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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5252#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1149 fasta sequence
[CCGCAACAAGCAAGAATCGAAGGATCGCGTGATGCGCGAGGTCAAAACACTGGCCCACTGCGAGCATCAGAACATTGTGCGGTACTTCCACGCGTGGATTGAAACGCCACCGCCCGGTTGGCAGGAACGGCACGATCGCGAATGGATCGAACGCAACTGCCTGTCGACTTCGATCGACATTGAAACGCCGACCGACACGTGTCCCCCGTTGCCGGGTGTGGCCGCGTCCGCTACGACGGCATCTTCCTTTGCGGTAGGGATGAAGAATTCGCGCCTGCAAGCGTCATCCATCCAGTCGAACCTGTGGATGCCACAGTTTCCAGCGGCAAATTTTTCCTTCTCGAACGGTATCGGCGACGGGCTGTCGCTGAAGCGGTACGAGCAGAGTGATAGCTGTTCCTTTATCGAGTTTCGGGCCGAGGGTGAACAGGACGGACAACCGGCCCGGGATGACGAAACATCCAGCAGCTCCGAGTCCGAGTCGGAGGACGAAGCGTCGGAAGTGCAGAGCAATGGAAAACATCGATGGAACGATGAGCCGGAAGACGATTCTTTGGACATTGTGTTCAAAGAACCTTC-GGGTAGTGAAGGTATCAGTAGCCGGGTGGCGCAGTCGCCCAGCAACATGCTGTAGCGATTGATGTATCTTCCTCACCCGAAGGACGATCGCATCCCG-CGGCGATGAAGGATGCGCGCAAT-GGGCCCAATGTGGAGCAGCAGCAGCAGCAACAAAAGCCGAACCCATTCCGCAAAACGCACCGTCGACCACTGTCGCTTGATCTCACGAGCACGATGC-GAAGTTCGCGGGACCCGTGCA-CCCTTCCATCGGGGACGGACCAGTCGAAAGCAAGCTCGGCGCAGAGCAACAAAATCTATCTCTACATCCAGATGCAGCTGTGCCACAAGCAGTCGCTCAAGGAGTGGCTCAGCCTAAACGGGTTTCCGGCGCGGCGCGATAAGATTGTGCCAATCTTTGAGCAGATCGTTGCCGGCGTCGAGTACGTCCATCTGAAGGGACTGATCCACCGGGACCTGAAGCCGAGCAACATATTCTTCTCGCTGGACGGAAGGATTAAGATCGGTGATTTCGGGCTCGTGACGGACTCGAGCGATCTGCAGTACGATAGTGAGAACAACATGCCGACGATG]
[+] EMBL BM577519 [CCGCAACAAGCAAGAATCGAAGGATCGCGTGATGCGCGAGGTCAAAACACTGGCCCACTGCGAGCATCAGAACATTGTGCGGTACTTCCACGCGTGGATTGAAACGCCACCGCCCGGTTGGCAGGAACGGCACGATCGCGAATGGATCGAACGCAACTGCCTGTCGACTTCGATCGACATTGAAACGCCGACCGACACGTGTCCCCCGTTGCCGGGTGTGGCCGCGTCCGCTACGACGGCATCTTCCTTTGCGGTAGGGATGAAGAATTCGCGCCTGCAAGCGTCATCCATCCAGTCGAACCTGTGGATGCCACAGTTTCCAGCGGCAAATTTTTCCTTCTCGAACGGTATCGGCGACGGGCTGTCGCTGAAGCGGTACGAGCAGAGTGATAGCTGTTCCTTTATCGAGTTTCGGGCCGAGGGTGAACAGGACGGACAACCGGCCCGGGATGACGAAACATCCAGCAGCTCCGAGTCCGAGTCGGAGGACGAAGCGTCGGAAGTGCAGAGCAATGGAAAACATCGATGGAACGATGAGCCGGAAGACGATTCTTTGGACATTGTGTTCAAAGAACCTTC GGGTAGTGAAGGTATCAGTAGCCGGGTGGCGCAGTCGCCCAGCAACATGCTGTAGCGATTGATGTATCTTCCTCACCCGAAGGACGATCGCATCCCGCCGGCGATGAAGGATGCGCGCAATGGGGCTCCATGTGGAGCAGCA ]
