These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5250#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 900 fasta sequence [AGCGACGAAGGGCGATCATAAGAAGGTGGACAAGCTAGTGAAAGACATTTACGGCGGCGATTACGAGCGGTTCGGGCTGCCCGGCGAGCTGGTCGCGTCAAGCTTCGGACAGATGCATCTACAGGAAAGGCGGCAAAGCG-TAGCCAAGGAAGATCTGGCCCACGCCATCCTCGTGACGATCACCAACAACATTGGTTCGATCGCACGCATGTGCGCAAGCAATGAGAAGATCGAGAAGGTGGTGTTTGTGGGCAACTTTCTGCGCGTGAACCCAATATCGATGAAGCTGCTCGCGTACGCGATGGACTACTGGTCGAAGGGAACGCTCAAAGCGCTGTTCCTCGAGCACGAGGGTTACTTCGGTGCAGTCGGGTGCCTTTTGCAGTTCAACGGTGAGCTGCACGCACAAGTCGGTGATTTACTTACTTAGACTAGTAGATAGGAAGGTAACGAAACAGTGATGGGAGTGGGGTGACGCGAGAGAAAAAGGGCAATAGGCGCCGGCGGAGATGCCTTTCTCTCGTGTTTGTTTTACTACGCGCTAAATTAGCTTGTTCGTTTTGATCTAGTTCTTGTAAAAAGAGAGAGAGAGAGAGCGCGAGAGAGATCTTCTACACAATTGAGTGATAGCTTTTGAAGCTTCTGAATCGATTCATTTTCATCATCCTAACCTGCAAAAAGATTAGGCAAAATCAGCTCACTCGCTCTCCCGTAAGGGTCTAGGTGTGACCTAACAGCGGAGTAGCCAACAGAAAACAAGGAAAAACACATTCACTCATGCGAAAATTAGTGAAGCGATGAGCAAAAAAAAAACCCCTGCAAACAATCAGCCCCTTTTGCCGTCAGTCCAATCATAGCGTAACGTAATTTAACTTTGCCAAATCATGTCCCCGTATCCCC] [+] EMBL BX623316 [AGCGACGAAGGGCGATCATAAGAAGGTGGACAAGCTAGTGAAAGACATTTACGGCGGCGATTACGAGCGGTTCGGGCTGCCCGGCGAGCTGGTCGCGTCAAGCTTCGGACAGATGCATCTACAGGAAAGGCGGCAAAGCG TAGCCAAGGAAGATCTGGCCCACGCCATCCTCGTGACGATCACCAACAACATTGGTTCGATCGCACGCATGTGCGCAAGCAATGAGAAGATCGAGAAGGTGGTGTTTGTGGGCAACTTTCTGCGCGTGAACCCAATATCGATGAAGCTGCTCGCGTACGCGATGGACTACTGGTCGAAGGGAACGCTCAAAGCGCTGTTCCTCGAGCACGAGGGTTACTTCGGTGCAGTCGGGTGCCTTTTGCAGTTCAACGGTGAGCTGCACGCACAAGTCGGTGATTTACTTACTTAGACTAGTAGATAGGAAGGTAACGAAACAGTGATGGGAGTGGGTTGACGCGAGAGAAAAAGGGCAATAGGCGCCGGCGGAGATGCCTTTCTCTCGTGTTTGTTTTACTACGCGCTAAATTAGCTTGTTCGTTTTGATCTAGTTCTTGTAAAAAGAGAGAGAGAGAGAGCGCGAGAGAGATCTTCTACACAATTGAGTGATAGCTTTTGAAGCTTCTGAATCGATTCATTTTCATCATCCTAACCTGCAAAAAGATTAGGCAAAATCAGCTCACTCGCTCTCCCGTAAGGGTCTAGGTGTGACCTAACAGCGGAGT ] [+] EMBL BM634274 [ ccGGCGATCATAAGAAGGTGGACAAGCTAGTGAAAGACATTTACGGCGGCGATTACGAGCGGTTCGGGCTGCCCGGCGAGCTGGTCGCGTCAAGCTTCGGACAGATGCATCTACAGGAAAGGCGGCAAAGCGTTAG CAAGGAAGATCTGGCCCACGCCATCCTCGTGACGATCACCAACAACATTGGTTCGATCGCACGCATGTGCGCAAGCAATGAGAAGATCGAGAAGGTGGTGTTTGTGGGCAACTTTCTGCGCGTGAACCCAATATCGATGAAGCTGCTCGCGTACGCGATGGACTACTGGTCGAAGGGAACGCTCAAAGCGCTGTTCCTCGAGCACGAGGGTTACTTCGGTGCAGTCGGGTGCCTTTTGCAGTTCAACGGTGAGCTGCACGCACAAGTCGGTGATTTACTTACTTAGACTAGTAGATAGGAAGGTAACGAAACAGTGATGGGAGTGGGGTGACGCGAGAGAAAAAGGGCAATAGGCGCCGGCGGAGATGCCTTTCTCTCGTGTTTGTTTTACTACGCGCTAAATTAGCTTGTTCGTTTTGATCTAGTTCTTGTAAAAAGAGAGAGAGAGAGAGCGCGAGAGAGATCTTCTACACAATTGAGTGATAGCTTTTGAAGCTTCTGAATCGATTCATTTTCATCATCCTAACCTGCAAAAAGAT ] [+] EMBL BX626531 [ CAACTTTCTGCGCGTGAACCCAATATCGATGAAGCTGCTCGCGTACGCGATGGACTACTGGTCGAAGGGAACGCTCAAAGCGCTGTTCCTCGAGCACGAGGGTTACTTCGGTGCAGTCGGGTGCCTTTTGCAGTTCAACGGTGAGCTGCACGCACAAGTCGGTGATTTACTTACTTAGACTAGTAGATAGGAAGGTAACGAAACAGTGATGGGAGTGGGGTGACGCGAGAGAAAAAGGGCAATAGGCGCCGGCGGAGATGCCTTTCTCTCGTGTTTGTTTTACTACGCGCTAAATTAGCTTGTTCGTTTTGATCTAGTTCTTGTAAAAAGAGAGAGAGAGAGAGCGCGAGAGAGATCTTCTACACAATTGAGTGATAGCTTTTGAAGCTTCTGAATCGATTCATTTTCATCATCCTAACCTGCAAAAAGATTAGGCAAAATCAGCTCACTCGCTCTCCCGTAAGGTTCTAGGTGTGACCTAACAGCGGAGTAGCCAACAGAAAACAAGGAAAAACACATTCACTCATGCGAAAATTAGTGAAGCGATGAGCAAAAAAAAAACCCCTGCAAACAATCAGCCCCTTTTGCCGTCAGTCCAATCATAGCGTAACGTAATTTAACTTTGCCAAATCATGTCCCCGTATCCCC] consensusID : consensus_5250#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 429 fasta sequence [GCAGAATCGCACGAGGTTGNTGCAGCTTCGGACAGATGCATCTACAGGAAAGGCGGCAAAGCGTTAGCAAGGAAGATCTGGCCCACGCCATCCTCGTGACGATCACCAACAACATTGGTTCGATCGCACGCATGTGCGCAAGCAATGAGAAGATCGAGAAGGTAGGGTGTGACAAGCAAAAAAGGCTTCTATTGCACATTAACTGCAATGCTGATCCATTTCCAGGTGGTGTNATGTAGGGCAACTTTCTGCGCGTGAACCCAATATCGATGCAAGCTGCTCGCGTACGCGATGGACTACTGGTCGAAGGGAACGCTCAAAGCGCTGTTCCTCGAGCACGAGGGTTACTTCGGTGCAGTCGGGTGCCTTTTGCAGTTCAACGGTGAGCTGCACGCACAAGTCGGTGATTTACTTACTTAGACTAGTAGA] [+] EMBL AL696657 [GCAGAATCGCACGAGGTTGNTGCAGCTTCGGACAGATGCATCTACAGGAAAGGCGGCAAAGCGTTAGCAAGGAAGATCTGGCCCACGCCATCCTCGTGACGATCACCAACAACATTGGTTCGATCGCACGCATGTGCGCAAGCAATGAGAAGATCGAGAAGGTAGGGTGTGACAAGCAAAAAAGGCTTCTATTGCACATTAACTGCAATGCTGATCCATTTCCAGGTGGTGTNATGTAGGGCAACTTTCTGCGCGTGAACCCAATATCGATGCAAGCTGCTCGCGTACGCGATGGACTACTGGTCGAAGGGAACGCTCAAAGCGCTGTTCCTCGAGCACGAGGGTTACTTCGGTGCAGTCGGGTGCCTTTTGCAGTTCAACGGTGAGCTGCACGCACAAGTCGGTGATTTACTTACTTAGACTAGTAGA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_5250#0 AGCGACGAAGGGCGATCATAAGAAGGTGGACAAGCTAGTGAAAGACATTTACGGCGGCGA 60 consensus_5250#1 ------------------------------------------------------------ consensus_5250#0 TTACGAGCGGTTCGGGCTGCCCGGCGAGCTGGTCGCGTCAAGCTTCGGACAGATGCATCT 120 consensus_5250#1 -------------GCAGAATCGCACGAGGTTGNTGC----AGCTTCGGACAGATGCATCT 43 * * **** * * ** ******************** consensus_5250#0 ACAGGAAAGGCGGCAAAGCGTAGCCAAGGAAGATCTGGCCCACGCCATCCTCGTGACGAT 180 consensus_5250#1 ACAGGAAAGGCGGCAAAGCGTTAGCAAGGAAGATCTGGCCCACGCCATCCTCGTGACGAT 103 ********************* ************************************ consensus_5250#0 CACCAACAACATTGGTTCGATCGCACGCATGTGCGCAAGCAATGAGAAGATCGAGAAGGT 