These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5246#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 979 fasta sequence [TGTTGGTGGTGTTGTACGGTGCCAAAGTTCAGGTCGAACCAAAGTGCGAAGAATTCTGCCTGGGAAACGACGAACAAACGATGCAAAATACAGGGAAGCTCGCCGGAATCACGCTATTCATTACCGGTGCATCCAGGGGCATTGGCAAAGCGATCGCACTGAAAGCCGCTCGTGATGGGGCCAACATAGTGCTGGCAGCCAAAACGGCGGAACCTCATCCGAAGCTGCCCGGAACCATCTAC-ACGGCGGCAGCCGAA-ATTGAAGCAGCAGGCGGAAAAGCCTTGCCTTGCGTCGTGGATGTGCGTAGTGAGGAAGCCGTCCGGGCTGCCGTTCAAAAAGCGGTCCAAACGTTCGGGGGTATCGATATCGTGGTTAACAATGCCAGTGCCATATCGCTGACTCCAACCGAGGAGACTGATATGAAGCGATACGATCTGATGCACAATATCAACACCAGGGGTACTTTCTTGGTATCGAAAGAGTGTTTGCCGTATCTGAGGAAAAGCAAGCATGCTCACATCCTGAACATTTCTCCGCCGCTTAACATGGAGCCACATTGGTTCAGCAACCATGTCGCCTATACCATGGCCAAATATGGGATGTCCATGTGCGTGCTCGGTATGGCGCGGGAGTATGAAAGTGCAAACATTTCGGTGAATGCGTTGTGGCCTCGTACGATCATTTACACCGCTGCTGTTGAGATGCTCCACGGTCAGGAGGGCTATCCATTCTCTCGCAAACCGGAAATAATGGCCGATGCTGCATATGCGATACTTTGCCGACCGGCGGGAGCTAGTACTGGAAACTTTTTTATAGACGACGAGGTGCTGGCCGCGGAAGGTATTACGGATATGGCACAGTACGCTTGTGTGCCGGGTAACGCACTAATTCTCACCCCGGACATCTTCGTGAACGAGAAAAAATCAAAGCTGTAATCAATTTGTTCGGATTGCATTCCAGAGCCTTGGCTGCAGAATAA] [+] EMBL CNS090SF [TGTTGGTGGTGTTGTACGGTGCCAAAGTTCAGGTCGAACCAAAGTGCGAAGAATTCTGCCTGGGAAACGACGAACAAACGATGCAAAATACAGGGAAGCTCGCCGGAATCACGCTATTCATTACCGGTGCATCCAGGGGCATTGGCAAAGCGATCGCACTGAAAGCCGCTCGTGATGGGGCCAACATAGTGCTGGCAGCCAAAACGGCGGAACCTCATCCGAAGCTGCCCGGAACCATCTAC ACGGCGGCAGCGAAATATTGAAGCAGCAGGCGGAAAAGCCTTGCCTTGCGTCGTGGATGTGCGTAGTGAGGAAGCCGTCCGGGCTGCCGTTCAAAAAGCGGTCCAAACGTTCGGGGGTATCGATATCGTGGTTAACAATGCCAGTGCCATATCGCTGACTCCAACCGAGGAGACTGATATGAAGCGATACGATCTGATGCACAATATCAACACCAGGGGTACTTTCTTGGTATCGAAAGAGTGTTTGCCGTATCTGAGGAAAAGCAAGCATGCTCACATCCTGAACATTTCTCCGCCGCTTAACATGGAGCCACATTGGTTCAGCAACCATGTCGCCTATACCATGGCCAAATATGGGATGTCCATGTGCGTGCTCGGTATGGCGCGGGAGTATGAAAGTGCAAACATTTCGGTGAATGCGTTGTGGCCTCGTACGATCATTTACACCGCTGCTGTTGAGATGCTCCACGGTCAGGAGGGCTATCCATTCTCTCGCAAACCGGAAATAATGGCCGATGCTGCATATGCGATACTTTGCCGACCGGCGGGAGCTAGTACTGGAAACTTTTTTATAGACGACGAGGTGCTGGCCGCGGAAGGTATTACGGATATGGCACAGTACGCTTGTGTGCCGGGTAACGCACTAATTCTCACCCCGGACATCTTCGTGAACGAGAAAAAATCAAAGCTGTAATCAATTTGTTCGGATTGCATTCCAGAGCCT ] [-] EMBL CNS090SG [ CGACGAACAAACGATGCAAAATACAGGGAAGCTCGCCGAAATCACGCTATTCATTACCGGTGCATCCAGGGGCATTGGCAAAGCGATCGCACTGAAAGCCGCTCGTGATGGGGCCAACATAGTGGTGGCAGCCAAAACGGCGGAACCTCATCCGAAGCTGCCCGGAACCATCTACAACGGCGGCAGCCGAA ATTGAAGCAGCAGGCGGAAAAGCCTTGCCTTGCGTCGTGGATGTGCGTAGTGAGGAAGCCGTCCGGGCTGCCGTTCAAAAAGCGGTCCAAACGTTCGGGGGTATCGATATCGTGGTTAACAATGCCAGTGCCATATCGCTGACTCCAACCGAGGAGACTGATATGAAGCGATACGATCTGATGCACAATATCAACACCAGGGGTACTTTCTTGGTATCGAAAGAGTGTTTGCCGTATCTGAGGAAAAGCAAGCATGCTCACATCCTGAACATTTCTCCGCCGCTTAACATGGAGCCACATTGGTTCAGCAACCATGTCGCCTATACCATGGCCAAATATGGGATGTCCATGTGCGTGCTCGGTATGGCGCGGGAGTATGAAAGTGCAAACATTTCGGTGAATGCGTTGTGGCCTCGTACGATCATTTACACCGCTGCTGTTGAGATGCTCCACGGTCAGGAGGGCTATCCATTCTCTCGCAAACCGGAAATAATGGCCGATGCTGCATATGCGATACTTTGCCGACCGGCGGGAGCTAGTACTGGAAACTTTTTTATAGACGACGAGGTGCTGGCCGCGGAAGGTATTACGGATATGGCACAGTACGCTTGTGTGCCGGGTAACGCACTAATTCTCACCCCGGACATCTTCGTGAACGAGAAAAAATCAAAGCTGTAATCAATTTGTTCGGATTGCATTCCAGAGCCTTGGCTGCAGAATAA] [+] EMBL BX624729 [ ATACAGGAAAGCTCGCCGGAATCACGCTATTCATTACCGGTGCATCCAGGGGCATCGGCAAAGCGATCGCACTGAAAGCCGCTCGTGATGGGGCCAACATAGTGCTGGCAGCCAAAACGGCGGAACCTCATCCGAAGCTGCCCGGAACCATCTAC ACGGCGGCAGCCGAA ATTGAAGCAGCGGGCGGAAAAGCCTTGCCTTGCGTCGTGGATGTGCGCAGTGAGGAAGCCGTCCGGGCTGCCGTTCAAAAAGCGGTCCAAACGTTCGGGGGTATCGATATCGTGGTTAACAATGCCAGTGCCATATCGCTGACTCCAACCGAGGAGACTGATATGAAGCGATACGATCTGATGCACAATATCAACACCAGGGGTACTTTCTTGGTATCGAAAGAGTGTTTGCCGTATCTGAGGAAAAGCAAGCATGNTCACATCCTGAACATTTCTCCGCCGCTTAACATGGAGCCACATTGGTTCAGCAACCATGTCGCCTATACCATGGCCAAATATGGGATGTCCATGTGCGTGCTCGGTATGGCGCGGGAGTATGCAAGTGCAAACATTTCGGTGAATGCGTTGTGGCCTCGTACGATCATTTACACCGCTGCTGTTGAGATGCTCCACGGACAGGAGGGCTATCCATTCTCTCGCAAACCGGAAATAATGGCCGATGCTGCATATGCGATACTTTGCAGATCGGCGGGAGCTAGTACTGGAAACTTTTTTATAGACGACGAGGTGCTGGNCGCGGAANGTATTACGGATATGGCACAGTACGCTTGTGTGCCGGGTA ] consensusID : consensus_5246#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 661 fasta sequence [GCAGCCAAAACGGCGGAACCTCATCCGAAGCTGCCCGGAACCATCTACACGGCGGCAGCCGAAAGTAAGATTGCTATGACACCCTTTCCTCGGCTAGGAGGGCTTAAGAGCTTAATTGTCTGTTGCGTTTACAGTTGAAGCAGCAGGCGGAAAAGCCTTGCCTTGCGTCGTGGATGTGCGTAGTGAGGAAGCCGTCCGGGCTGCCGTTCAAAAAGCGGTCCAAACGTTCGGGGGTATCGATATCGTGGTTAACAATGCCAGTGCCATATCGCTGACTCCAACCGAGGAGACTGATATGAAGCGATACGATCTGATGCACAATATCAACACCAGGGGTACTTTCTTGGTGTAAGTATGGGAAACCAGAAGCACCAGGGTCCGATCGATCCGCAACGCAGAAATCTTCCTAATAGTAGCGTTCTTCCAGATCGAAAGAGTGTTTGCCGTATCTGAGGAAAAGCAAGCATGCTCACATCCTGAACATTTCTCCGCCGCTTAACATGGAGCCACATTGGTTCAGCAACCATGTCGCCTATACCATGGCCAAATATGGGATGTCCATGTGCGTGCTCGGTATGGCGCGGGAGTATGAAAGTGCAAACATTTCGGTGAATGCGTTGTGGCCTCGTACGATCATTTACACCGCTGCTGTTGAGATGCT] [-] EMBL