These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5244#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 1377 fasta sequence [TTGTTAGGCAGAAGACTGACGGGAACCGAGAAATTTGGAGGAGAGATTGCTTAAGTCTGCGTCGGGTACGACCATGATAAGCGAGCCGAGTACGGCCGGCACGAGCGGGAAGGATGCATGCCCGGAGGGAGATGTGGTACTTGAGACGCCTCGGATTCTCACCCGACGGGGATCGACCGAGAGTGGATTCTTTTCCTGCCTCAACGAGGACTTTGGTACGTACAAATCGTCACCTTGCTGCTGTCTGGATCAGATTACACACTTCGAATCGACGGACCGGCTGTCGATGTGCAGATGCATCTACGCGGGTGCGGCAACGTTGACCGGTGCAGGAGGACCAGGTACTGCGTCGAGTGGAACGCCTGCCGACGGACTGACCGGACTGATGTCCAACCAGACATTGAACGACAGCTCAAGCATACTGTTCTTCGACGATAGCTCAACCACGGTCAGCTCGCTGCGCAGCATGGACGATCTGGAGCTGTCAGATTCGATACGAAAGCGCTTCAACCACCTGCACCATCTCCATCCGGTGCATCACCAGCTGCACAACCGGCACCACCACTTGCTGAGCAATGTGGACATCGATGCCCGGTCGATTGACATGGGTCTGATCAATCGGTTGGCGCTCGATTCCGAAATAAGCAGCATGATTCAAAAAAACCAGTTCACCAACCAGCTGCTGTACTGCAAGAACCGTTCCTCGTCGATTTTCACCGACAGCTCGGACGATATCAGCAGCCTGGCCGGTTCGGACTCGCTGCTTGTGGGATGATCGCTCGTGCACGACTATGCCAAACACTCGCTCTGCTCAGATCGCCAAGATCGTGGAGTATTTCGAGCGCAAGGGCCAAACATTCAAACCATTCACTGTACCTGATACGCTACAGCTGGGCGCATCTGCCTCCGGGGGCCACTGCGGTGGCGGCGGAACAGGCAGCTCCGTGCATCTGCAGCATCATCATCACCATCACCATCATCATCTACATCACCATCGCCCTAGTGCGGCCTATGCAGCGGGAACGAACGCATCGTCCTGTGCTGGGATGGGTGCCACGGCCACGGGCGGTGCTGCACCAACGGCTTCCACCAATACAGCAACACCAAATGGAGCGGTCGTGGACAGTGGGCGACGGCATTCTTCCACTTCCGGGGCCGTAACTTCCGCGGCAGCCAATGCAAAGCTGTCTCAGGCTGAACTAAAGCAACGCTTCGAGTACGAAGCGTTCTGTCTGGAGCTGGAGCGAAAGCAGCAAGCTTCCGTCACAGTCCCGAACGCTCCCCAAATACGGTTAAACAACATCTGCGAGGGTAACGTTCGCTCAAAACTGCAACTGTTCGATAAGCAGAGACAGCAGAGCAACGCTGCGGCGGCTG] [+] EMBL BX628694 [TTGTTAGGCAGAAGACTGACGGGAACCGAGAAATTTGGAGGAGAGATTGCTTAAGTCTGCGTCGGGTACGACCATGATAAGCGAGCCGAGTACGGCCGGCACGAGCGGGAAGGATGCATGCCCGGAGGGAGATGTGGTACTTGAGACGCCTCGGATTCTCACCCGACGGGGATCGACCGAGAGTGGATTCTTTTCCTGCCTCAACGAGGACTTTGGTACGTACAAATCGTCACCTTGCTGCTGTCTGGATCAGATTACACACTTCGAATCGACGGACCGGCTGTCGATGTGCAGATGCATCTACGCGGGTGCGGCAACGTTGACCGGTGCAGGAGGACCAGGTACTGCGTCGAGTGGAACGCCTGCCGACGGACTGACCGGACTGATGTCCAACCAGACATTGAACGACAGCTCAAGCATACTGTTCTTCGACGATAGCTCAACCACGGTCAGCTCGCTGCGCAGCATGGACGATCTGGAGCTGTCAGATTCGATACGAAAGCGCTTCAACCACCTGCACCATCTCCATCCGGTGCATCACCAGCTGCACAACCGGCACCACCACTTGCTGAGCAATGTGGACATCGATGCCCGGTCGATTGACATGGGTCTGATCAATCGGTTGGCGCTCGATTCCGAAATAAGCAGCATGATTCAAAAAAACCAGTTCACCAACCAGCTGCTGTACTGCAAGAACCGTTCCTCGTCGATTTTCACCGACAGCTCGGACGATATCAGCAGCCTGGCCGGTTCGGACTCGCTGCTTGTGGGATGATCGCTCGTGCACGACTATGCCAAACACTCGCTCTGCTCAGATCGCCAAGATCGTGGAGTATTTCGAGCGCAA ] [+] EMBL BM575840 [ ccgGCAAGAACCGTTCCTCGTCGATTTTCACCGACAGCTCGGACGATATCAGCAGCCTGGCCGGTTCGGACTCGCTGC TGTGGGATGATCGCTCGTGCACGACTATGCCAAACACTCGCTCTGCTCAGATCGCCAAGATCGTGGAGTATTTCGAGCGCAAGGGCCAAACATTCAAACCATTCACTGTACCTGATACGCTACAGCTGGGCGCATCTGCCTCCGGGGGCCACTGCGGTGGCGGCGGAACAGGCAGCTCCGTGCATCTGCAGCATCATCATCACCATCACCATCATCATCTACATCACCATCGCCCTAGTGCGGCCTATGCAGCGGGAACGAACGCATCGTCCTGTGCTGGGATGGGTGCCACGGCCACGGGCGGTGCTGCACCAACGGCTTCCACCAATACAGCAACACCAAATGGAGCGGTCGTGGACAGTGGGCGACGGCATTCTTCCACTTCCGGGGCCGTAACTTCCGCGGCAGCCAATGCAAAGCTGTCTCAGGCTGAACTAAAGCAACGCTTCGAGTACGAAGCGTTCTGTCTGGAGCTGGAGCGAAAGCAGCAAGCTTCCGTCACAGTCCCGAACGCTCCCCAAATACGGTTAAACAACATCTGCGAGGGTAACGTTCGCTCAAAACTGCAACTGTTCGATAAGCAGAGACAGCAGAGCAACGCTGCGGCGGCTG] consensusID : consensus_5244#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 691 fasta sequence [CCGCGGACGCGTGGGGTTGACCGGTGCAGGAGGACCAGGTACTGCGTCGAGTGGAACGCCTGCCGACGGACTGACCGGACTGATGTCCAACCAGACATTGAACGACAGCTCAAGCATACTGTTCTTCGACGATAGCTCAACCACGGTCAGCTCGCTGCGCAGCATGGACGATCTGGAGCTGTCAGATTCGATACGAAAGCGCTTCAACCACCTGCACCATCTCCATCCGGTGCATCACCAGCTGCACAACCGGCACCACCACTTGCTGAGCAATGTGGACATCGATGCCCGGTCGATTGACATGGGTCTGATCAACCGGTTGGCGCTCGATTCCGAAATAAGCAGCATGATTCAAAAGAACCAGTTCACCAACCAGCTGCTGTACTGCAAGAACCGTTCCTCGTCGATTTTCACCGACAGCTCGGACGATATCAGCAGCCTGGCCGGTTCGGACTCGCTGCTGTGGGATGATCGCTCGTGCACGACCATGCCAAACACTCGCTCTGCCCAGATCGCCAAGATCGTGGAGTATTTCGAGCGCAAGGGCCAAACATTCAAACCATTCACTGTACCTGATACGCTACAGCTGGGCGCATCTGCCTCCGGGGGCCACTGGCGGTGGCGGTGGAACAAGGCAGCTCCGTGCATCTGCAGCATCATCATCACCATCACCATCATCATCTACATCACC] [+] EMBL BM636997 [CCGCGGACGCGTGGGGTTGACCGGTGCAGGAGGACCAGGTACTGCGTCGAGTGGAACGCCTGCCGACGGACTGACCGGACTGATGTCCAACCAGACATTGAACGACAGCTCAAGCATACTGTTCTTCGACGATAGCTCAACCACGGTCAGCTCGCTGCGCAGCATGGACGATCTGGAGCTGTCAGATTCGATACGAAAGCGCTTCAACCACCTGCACCATCTCCATCCGGTGCATCACCAGCTGCACAACCGGCACCACCACTTGCTGAGCAATGTGGACATCGATGCCCGGTCGATTGACATGGGTCTGATCAACCGGTTGGCGCTCGATTCCGAAATAAGCAGCATGATTCAAAAGAACCAGTTCACCAACCAGCTGCTGTACTGCAAGAACCGTTCCTCGTCGATTTTCACCGACAGCTCGGACGATATCAGCAGCCTGGCCGGTTCGGACTCGCTGCTGTGGGATGATCGCTCGTGCACGACCATGCCAAACACTCGCTCTGCCCAGATCGCCAAGATCGTGGAGTATTTCGAGCGCAAGGGCCAAACATTCAAACCATTCACTGTACCTGATACGCTACAGCTGGGCGCATCTGCCTCCGGGGGCCACTGGCGGTGGCGGTGGAACAAGGCAGCTCCGTGCATCTGCAGCATCATCATCACCATCACCATCATCATCTACATCACC] consensusID : consensus_5244#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 609 fasta sequence [TGGCTCAGCCAGAATTGCACGAGGTTACTGCCGACGGACTGACCGGACTGATGTCAACCAGACATTGAACGACAGCTCAAGCATACTGTTCTTCGACGATAGCTCAACCACGGTCAGCTCGCTGCGCAGCATGGACGATCTGGAGCTGTCAGATTCGATACGAAAGCGCTTCAACCACCTGCACCATCTCCATCCGGTGCATCACCAGCTGACAACGGACCACATTGCTGAGGCAATTGTGGACATCGATGCCCGGTCGAATTGACCAATTGGGGTCTTGAATCAAATTCGGTTTGGGCGCTCGGATTTCCGAAATAAGGCAGCATGATTTCCAAAAAAGAAAACCCAAGGTTTCAAGGCCGAAAAACCCAATGCCTTTGCTTGTTAACTTTGCCACACGAAACCCTGTTTCCCTTCCGGTTCGGAATTATTATCAACCTGGACCAAGGCTTCCNGNGGAACGCGAATTATCAAGGGCCGAAGGCCCTTNGAGGCCCNGGGGTTCCGGGGAACCTTCCACGGCCTTGCCTTGGTTGGAGGGGAACTTTGGATTCCGGCTCCGGGTTGGCCAAACCGAAANTTTAATTTGGCGCAAAGAACGAGCTTCCN] [+] EMBL AL696601 [TGGCTCAGCCAGAATTGCACGAGGTTACTGCCGACGGACTGACCGGACTGATGTCAACCAGACATTGAACGACAGCTCAAGCATACTGTTCTTCGACGATAGCTCAACCACGGTCAGCTCGCTGCGCAGCATGGACGATCTGGAGCTGTCAGATTCGATACGAAAGCGCTTCAACCACCTGCACCATCTCCATCCGGTGCATCACCAGCTGACAACGGACCACATTGCTGAGGCAATTGTGGACATCGATGCCCGGTCGAATTGACCAATTGGGGTCTTGAATCAAATTCGGTTTGGGCGCTCGGATTTCCGAAATAAGGCAGCATGATTTCCAAAAAAGAAAACCCAAGGTTTCAAGGCCGAAAAACCCAATGCCTTTGCTTGTTAACTTTGCCACACGAAACCCTGTTTCCCTTCCGGTTCGGAATTATTATCAACCTGGACCAAGGCTTCCNGNGGAACGCGAATTATCAAGGGCCGAAGGCCCTTNGAGGCCCNGGGGTTCCGGGGAACCTTCCACGGCCTTGCCTTGGTTGGAGGGGAACTTTGGATTCCGGCTCCGGGTTGGCCAAACCGAAANTTTAATTTGGCGCAAAGAACGAGCTTCCN] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_5244#0 TTGTTAGGCAGAAGACTGACGGGAACCGAGAAATTTGGAGGAGAGATTGCTTAAGTCTGC 60 consensus_5244#1 ------------------------------------------------------------ consensus_5244#2 ------------------------------------------------------------ consensus_5244#0 GTCGGGTACGACCATGATAAGCGAGCCGAGTACGGCCGGCACGAGCGGGAAGGATGCATG 120 consensus_5244#1 ------------------------------------------------------------ consensus_5244#2 ------------------------------------------------------------ consensus_5244#0 CCCGGAGGGAGATGTGGTACTTGAGACGCCTCGGATTCTCACCCGACGGGGATCGACCGA 180 consensus_5244#1 ------------------------------------------------------------ consensus_5244#2 ------------------------------------------------------------ consensus_5244#0 GAGTGGATTCTTTTCCTGCCTCAACGAGGACTTTGGTACGTACAAATCGTCACCTTGCTG 240 consensus_5244#1 ------------------------------------------------------------ consensus_5244#2 ------------------------------------------------------------ consensus_5244#0 CTGTCTGGATCAGATTACACACTTCGAATCGACGGACCGGCTGTCGATGTGCAGATGCAT 300 consensus_5244#1 ------------------------------------------------------------ consensus_5244#2 ------------------------------------------------------------ consensus_5244#0 CTACGCGGGTGCGGCAACGTTGACCGGTGCAGGAGGACCAGGTACTGCGTCGAGTGGAAC 360 consensus_5244#1 --CCGCGGACGCG-TGGGGTTGACCGGTGCAGGAGGACCAGGTACTGCGTCGAGTGGAAC 