240 consensus_5250#1 CACCAACAACATTGGTTCGATCGCACGCATGTGCGCAAGCAATGAGAAGATCGAGAAGGT 163 ************************************************************ consensus_5250#0 ------------------------------------------------------------ consensus_5250#1 AGGGTGTGACAAGCAAAAAAGGCTTCTATTGCACATTAACTGCAATGCTGATCCATTTCC 223 consensus_5250#0 ----GGTGTT-TGT-GGGCAACTTTCTGCGCGTGAACCCAATATCGATG-AAGCTGCTCG 293 consensus_5250#1 AGGTGGTGTNATGTAGGGCAACTTTCTGCGCGTGAACCCAATATCGATGCAAGCTGCTCG 283 ***** *** ********************************** ********** consensus_5250#0 CGTACGCGATGGACTACTGGTCGAAGGGAACGCTCAAAGCGCTGTTCCTCGAGCACGAGG 353 consensus_5250#1 CGTACGCGATGGACTACTGGTCGAAGGGAACGCTCAAAGCGCTGTTCCTCGAGCACGAGG 343 ************************************************************ consensus_5250#0 GTTACTTCGGTGCAGTCGGGTGCCTTTTGCAGTTCAACGGTGAGCTGCACGCACAAGTCG 413 consensus_5250#1 GTTACTTCGGTGCAGTCGGGTGCCTTTTGCAGTTCAACGGTGAGCTGCACGCACAAGTCG 403 ************************************************************ consensus_5250#0 GTGATTTACTTACTTAGACTAGTAGATAGGAAGGTAACGAAACAGTGATGGGAGTGGGGT 473 consensus_5250#1 GTGATTTACTTACTTAGACTAGTAGA---------------------------------- 429 ************************** consensus_5250#0 GACGCGAGAGAAAAAGGGCAATAGGCGCCGGCGGAGATGCCTTTCTCTCGTGTTTGTTTT 533 consensus_5250#1 ------------------------------------------------------------ consensus_5250#0 ACTACGCGCTAAATTAGCTTGTTCGTTTTGATCTAGTTCTTGTAAAAAGAGAGAGAGAGA 593 consensus_5250#1 ------------------------------------------------------------ consensus_5250#0 GAGCGCGAGAGAGATCTTCTACACAATTGAGTGATAGCTTTTGAAGCTTCTGAATCGATT 653 consensus_5250#1 ------------------------------------------------------------ consensus_5250#0 CATTTTCATCATCCTAACCTGCAAAAAGATTAGGCAAAATCAGCTCACTCGCTCTCCCGT 713 consensus_5250#1 ------------------------------------------------------------ consensus_5250#0 AAGGGTCTAGGTGTGACCTAACAGCGGAGTAGCCAACAGAAAACAAGGAAAAACACATTC 773 consensus_5250#1 ------------------------------------------------------------ consensus_5250#0 ACTCATGCGAAAATTAGTGAAGCGATGAGCAAAAAAAAAACCCCTGCAAACAATCAGCCC 833 consensus_5250#1 ------------------------------------------------------------ consensus_5250#0 CTTTTGCCGTCAGTCCAATCATAGCGTAACGTAATTTAACTTTGCCAAATCATGTCCCCG 893 consensus_5250#1 ------------------------------------------------------------ consensus_5250#0 TATCCCC 900 consensus_5250#1 ------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||