BX608607 [GCAGCCAAAACGGCGGAACCTCATCCGAAGCTGCCCGGAACCATCTACACGGCGGCAGCCGAAAGTAAGATTGCTATGACACCCTTTCCTCGGCTAGGAGGGCTTAAGAGCTTAATTGTCTGTTGCGTTTACAGTTGAAGCAGCAGGCGGAAAAGCCTTGCCTTGCGTCGTGGATGTGCGTAGTGAGGAAGCCGTCCGGGCTGCCGTTCAAAAAGCGGTCCAAACGTTCGGGGGTATCGATATCGTGGTTAACAATGCCAGTGCCATATCGCTGACTCCAACCGAGGAGACTGATATGAAGCGATACGATCTGATGCACAATATCAACACCAGGGGTACTTTCTTGGTGTAAGTATGGGAAACCAGAAGCACCAGGGTCCGATCGATCCGCAACGCAGAAATCTTCCTAATAGTAGCGTTCTTCCAGATCGAAAGAGTGTTTGCCGTATCTGAGGAAAAGCAAGCATGCTCACATCCTGAACATTTCTCCGCCGCTTAACATGGAGCCACATTGGTTCAGCAACCATGTCGCCTATACCATGGCCAAATATGGGATGTCCATGTGCGTGCTCGGTATGGCGCGGGAGTATGAAAGTGCAAACATTTCGGTGAATGCGTTGTGGCCTCGTACGATCATTTACACCGCTGCTGTTGAGATGCT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_5246#0 TGTTGGTGGTGTTGTACGGTGCCAAAGTTCAGGTCGAACCAAAGTGCGAAGAATTCTGCC 60 consensus_5246#1 ------------------------------------------------------------ consensus_5246#0 TGGGAAACGACGAACAAACGATGCAAAATACAGGGAAGCTCGCCGGAATCACGCTATTCA 120 consensus_5246#1 --------------------------------------GCAGCCAAAACGGCGGAACCTC 22 *** ** ** * consensus_5246#0 TTACCGGTGCATCCAGGGGCATTGGCAAAGCGATCGCACTGAAAGCCGCTCGTGATGGGG 180 consensus_5246#1 ATCCGAAGCTGCCCGGAACCATCTACACGGCGGCAG--CCGAAAGTAA-----GATTGCT 75 * * ** * *** ** *** * * ***** *** * consensus_5246#0 CCAACATAGTGCTGGCAGCCAAAACGGCGGAACCTCATCCGAAGCTGCCCGGAACCATCT 240 consensus_5246#1 ATGACACCCTTTCCTCGGCTAGGAGGGCTTAA---------GAGCTT-----AATTGTCT 121 *** * * ** * * *** ** **** ** *** consensus_5246#0 ACACGGCGGCAGCCGAAATTGAAGCAGCAGGCGGAAAAGCCTTGCCTTGCGTCGTGGATG 300 consensus_5246#1 -----GTTGCGTTTACAGTTGAAGCAGCAGGCGGAAAAGCCTTGCCTTGCGTCGTGGATG 176 * ** * ****************************************** consensus_5246#0 TGCGTAGTGAGGAAGCCGTCCGGGCTGCCGTTCAAAAAGCGGTCCAAACGTTCGGGGGTA 360 consensus_5246#1 TGCGTAGTGAGGAAGCCGTCCGGGCTGCCGTTCAAAAAGCGGTCCAAACGTTCGGGGGTA 236 ************************************************************ consensus_5246#0 TCGATATCGTGGTTAACAATGCCAGTGCCATATCGCTGACTCCAACCGAGGAGACTGATA 420 consensus_5246#1 