57 consensus_5244#2 ---------------------------------TGGCTCAGCCA--GAATTGCACGAGGT 25 ** *** * * * * * consensus_5244#0 GCCTGCCGACGGACTGACCGGACTGATGTCCAACCAGACATTGAACGACAGCTCAAGCAT 420 consensus_5244#1 GCCTGCCGACGGACTGACCGGACTGATGTCCAACCAGACATTGAACGACAGCTCAAGCAT 117 consensus_5244#2 TACTGCCGACGGACTGACCGGACTGATGTC-AACCAGACATTGAACGACAGCTCAAGCAT 84 **************************** ***************************** consensus_5244#0 ACTGTTCTTCGACGATAGCTCAACCACGGTCAGCTCGCTGCGCAGCATGGACGATCTGGA 480 consensus_5244#1 ACTGTTCTTCGACGATAGCTCAACCACGGTCAGCTCGCTGCGCAGCATGGACGATCTGGA 177 consensus_5244#2 ACTGTTCTTCGACGATAGCTCAACCACGGTCAGCTCGCTGCGCAGCATGGACGATCTGGA 144 ************************************************************ consensus_5244#0 GCTGTCAGATTCGATACGAAAGCGCTTCAACCACCTGCACCATCTCCATCCGGTGCATCA 540 consensus_5244#1 GCTGTCAGATTCGATACGAAAGCGCTTCAACCACCTGCACCATCTCCATCCGGTGCATCA 237 consensus_5244#2 GCTGTCAGATTCGATACGAAAGCGCTTCAACCACCTGCACCATCTCCATCCGGTGCATCA 204 ************************************************************ consensus_5244#0 CCAGCTGCACAACCGGCACCACCACTTGCTGAGCAATGTGGACATCGATGCCCGGTCGA- 599 consensus_5244#1 CCAGCTGCACAACCGGCACCACCACTTGCTGAGCAATGTGGACATCGATGCCCGGTCGA- 296 consensus_5244#2 CCAGCTG-ACAACGGACCACATTGCTGA--GGCAATTGTGGACATCGATGCCCGGTCGAA 261 ******* ***** * * ** ** * * *********************** consensus_5244#0 TTGAC--AT--GGGTCT--GATCAA--TCGGTT--GGCGCTCGA--TTCCGAAATAAG-C 646 consensus_5244#1 TTGAC--AT--GGGTCT--GATCAA--CCGGTT--GGCGCTCGA--TTCCGAAATAAG-C 343 consensus_5244#2 TTGACCAATTGGGGTCTTGAATCAAATTCGGTTTGGGCGCTCGGATTTCCGAAATAAGGC 321 ***** ** ****** ***** ***** ******** ************ * consensus_5244#0 AGCATGATTCAAAAAAACCAGTTCACCAACCAGCTGCTGTACTGCAAGAACCGTTCCTCG 706 consensus_5244#1 AGCATGATTCAAAAGAACCAGTTCACCAACCAGCTGCTGTACTGCAAGAACCGTTCCTCG 403 consensus_5244#2 AGCATGATTTCCAAAAAAGAAAAC-CCAA--GGTTTCAAGGCCGAAAAACCCAATGC-CT 377 ********* ** ** * * **** * * * * * ** * ** * * * consensus_5244#0 TCGATTTTCACCGACAGCTCGGACGATATCAGCAGCCTGGCCGGTTCGGACTCGCTGCTT 766 consensus_5244#1 TCGATTTTCACCGACAGCTCGGACGATATCAGCAGCCTGGCCGGTTCGGACTCGCTGCT- 462 consensus_5244#2 TTGCTTGTTAACTTTGCCACACGAAAC-CCTGTTTCCCTTCCGGTTCGGAATTATT---- 432 * * ** * * * * * * * * ** ********** * * consensus_5244#0 GTGGGATGATCGCTCGTGCACGACTATGCCAAACACTCGCTCTGCTCAGATCGCCAAGAT 826 consensus_5244#1 GTGGGATGATCGCTCGTGCACGACCATGCCAAACACTCGCTCTGCCCAGATCGCCAAGAT 522 consensus_5244#2 -----ATCAAC-CTGGACCAAGGCTTCCNGNGGAACGCGAATTATCAAGGGCCGAAGGCC 