGAAGGCAAAGGGACGCCACCGGAGCAAGCACAAGTTCAACTCGATTCGCAAGCAGATAGAATTTTACTTCTCCGACGCTAACCTGACCAAAGACCGTTACATGGGACAGCTGCTGCGGAATGGGCCATTCATTCCACTGGAAGAGTTTTTAAAGTTCAACAAAATCAAAGCCCTCACTACGAACGTCGACGAGATAGCGAATGCGTTTGAAAAATTCCACCCTGCTGGAGCTTTCCGACGATCGGGCGAAGGTGCGCCGCAAGACGGAGGTTGTGGTGAAGGCCAACAGCGAGGAGTGTACGATCTACGTGGAAAGTTTGCCACCGAAAGCGGACCACGATTGGGTGCGGAATGTGTTTTCCAGCTACGGCACGGTGGCGTACGTATCGCTGCCCAAGTTTCGAAACTCGGGCAAAATCAAAGAGTTTGGCTTTGTGGAGTTCGACGAGGAGGCGAGTGTGCAGAAGGCACTGAAAGCGTTCCAAACGTTTGGCGGTGTGCTGGCGTACGATACGACGGACCCGGCCAAGATGGCAAGCATCAAGACGTACGAACCGGGAAAGGGAGCGCACAGCACGGTGAAGGCTCTGGCGAAACGAAAGCCGAACAGGGTGCTGACATGGAGAAGCCGAATGAATCATCCACCGGTTCGATGGCTGAAGACGATGGTAACAAGCGTGAGGAGGATGGCGATGAACCACCAGCGAAGAGACACAAAATCGATCCAACGAGTGACGAGGACGATGACACACAGGACGATCAGCAGTCGGATCGGGAAGCAAATGGGCAGAAGGTTGAGCCAGCAAGCGAAGAAGAGTTCCAGTCGGATCAGGAAGAGCCCGTCGGAGAGCATGATAACAAGGATGGGACGGACCAAGCAGAGGGTGATGGGCAGGATGTGAAACAAGACAC ] [-] EMBL CNS09J01 [ GATCAGCAGTCGGATCGGGAAGCAAATGGGCAGAAGGTTGAGCCAGCAAGCGAAGAAGAGTTCCAGTCGGATCAGGAAGAGCCCGTCGGAGAGCATGATAACAAGGATGGGACGGACCAAGCAGAGGGTGATGGGCAGGATGTGAAACAAGACACTGGAAAGAAGAAATGCCGCCAAAGGAAGGGTTGCAGCATCATCAAGAAAGAGCTGCAGCTGGACGATAAGGTTTACGAGCTCAAAATAATGACCAAGAAAGAATGGCGCCGGCTGAGAAACAAGTATCTCAACCTGCAAAAGGAAGAGGCAAAAAAGTTGAAGCGCTTGTTCCACCAAACGGACAAGCATCATCATCATCATCATCATCATCAGCGGGGTGGCCATCCGAAGACGATTGCTTCCCATCCGAGCGGTGGAATTGCGATCAAATCGATTAAATCCTCCCCGAGGGTAAATTTCTACGGCGCCATGCCGGTTGAGGAGGACGAGGAGCACGGCGAGCAGGATGGTACCGGCAGCCACCTGCTTCAGCCGGAAGCGGCCGAGGAGAGTGCGGCCACGGCAAAGCGGCCGCTCTTCTCGTTCGAGCCCGGTCTGATCGTGAGCATAAAGTTTCGCGAACCGTGCGTCGATGTGAAGGATTTCCGGGCCGAGCTGAAGCAGTACCCGTACGTGAAGTATATTGACCTGAAGGAGGGCGACTTTGAGGCGTTTGTGCGCGTCGATACGCCCGCGTCGGCCGTGGCGCTCGTGAAGGAGTACTGCTCGGCGGAGCACAGCGCGCAGATACTGAGCGGCGAGCAGGAGCAGCAGTACTGGGACAAGATGATGCGCGACCGGGAGGACAAGCTGAACAAGCGCGTCAAGACGGAGCGCATTCGAGGGCGTACGAGGTTAATTCGTAAGATAAACAGTCACATTAAGTTTGATGATGACGATGAATAATGGCACAAAACGACCTTGATGGGATTATGGCGA ] [+] EMBL BX623724 [ cTGAAGCGCTTGTTCCACCAGACGGACAAGCATC C TCATCATCATCATCAGCGGGGTGGCCATCCGAAGACGATTGCTTCCCATCCGAGCGGTGGAATTGCGATCAAATCGATCAAATCCTCCCCGAGGGTAAATTTCTACGGCGCCATGCCGGTTGAGGAGGACGAGGAGCACGGCGAGCAGGACGGAACCGGCAGCCACCTGCTTCAGCCGGAAGCGGCCGAGGAGAGTGCAGCCACGGCAAAGCGGCCGCTCTTTTCGTTCGAGCCCGGTCTGATCGTGAGCATAAAGTTTCGCGAACCGTGCGTCGATGTGAAGGATTTCCGGGCCGAGCTGAAGCAGTACCCGTACGTGAAGTATATTGACCTGAAGGAGGGCGACTTTGAGGCGTTTGTGCGCGTCGATACGCCTGCGTCGGCCGTGGCGCTCGTGAAGGAGTACTGCTCGGCGGAGCACAGCGCGCAGATACTGAGCGGCGAGCAGGAGCAGCAGTACTGGGACAAGATGATGCGCGACCGGGAGGACAAGCTGAACAAGCGCGTCAAGACGGAGCGCATTCGAGGGCGTACGAAGTTGATTCGTAAGATAAACAGTCACATTAAGTTTGATGATGACGATGAATAATGGCAC AAACGACCTTGGTGGAATTATGGCGAAATAAAGTGAA] consensusID : consensus_5237#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 862 fasta sequence [AAGAATTGCCTGAGGTTCGGCTGAGAAACAAGTATCTCCAACCTGCAAAAGGAATATGCAAAAAAGCTGAAGCGCTTGTTCCAGCAGACGGACAAGCATCCTCATCATCATCATCAGCGTGNTGTGTGCCATCCGAAGACGATTGCTTCCCATCCTGAGCTGGTGTGAATTGCGATCAAATCTGATCAAATCCTCCCCGAGTGGTAAATTTCTACGTGTGCCATGCCGGTTGAGTGAGTGACGAGTGAGCACTGNGTGAGCAGGACGGAACCGGATGGCACTGGTTCAGCCTGGAAGCTGTGCGAATGAGAGTTGCAGACCACAGGNGAAAGCGGCGCNTCTATTATACAGGTNACAGAGCCCGGGTCTGATCGTGAGCATTAACGTTCTCTGCGAACCGTGCGTCGATGTGAAGGATTTCGGGNCGCAGACTGAANCAAGTACACCCGTACAGATTAAGGTATATTGANCTTGAAACGAGNGGCCGAAATTATGAANGCGTAATGTGCAGCACTCTGCAATAANAGCCCTGGGGTACNGNACGAGTGGACCACCGTGAAACNGAGGTACCTGGTCCGGCAGGACACACAACANAGAGGCGGCCCAGAAAAATAACCATNTGNANNACCGAGGCGGGAAGCCANCAGGAAGANCACAAGCACAGACTAACATAGTGGGGAAACCACNANAGAAANTGACANTGACGGCCGGACACGGNGCGAGCAGACGGAACAANAGACGNCCTAAACCAAAGACGGACCGGTACNCAAAAGCACNAGGAGGCAAGACCGGCGCAATTACACTCAAAGAGTGNTGGATATACNNAANAANATATAGAATGTACGCNTGAACGACAATAAAA] [+] EMBL AL696402 [AAGAATTGCCTGAGGTTCGGCTGAGAAACAAGTATCTCCAACCTGCAAAAGGAATATGCAAAAAAGCTGAAGCGCTTGTTCCAGCAGACGGACAAGCATCCTCATCATCATCATCAGCGTGNTGTGTGCCATCCGAAGACGATTGCTTCCCATCCTGAGCTGGTGTGAATTGCGATCAAATCTGATCAAATCCTCCCCGAGTGGTAAATTTCTACGTGTGCCATGCCGGTTGAGTGAGTGACGAGTGAGCACTGNGTGAGCAGGACGGAACCGGATGGCACTGGTTCAGCCTGGAAGCTGTGCGAATGAGAGTTGCAGACCACAGGNGAAAGCGGCGCNTCTATTATACAGGTNACAGAGCCCGGGTCTGATCGTGAGCATTAACGTTCTCTGCGAACCGTGCGTCGATGTGAAGGATTTCGGGNCGCAGACTGAANCAAGTACACCCGTACAGATTAAGGTATATTGANCTTGAAACGAGNGGCCGAAATTATGAANGCGTAATGTGCAGCACTCTGCAATAANAGCCCTGGGGTACNGNACGAGTGGACCACCGTGAAACNGAGGTACCTGGTCCGGCAGGACACACAACANAGAGGCGGCCCAGAAAAATAACCATNTGNANNACCGAGGCGGGAAGCCANCAGGAAGANCACAAGCACAGACTAACATAGTGGGGAAACCACNANAGAAANTGACANTGACGGCCGGACACGGNGCGAGCAGACGGAACAANAGACGNCCTAAACCAAAGACGGACCGGTACNCAAAAGCACNAGGAGGCAAGACCGGCGCAATTACACTCAAAGAGTGNTGGATATACNNAANAANATATAGAATGTACGCNTGAACGACAATAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_5237#0 GGTACCGGAAAAGCGGATCATTTTCCACTTCGTTCTAGTTCAGTATGGAATCGCTGGAAA 60 consensus_5237#1 ------------------------------------------------------------ consensus_5237#0 AGCCAAATGCTGGGAAGGATGCCGAGAAGGATAAGGCTGTGACGAAGGCAAAGGGACGCC 120 consensus_5237#1 ------------------------------------------------------------ consensus_5237#0 ACCGGAGCAAGCACAAGTTCAACTCGATTCGCAAGCAGATAGAATTTTACTTCTCCGACG 180 consensus_5237#1 ------------------------------------------------------------ consensus_5237#0 CTAACCTGACCAAAGACCGTTACATGGGACAGCTGCTGCGGAATGGGCCATTCATTCCAC 240 consensus_5237#1 ------------------------------------------------------------ consensus_5237#0 TGGAAGAGTTTTTAAAGTTCAACAAAATCAAAGCCCTCACTACGAACGTCGACGAGATAG 300 consensus_5237#1 ------------------------------------------------------------ consensus_5237#0 CGAATGCGTTTGAAAAATTCCACCCTGCTGGAGCTTTCCGACGATCGGGCGAAGGTGCGC 360 consensus_5237#1 ------------------------------------------------------------ consensus_5237#0 CGCAAGACGGAGGTTGTGGTGAAGGCCAACAGCGAGGAGTGTACGATCTACGTGGAAAGT 420 consensus_5237#1 ------------------------------------------------------------ consensus_5237#0 TTGCCACCGAAAGCGGACCACGATTGGGTGCGGAATGTGTTTTCCAGCTACGGCACGGTG 480 consensus_5237#1 ------------------------------------------------------------ consensus_5237#0 GCGTACGTATCGCTGCCCAAGTTTCGAAACTCGGGCAAAATCAAAGAGTTTGGCTTTGTG 540 consensus_5237#1 ------------------------------------------------------------ consensus_5237#0 GAGTTCGACGAGGAGGCGAGTGTGCAGAAGGCACTGAAAGCGTTCCAAACGTTTGGCGGT 600 consensus_5237#1 ------------------------------------------------------------ consensus_5237#0 GTGCTGGCGTACGATACGACGGACCCGGCCAAGATGGCAAGCATCAAGACGTACGAACCG 660 consensus_5237#1 ------------------------------------------------------------ consensus_5237#0 GGAAAGGGAGCGCACAGCACGGTGAAGGCTCTGGCGAAACGAAAGCCGAACAGGGTGCTG 720 consensus_5237#1 ------------------------------------------------------------ consensus_5237#0 ACATGGAGAAGCCGAATGAATCATCCACCGGTTCGATGGCTGAAGACGATGGTAACAAGC 780 consensus_5237#1 ------------------------------------------------------------ consensus_5237#0 GTGAGGAGGATGGCGATGAACCACCAGCGAAGAGACACAAAATCGATCCAACGAGTGACG 840 consensus_5237#1 ------------------------------------------------------------ consensus_5237#0 AGGACGATGACACACAGGACGATCAGCAGTCGGATCGGGAAGCAAATGGGCAGAAGGTTG 900 consensus_5237#1 ------------------------------------------------------------ consensus_5237#0 AGCCAGCAAGCGAAGAAGAGTTCCAGTCGGATCAGGAAGAGCCCGTCGGAGAGCATGATA 960 consensus_5237#1 ------------------------------------------------------------ consensus_5237#0 ACAAGGATGGGACGGACCAAGCAGAGGGTGATGGGCAGGATGTGAAACAAGACACTGGAA 1020 consensus_5237#1 ------------------------------------------------------------ consensus_5237#0 AGAAGAAATGCCGCCAAAGGAAGGGTTGCAGCATCATCAAGAAAGAGCTGCAGCTGGACG 1080 consensus_5237#1 ------------------------------------------------------------ consensus_5237#0 ATAAGGTTTACGAGCTCAAAATAATGACCAAGAAAGAATGGCG--CCGGCTGAGAAACAA 1138 consensus_5237#1 -----------------------------AAGAATTGCCTGAGGTTCGGCTGAGAAACAA 31 ***** * * ************** consensus_5237#0 GTATCTC-AACCTGCAAAAGGAAGAGGCAAAAAAGTTGAAGCGCTTGTTCCACCAAACGG 1197 consensus_5237#1 GTATCTCCAACCTGCAAAAGGAATATGCAAAAAAGCTGAAGCGCTTGTTCCAGCAGACGG 91 ******* *************** * ********* **************** ** **** consensus_5237#0 ACAAGCATCATCATCATCATCATCATCATCAGCGGGGTGGCCATCCGAAGACGATTGCTT 1257 consensus_5237#1 