TCGATATCGTGGTTAACAATGCCAGTGCCATATCGCTGACTCCAACCGAGGAGACTGATA 296 ************************************************************ consensus_5246#0 TGAAGCGATACGATCTGATGCACAATATCAACACCAGGGGTACTTTCTTGGT-------- 472 consensus_5246#1 TGAAGCGATACGATCTGATGCACAATATCAACACCAGGGGTACTTTCTTGGTGTAAGTAT 356 **************************************************** consensus_5246#0 ------------------------------------------------------------ consensus_5246#1 GGGAAACCAGAAGCACCAGGGTCCGATCGATCCGCAACGCAGAAATCTTCCTAATAGTAG 416 consensus_5246#0 -----------ATCGAAAGAGTGTTTGCCGTATCTGAGGAAAAGCAAGCATGCTCACATC 521 consensus_5246#1 CGTTCTTCCAGATCGAAAGAGTGTTTGCCGTATCTGAGGAAAAGCAAGCATGCTCACATC 476 ************************************************* consensus_5246#0 CTGAACATTTCTCCGCCGCTTAACATGGAGCCACATTGGTTCAGCAACCATGTCGCCTAT 581 consensus_5246#1 CTGAACATTTCTCCGCCGCTTAACATGGAGCCACATTGGTTCAGCAACCATGTCGCCTAT 536 ************************************************************ consensus_5246#0 ACCATGGCCAAATATGGGATGTCCATGTGCGTGCTCGGTATGGCGCGGGAGTATGAAAGT 641 consensus_5246#1 ACCATGGCCAAATATGGGATGTCCATGTGCGTGCTCGGTATGGCGCGGGAGTATGAAAGT 596 ************************************************************ consensus_5246#0 GCAAACATTTCGGTGAATGCGTTGTGGCCTCGTACGATCATTTACACCGCTGCTGTTGAG 701 consensus_5246#1 GCAAACATTTCGGTGAATGCGTTGTGGCCTCGTACGATCATTTACACCGCTGCTGTTGAG 656 ************************************************************ consensus_5246#0 ATGCTCCACGGTCAGGAGGGCTATCCATTCTCTCGCAAACCGGAAATAATGGCCGATGCT 761 consensus_5246#1 ATGCT------------------------------------------------------- 661 ***** consensus_5246#0 GCATATGCGATACTTTGCCGACCGGCGGGAGCTAGTACTGGAAACTTTTTTATAGACGAC 821 consensus_5246#1 ------------------------------------------------------------ consensus_5246#0 GAGGTGCTGGCCGCGGAAGGTATTACGGATATGGCACAGTACGCTTGTGTGCCGGGTAAC 881 consensus_5246#1 ------------------------------------------------------------ consensus_5246#0 GCACTAATTCTCACCCCGGACATCTTCGTGAACGAGAAAAAATCAAAGCTGTAATCAATT 941 consensus_5246#1 ------------------------------------------------------------ consensus_5246#0 TGTTCGGATTGCATTCCAGAGCCTTGGCTGCAGAATAA 979 consensus_5246#1 -------------------------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||