486 ** * * ** * ** * * ** ** * ** * * * consensus_5244#0 CGTGGAGTATTTCGAGCGCAAGGGCCAAACATTCAAACCATTCACTGTACCTGATACGCT 886 consensus_5244#1 CGTGGAGTATTTCGAGCGCAAGGGCCAAACATTCAAACCATTCACTGTACCTGATACGCT 582 consensus_5244#2 CTTNGAGGCCCNGGGGTTCCGGGG---AACCTTCCACGGCCTTGCCTTGGTTGGAGGGGA 543 * * *** * * * *** *** *** * * * * ** * consensus_5244#0 ACAGCTGGGCGCATCTGCCTCCGGGGGCCACTG-CGGTGGCGGCGGAACA-GGCAGCTCC 944 consensus_5244#1 ACAGCTGGGCGCATCTGCCTCCGGGGGCCACTGGCGGTGGCGGTGGAACAAGGCAGCTCC 642 consensus_5244#2 ACT-TTGGAT---TCCGGCTCCGGG-----TTGGCCAAACCGAAANTTTAATTTGGCGCA 594 ** *** ** * ******* ** * ** * ** * consensus_5244#0 GTGCATCTGCAGCATCATCATCACCATCACCATCATCATCTACATCACCATCGCCCTAGT 1004 consensus_5244#1 GTGCATCTGCAGCATCATCATCACCATCACCATCATCATCTACATCACC----------- 691 consensus_5244#2 AAGAACGAGCTTCCN--------------------------------------------- 609 * * ** * consensus_5244#0 GCGGCCTATGCAGCGGGAACGAACGCATCGTCCTGTGCTGGGATGGGTGCCACGGCCACG 1064 consensus_5244#1 ------------------------------------------------------------ consensus_5244#2 ------------------------------------------------------------ consensus_5244#0 GGCGGTGCTGCACCAACGGCTTCCACCAATACAGCAACACCAAATGGAGCGGTCGTGGAC 1124 consensus_5244#1 ------------------------------------------------------------ consensus_5244#2 ------------------------------------------------------------ consensus_5244#0 AGTGGGCGACGGCATTCTTCCACTTCCGGGGCCGTAACTTCCGCGGCAGCCAATGCAAAG 1184 consensus_5244#1 ------------------------------------------------------------ consensus_5244#2 ------------------------------------------------------------ consensus_5244#0 CTGTCTCAGGCTGAACTAAAGCAACGCTTCGAGTACGAAGCGTTCTGTCTGGAGCTGGAG 1244 consensus_5244#1 ------------------------------------------------------------ consensus_5244#2 ------------------------------------------------------------ consensus_5244#0 CGAAAGCAGCAAGCTTCCGTCACAGTCCCGAACGCTCCCCAAATACGGTTAAACAACATC 1304 consensus_5244#1 ------------------------------------------------------------ consensus_5244#2 ------------------------------------------------------------ consensus_5244#0 TGCGAGGGTAACGTTCGCTCAAAACTGCAACTGTTCGATAAGCAGAGACAGCAGAGCAAC 1364 consensus_5244#1 ------------------------------------------------------------ consensus_5244#2 ------------------------------------------------------------ consensus_5244#0 GCTGCGGCGGCTG 1377 consensus_5244#1 ------------- consensus_5244#2 ------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||