ACAAGCATCCTCATCATCATCATCAGCGT--GNTGTGTG-CCATCCGAAGACGATTGCTT 148 ********* *************** * * * * *** ******************** consensus_5237#0 CCCATCC-GAGC-GGTG-GAATTGCGATCAAATC-GATTAAATCCTCCCCGAG-GGTAAA 1312 consensus_5237#1 CCCATCCTGAGCTGGTGTGAATTGCGATCAAATCTGATCAAATCCTCCCCGAGTGGTAAA 208 ******* **** **** **************** *** ************** ****** consensus_5237#0 TTTCTACG-GCGCCATGCCGGTTGAG-GAG-GACGAG-GAGCAC--GGCGAGCAGGATGG 1366 consensus_5237#1 TTTCTACGTGTGCCATGCCGGTTGAGTGAGTGACGAGTGAGCACTGNGTGAGCAGGACGG 268 ******** * *************** *** ****** ****** * ******** ** consensus_5237#0 TACCGGCAGCCACCTGCTTCAGCCGGAAGCGG--CCGAGGAGAGT-GCGG-CCAC--GGC 1420 consensus_5237#1 AACCGGATGGCACTGGTTCAGCCTGGAAGCTGTGCGAATGAGAGTTGCAGACCACAGGNG 328 ***** * *** * * * ****** * * * ****** ** * **** * consensus_5237#0 AAAGCGGCCGCTCTTCT-------CGTTCGAGCCCGG-TCTGATCGTGAGCATAAAGTTT 1472 consensus_5237#1 AAAGCGGCGCNTCTATTATACAGGTNACAGAGCCCGGGTCTGATCGTGAGCATTAACGTT 388 ******** *** * ******** *************** ** ** consensus_5237#0 C---GCGAACCGTGCGTCGATGTGAAGGATTTCCGGGC-CGAGCTGAAGCAG---TACCC 1525 consensus_5237#1 CTCTGCGAACCGTGCGTCGATGTGAAGGATTTCGGGNCGCAGACTGAANCAAGTACACCC 448 * ***************************** ** * * ***** ** **** consensus_5237#0 GTACG---TGAAGTATATTGACCTGAAGGAGGGCGACT-------TTGAGGCGTT-TGTG 1574 consensus_5237#1 GTACAGATTAAGGTATATTGANCTTGAAACGAGNGGCCGAAATTATGAANGCGTAATGTG 508 **** * * ********* ** * * * * * * * **** **** consensus_5237#0 C--------GCGTCGATACGCCCGCG---TCGGCCGTG---GCGCTCGTGAA---GGAGT 1617 consensus_5237#1 CAGCACTCTGCAATAANAGCCCTGGGGTACNGNACGAGTGGACCACCGTGAAACNGAGGT 568 * ** * * ** * * * ** * * ****** * ** consensus_5237#0 ACT--GCTCGGCGGAGCACAGCGCGCAGATACTGAGCGGCGAGCAGG--AGCAGCAGTAC 1673 consensus_5237#1 ACCTGGTCCGGCAGGACACACAACANAGAGGCGGCCCAGAAAAATAACCATNTGNANNAC 628 ** * **** * **** * *** * * * * * * * * ** consensus_5237#0 TGGGACAAGATGATGC----GCGACCGGGAGGACAAGCTGAACAAGCGCG----TCAAGA 1725 consensus_5237#1 CGAGGCGGGAAGCCANCAGGAAGANCACAAGCACAGACTAACATAGTGGGGAAACCACNA 688 * * * ** * ** * ** *** ** * ** * * ** * consensus_5237#0 CGGAGCG---CATTCGAGGGCGTACGAGGT-TAATTCGTAAGATAAACAGTCACATTAAG 1781 consensus_5237#1 NAGAAANTGACANTGACGGCCGGACACGGNGCGAGCAGACGGAACAANAGACGNCCTAAA 748 ** ** * ** ** ** ** * * ** ** ** * *** consensus_5237#0 TTTGATGATGAC-GATGAATAATGGCACAAAACGACC---TTGATGGGATTATGGCGAAA 1837 consensus_5237#1 CCAAAGACGGACCGGTACNCAAAAGCACNAGGAGGCAAGACCGGCGCAATTACACTCAAA 808 * *** * * ** **** * * * * * **** *** consensus_5237#0 TAA-AGTGAA-------------------------------------------- 1846 consensus_5237#1 GAGTGNTGGATATACNNAANAANATATAGAATGTACGCNTGAACGACAATAAAA 862 * ** * |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||