These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5238#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1263 fasta sequence [CCGCCCACGCGTCCGGTGCCGGCGAAGGACTGGTGCGACGAGCAGGACCTGCCGGAGGAGACGCGCTGCAAGGTGGAGGGGCTGAAGACGATGGCCCGCTGGCTGCTCGGGCTGAAGAAGGACGTGCTGTCAGCGCAGAAGACGTTCCGCATGCTGAACGCGTTCATCAGCAAGAAGGGCGACCTGCTCGAGCAGGGCGGCGCACTGTCCGCGGCGGAAAAGTCGTGGCTCCGCCTCAGTGCCGGCAAGGCGATGCTGAAGATCTGCGAGCAGAAGGGTGTAGGGGATCAGTTCATTGCGGAGCAGTTCTACAACCTGTCGCAGTTGATGACTGATCCAGTGCCGGAGGTGCGCGATACGTTCGTGAAGAAGCTACACAAAGGCCTGAGCAAGGGCATTCCGCACAAGTGCCTTCCGCTTGATTTCATGGGCTACTATGCGCTCGGCGGAAGAGAAACAGATCAAACTTTGTTCGCTCAAATCAGATCAAACATAGAGACAGACGTCAACAGACGACGAGAGTACGTGAAAAACTTCACCACAGTTGAGCGTGGCATGAGTCAGCTGCCGCACATTCTACCGGACTATATGCTCGTGTTTGCCGTGACGGTTCTGACGCACGATCCTCATTTTACGCGCCCAAACGATCCGGCCCAGCTGCGACAGATAGAACGGTGCCTGTGGCTCGTACTGGAACCACTCGTCATGAACAAGGAGTTCTTCTGCTTTAGCTTCTACAAAAATTTGATCGAACGTATTAAACACCACAAGGACGCCCTCAAGCCCGAGGACGAGGAAACGAATCACAAACTGTGGGCCATTTGTGATGTCGCGATGGGGCTCATACTCACCCGTCTAACGTTCTACGATATGCGGGAAGCACCGGCCGAGGCACGCATACCGTCGATGTACTTCCAGGCCCAGCCGGAAGACTTCCAAAACACGCGCTACTACATTCCCGATGACATGTACAACTTAACGGATCGGAGCGGTCGCAGTGCGGTCCCGTCAGGCTCGAAGACACTGGCGCCTGCGGCCAAACCCAAACCCCAAGCCCCGACCACTTCCGCATCCGCTTCGTCCTCGTCATCCAGCGCGACAGCCTGCGCGTCCTCCTCTTCATCGCTTACACTGCCGGTCACATCTAGTTCGTCAGCGATGGAACGGAACAAACTCAAAACGAAATTCGCTCGCCAAGCAGTTCACGACGATGACGAACACAACAATGGGCAGGACGAGGGAGAAGATACCGGTCCACCACCC] [+] EMBL BM610502 [CCGCCCACGCGTCCGGTGCCGGCGAAGGACTGGTGCGACGAGCAGGACCTGCCGGAGGAGACGCGCTGCAAGGTGGAGGGGCTGAAGACGATGGCCCGCTGGCTGCTCGGGCTGAAGAAGGACGTGCTGTCAGCGCAGAAGACGTTCCGCATGCTGAACGCGTTCATCAGCAAGAAGGGCGACCTGCTCGAGCAGGGCGGCGCACTGTCCGCGGCGGAAAAGTCGTGGCTCCGCCTCAGTGCCGGCAAGGCGATGCTGAAGATCTGCGAGCAGAAGGGTGTAGGGGATCAGTTCATTGCGGAGCAGTTCTACAACCTGTCGCAGTTGATGACTGATCCAGTGCCGGAGGTGCGCGATACGTTCGTGAAGAAGCTACACAAAGGCCTGAGCAAGGGCATTCCGCACAAGTGCCTTCCGCTTGATTTCATGGGCTACTATGCGCTCGGCGGAAGAGAAACAGATCAAACTTTGTTCGCTCAAATCAGATCAAACATAGAGACAGACGTCAACAGACGACGAGAGTACGTGAAAAACTTCACCACAGTTGAGCGTGGCATGAGTCAGCTGCCGCACATTCTACCGGACTATATGCTCGTGTTTGCCGTGACGGTTCTGACGCACGATCCTCATTTTACGCGCCCAAACGATCCGGCCCAGCTGCGAC ] [+] EMBL BM605596 [ ccgATTCTACCGGACTATATGCTCGTGTTTGCCGTGACGGTTCTGACGCACGATCCTCATTTTACGCGCCCAAACGATCCGGCCCAGCTGCGACAGATAGAACGGTGCCTGTGGCTCGTACTGGAACCACTCGTCATGAACAAGGAGTTCTTCTGCTTTAGCTTCTACAAAAATTTGATCGAACGTATTAAACACCACAAGGACGCCCTCAAGCCCGAGGACGAGGAAACGAATCACAAACTGTGGGCCATTTGTGATGTCGCGATGGGGCTCATACTCACCCGTCTAACGTTCTACGATATGCGGGAAGCACCGGCCGAGGCACGCATACCGTCGATGTACTTCCAGGCCCAGCCGGAAGACTTCCAAAACACGCGCTACTACATTCCCGATGACATGTACAACTTAACGGATCGGAGCGGTCGCAGTGCGGTCCCGTCAGGCTCGAAGACACTGGCGCCTGCGGCCAAACCCAAACCCCAAGCCCCGACCACTTCCGCATCCGCTTCGTCCTCGTCATCCAGCGCGACAGCCTGCGCGTCCTCCTCTTCATCGCTTACACTGCCGGTCACATCTAGTTCGTCAGCGATGGAACGGAACAAACTCAAAACGAAATTCGCTCGCCAAGCAGTTCACGACGATGACGAACACAACAATGGGCAGGACGAGGGAGAAGATACCGGTCCACCACCC] consensusID : consensus_5238#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 659 fasta sequence [CCGGCCGTACGTGCTGAAGGCGTTCACGTACCTTGGCCGCTACAAGTCACTGATCGAGTCGCACCCGGCCATCCTGAAGGAGTTGGCCCCGCTCTGCAAAGAGTTTGCGATCGCAGGCACACCGAAGCAGGCGAAGCACGCGATCCGCTGTATGTTCGTAAACACGCAGACGGGCAACAGCGCTGCCGTGGATCCGCTAGCGACGGGTGCGCCCGGATCGGACCTCAGCGCGATCGACATCTTCCCGGACATTGTCGAGGGCATGAAGCAAACGTTGCACCCGCAGAGCGAACACTACCGCACGGCGATCGTGACGCTCGGGCACATCGCGTACAATCTGCCGGACAAGTTCCACGTGCAGATCAAGAACATTATCTCGCGCAAGATCGTGAAGGAGCTGCTGGTGAAGGAAACGTCGGACGGGCGGTCGAACGTGCCGGCGAAGGACTGGTGCGACGAGCAGGATCTGCCGGAGGAGACGCGCTGCAAGGTGGAGGGGCTGAAGACGATGGCCCGCTGGCTGCTCGGGCTGAAGAAGGACGTGCTGTCGGCGCAGAAGACGTTCCGCATGCTGAACGCGTTCATCAGCAAGAAGGGCGACCTGCTCGAGCAGGGCGGCGCACTGTCCGCGGCGGAAAAGTCGTGGCTCCGCCTCAGTG] [+] EMBL BM581214 [CCGGCCGTACGTGCTGAAGGCGTTCACGTACCTTGGCCGCTACAAGTCACTGATCGAGTCGCACCCGGCCATCCTGAAGGAGTTGGCCCCGCTCTGCAAAGAGTTTGCGATCGCAGGCACACCGAAGCAGGCGAAGCACGCGATCCGCTGTATGTTCGTAAACACGCAGACGGGCAACAGCGCTGCCGTGGATCCGCTAGCGACGGGTGCGCCCGGATCGGACCTCAGCGCGATCGACATCTTCCCGGACATTGTCGAGGGCATGAAGCAAACGTTGCACCCGCAGAGCGAACACTACCGCACGGCGATCGTGACGCTCGGGCACATCGCGTACAATCTGCCGGACAAGTTCCACGTGCAGATCAAGAACATTATCTCGCGCAAGATCGTGAAGGAGCTGCTGGTGAAGGAAACGTCGGACGGGCGGTCGAACGTGCCGGCGAAGGACTGGTGCGACGAGCAGGATCTGCCGGAGGAGACGCGCTGCAAGGTGGAGGGGCTGAAGACGATGGCCCGCTGGCTGCTCGGGCTGAAGAAGGACGTGCTGTCGGCGCAGAAGACGTTCCGCATGCTGAACGCGTTCATCAGCAAGAAGGGCGACCTGCTCGAGCAGGGCGGCGCACTGTCCGCGGCGGAAAAGTCGTGGCTCCGCCTCAGTG] consensusID : consensus_5238#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 650 fasta sequence [CAGAATCCCCGAGGTTNAGTGAAAAACTTCACCACAGCTTGAGCGTGGCATGAGTCAGCTGCCGCACATTCTACCGGACTATATGCTCGTGTTTGCCGTGACGGTTCTGACGCACGATCCTCATTTTACGCGCCCAAACGATCCGGCCCAGCTGCGACAGATAGAACGGTGCCTGTGGCTCGTACTGGAACCACATCGTCATGAACAACGGAGTTCTTCTGCTTTAGCTTCTACAAAAATTTGATCGAACGTATTAAACACCGAGGAAGGACGCCCTCAAGCCCGAGGACGGAGGAAACTGAATCACAAACTGTGGGCCATATTGTGATTGTCGCGATGGGGCTCATACTCACCCGTACTAACGTTCTACGATATGCGGGAAGCACCGGCCGAGGCACGCATACCGTCGATGTACATTCCAGGNCCAGCCGGAAGACTTCCAAAACACGCGCTACTACATTCCCGATGACATGTACAACTTAACGGATCGGAGCGGTCAGCCAGTGCGGTACCCGTACGGCTCGAAGGACACTGGCGCTGCGGCAAAACCAAAGACCCAAGCCCCAGACAGTTTCCAANATACGATTCNGTACCTCGTCATNCAGNAGCGACAGNCCTGAGCGGTACCTCCTCTTCCATCCGCTTACACT] [+] EMBL AL696420 [CAGAATCCCCGAGGTTNAGTGAAAAACTTCACCACAGCTTGAGCGTGGCATGAGTCAGCTGCCGCACATTCTACCGGACTATATGCTCGTGTTTGCCGTGACGGTTCTGACGCACGATCCTCATTTTACGCGCCCAAACGATCCGGCCCAGCTGCGACAGATAGAACGGTGCCTGTGGCTCGTACTGGAACCACATCGTCATGAACAACGGAGTTCTTCTGCTTTAGCTTCTACAAAAATTTGATCGAACGTATTAAACACCGAGGAAGGACGCCCTCAAGCCCGAGGACGGAGGAAACTGAATCACAAACTGTGGGCCATATTGTGATTGTCGCGATGGGGCTCATACTCACCCGTACTAACGTTCTACGATATGCGGGAAGCACCGGCCGAGGCACGCATACCGTCGATGTACATTCCAGGNCCAGCCGGAAGACTTCCAAAACACGCGCTACTACATTCCCGATGACATGTACAACTTAACGGATCGGAGCGGTCAGCCAGTGCGGTACCCGTACGGCTCGAAGGACACTGGCGCTGCGGCAAAACCAAAGACCCAAGCCCCAGACAGTTTCCAANATACGATTCNGTACCTCGTCATNCAGNAGCGACAGNCCTGAGCGGTACCTCCTCTTCCATCCGCTTACACT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_5238#0 CCGCCCACGCGTCCGGTGCCGGCGAAGGACTGGTGCGACGAGCAGGACCTGCCGGAGGAG 60 consensus_5238#2 ------------------------------------------------------------ consensus_5238#1 ------------------------------------------------------------ consensus_5238#0 ACGCGCTGCAAGGTGGAGGGGCTGAAGACGATGGCCCGCTGGCTGCTCGGGCTGAAGAAG 120 consensus_5238#2 ------------------------------------------------------------ consensus_5238#1 ------------------------------------------------------------ consensus_5238#0 GACGTGCTGTCAGCGCAGAAGACGTTCCGCATGCTGAACGCGTTCATCAGCAAGAAGGGC 180 consensus_5238#2 ------------------------------------------------------------ consensus_5238#1 ------------------------------------------------------------ consensus_5238#0 GACCTGCTCGAGCAGGGCGGCGCACTGTCCGCGGCGGAAAAGTCGTGGCTCCGCCTCAGT 240 consensus_5238#2 ------------------------------------------------------------ consensus_5238#1 ------------------------------------------------------------ consensus_5238#0 GCCGGCAAGGCGATGCTGAAGATCTGCGAGCAGAAGGGTGTAGGGGATCAGTTCATTGCG 300 consensus_5238#2 ------------------------------------------------------------ consensus_5238#1 ------------------------------------------------------------ consensus_5238#0 GAGCAGTTCTACAACCTGTCGCAGTTGATGACTGATCCAGTGCCGGAGGTGCGCGATACG 360 consensus_5238#2 ------------------------------------------------------------ consensus_5238#1 ------------------------------------------------------------ consensus_5238#0 TTCGTGAAGAAGCTACACAAAGGCCTGAGCAAGGGCATTCCGCACAAGTGCCTTCCGCTT 420 consensus_5238#2 ------------------------------------------------------------ consensus_5238#1 ------------------------------------------------------------ consensus_5238#0 GATTTCATGGGCTACTATGCGCTCGGCGGAAGAGAAACAGATCAAACTTTGTTCGCTCAA 480 consensus_5238#2 ------------------------------------------------------------ consensus_5238#1 ------------------------------------------------------------ consensus_5238#0 ATCAGATCAAACATAGAGACAGACGTCAACAGACGACGAGAGTACGTGAAAAACTTCACC 540 consensus_5238#2 ---------------------------CAGAATCCCCGAGGTTNAGTGAAAAACTTCACC 33 consensus_5238#1 ----------------------CCGGCCGTACGTGCTGAAGGCGTTCACGTACCTTGGCC 38 * ** * *** ** consensus_5238#0 ACAG-TTGAGCGTGGCATGAGTCAGCTGCCGCACATTCTACCGGACTATATGCTCGTGTT 599 consensus_5238#2 ACAGCTTGAGCGTGGCATGAGTCAGCTGCCGCACATTCTACCGGACTATATGCTCGTGTT 93 consensus_5238#1 GCTA-CAAGTCACTGATCGAGTC-GCACCCGGCCATCCTGAAGGA--GTTGGCCCCGCTC 94 * * * ***** ** *** *** ** *** * ** * * consensus_5238#0 TGCCGTGACGGTTCTGACGCACGATCCTCATTTTACGCGCC-CAAACGATCCGGCCCAGC 658 consensus_5238#2 TGCCGTGACGGTTCTGACGCACGATCCTCATTTTACGCGCC-CAAACGATCCGGCCCAGC 152 consensus_5238#1 TGCAAAGAGTTTGCGATCGCAGGCACACCGAAGCAGGCGAAGCACGCGATCCGCTGTATG 154 *** ** * * **** * * * * *** ** ******* * consensus_5238#0 TGCG---ACAGATAGAACGGTGCCTGTGGCTCGTACTGGAACCAC-TCGTCATGAACAA- 713 consensus_5238#2 TGCG---ACAGATAGAACGGTGCCTGTGGCTCGTACTGGAACCACATCGTCATGAACAAC 209 consensus_5238#1 TTCGTAAACACGCAGACGGGCAACAGCG--CTGCCGTGGATCCGC-TAGCGACGGGTGC- 210 * ** *** *** ** * * * * **** ** * * * * * consensus_5238#0 GGAGTTCTTCTGCTTTAGCTTCTACAAAAATTTGATCGAACGTATTAAACACCAC--AAG 771 consensus_5238#2 GGAGTTCTTCTGCTTTAGCTTCTACAAAAATTTGATCGAACGTATTAAACACCGAGGAAG 269 consensus_5238#1 -GCCCGGATCGGACCTCAGCGCGATCGACATCTTCCCGGACATTGTCGAGGGCATG-AAG 268 * ** * * * * * ** * ** ** * * * * *** consensus_5238#0 GACGCCCTCAAGCCCGAGGACG-AGGAAAC-GAATCACAA-----ACTGTGGGCCAT-TT 823 consensus_5238#2 GACGCCCTCAAGCCCGAGGACGGAGGAAACTGAATCACAA-----ACTGTGGGCCATATT 324 consensus_5238#1 CAAACGTTGCACCCGCAGAGCGAACACTACCGCACGGCGATCGTGACGCTCGGGCACATC 328 * * * * ** ** ** * ** * * * * ** * ** ** * consensus_5238#0 GTG----AT-GTCGCGATGGGGCTCATACTCA--CCCGT-CTAACGTTCTACGATATG-C 874 consensus_5238#2 GTG----ATTGTCGCGATGGGGCTCATACTCA--CCCGTACTAACGTTCTACGATATG-C 377 consensus_5238#1 GCGTACAATCTGCCGGACAAGTTCCACGTGCAGATCAAGAACATTATCTCGCGCAAGATC 388 * * ** * ** * ** ** * * * ** * * consensus_5238#0 GGGAAGCACCGGCCGAGGCACGCATACCGTCGATGTAC-TTCCAG-GCCCAGCCGGAAGA 932 consensus_5238#2 GGGAAGCACCGGCCGAGGCACGCATACCGTCGATGTACATTCCAG-GNCCAGCCGGAAGA 436 consensus_5238#1 GTGAAGGAGCTGCTGGTG-AAGGAAACGTCGGACGGGCGGTCGAACGTGCCGGCGAAGGA 447 * **** * * ** * * * * * ** ** * * ** * * * * ** * ** consensus_5238#0 CTTCCAAAACACGCGCTACTACATTCCCGATGACATGTACAACTTAACGGATCGGAGCGG 992 consensus_5238#2 CTTCCAAAACACGCGCTACTACATTCCCGATGACATGTACAACTTAACGGATCGGAGCGG 496 consensus_5238#1 CTGGTGCGACGAGC---AGGATCTGCCGGAGGAGACGCGCTGCAAGGTGGAGGGGCTGAA 504 ** ** ** * * * ** ** ** * * * * *** ** consensus_5238#0 TCG--CAGTGCGGT-CCCGTCAGGCTCGAAG-ACACTGGCGCCTGCGGCCAAACCCAAAC 1048 consensus_5238#2 TCAGCCAGTGCGGTACCCGTACGGCTCGAAGGACACTGGCGC-TGCGGCAAAACCAAAGA 555 consensus_5238#1 GACGATGGCCCGCTGGCTGCTCGGGCTGAAGAAGGACG-TGCTGTCGGCGCAGAAGACGT 563 * ** * * * ** **** * * ** **** * * consensus_5238#0 CCCAAGCCCCGACCACTTCC--GCATCCGCTTCGT--CCTCGTCATCCAGC---GCG-AC 1100 consensus_5238#2 CCCAAGCCCCAGACAGTTTCCAANATACGATTCNGTACCTCGTCATNCAGNA--GCG-AC 612 consensus_5238#1 TCCGCATGCTGAACGCGTTCATCAGCAAGAAGGGCGACCTGCTCGAGCAGGGCGGCGCAC 623 ** * * * * * *** ** *** *** ** consensus_5238#0 AGCCT---GCGCGTCCTCCTCTTCA--TCGCTTACACTGCCGGTCACATCTAGTTCGTCA 1155 consensus_5238#2 AGNCCTGAGCGGTACCTCCTCTTCCATCCGCTTACACT---------------------- 650 consensus_5238#1 TGTCCGCGGCGGAAAAGTCGTGGCT--CCGCCT-CAGTG--------------------- 659 * * *** * * *** * ** * consensus_5238#0 GCGATGGAACGGAACAAACTCAAAACGAAATTCGCTCGCCAAGCAGTTCACGACGATGAC 1215 consensus_5238#2 ------------------------------------------------------------ consensus_5238#1 ------------------------------------------------------------ consensus_5238#0 GAACACAACAATGGGCAGGACGAGGGAGAAGATACCGGTCCACCACCC 1263 consensus_5238#2 ------------------------------------------------ consensus_5238#1 ------------------------------------------------ |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||