[+] EMBL BM601706 [ ccgGACACGTGTCCCCCGTTGCCGGGTGTGGCCGCGTCCGCTACGACGGCTTCTTCCTTTGCGGTAGGTATGAAAAATTCGCGCCTGCAAGCGTCATCCATCCAGTCGAACCTGTGGATGCCGCAGTTTCCGGCGGCAAACTTTTCCTTCTCGAACGGTATCGGCGACGGGCCTTCGCTGAAGCGGTACGAGCAGAGTGATAGCTGTTCCTTTATCGAGTTTCGGGCCGAGGGTGAACAGGACGGACAACCGGCCCGGGATGACGAAACATCCAGCAGCTCCGAGTCCGAGTCGGACGACGAAGCGTCGGAAGTGCAGAGCAATGGAAAACATCGATGGAACGATGAGCCGGAAGACGATTCTTTGGACATTGTGTTCAAAGAACCTTCGGGGTAGTGAAGGTATCAGTAG CGGGTGGCGCAGTCGCCCAGCAACATGCCGTAGCGATTGATGTATCTTCCTCACCCGAAGGTCGATCGCAACCCG CGGCGATGAAGGATGCGCGCAAT GGGCCCAATGTGGAGCAGCAGCAGCAGCAACAAAAGCCGAACCCATTCCGCAAAACGCACCGTCGACCACTGTCGCTTGATCTCACGAGCACGATGCGGAAGTTCGCGGGACCCGTGCACCCCTTCCATCGGGGACGGACCAGTCGAAAGCAAGCTCGGCGCAGAGCAAC ]
[+] EMBL BX627839 [ CCGGAAGACGATTCTTTGGACATTGTGTTCAAAGAACCTTC GGGTAGTGAAGGTATCAGTAGC GGTGGCGCAGTCGCCCAGCAACATGCTGTAGCGATTGATGTATCTTCCTCACCCGAAGGACGATCGCATCCCG CGGCGATGAAGGATGCGCGCAAT GGGCCCAATGTGGAGCAGCAGCAGCAGCAACAAAAGCCGAACCCATTCCGCAAAACGCACCGTCGACCACTGTCGCTTGATCTCACGAGCACGATGC GAAGTTCGCGGGACCCGTGCA CCCTTCCATCGGGGACGGACCAGTCGAAAGCAAGCTCGGCGCAGAGCAACAAAATCTATCTCTACATCCAGATGCAGCTGTGCCACAAGCAGTCGCTCAAGGAGTGGCTCAGCCTAAACGGGTTTCCGGCGCGGCGCGATAAGATTGTGCCAATCTTTGAGCAGATCGTTGCCGGCGTCGAGTACGTCCATCTGAAGGGACTGATCCACCGGGACCTGAAGCCGAGCAACATATTCTTCTCGCTGGACGGAAGGATTAAGATCGGTGATTTCGGGCTCGTGACGGACTCGAGCGATCTGCAGTACGATAGTGAGAACAACATGCCGACGATG]
consensusID : consensus_5252#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 265 fasta sequence
[TCTAGGCAAGAATTGCNGACGGTTAATCCGCGGCGATGAAGGATGCGCGCAATGGGCCCAATTGTGGAGCAGCAGCAGCAGCAACAAAAGCCGAACCCATTCCGNAAAACGCACCGTCGACCACTGTCGCTTGATCTCACGAGCACGATGCGAAGTTCGCGGGACCCGTTGNCACCCTTCCATCGGGGACGGACCAGTCGAAAGCAAGCTCGGCGCAGAGCAAGCNAAAAGTCTATCTCTACATCCACGATGCAGCTGTGCCACA]
[+] EMBL AL696756 [TCTAGGCAAGAATTGCNGACGGTTAATCCGCGGCGATGAAGGATGCGCGCAATGGGCCCAATTGTGGAGCAGCAGCAGCAGCAACAAAAGCCGAACCCATTCCGNAAAACGCACCGTCGACCACTGTCGCTTGATCTCACGAGCACGATGCGAAGTTCGCGGGACCCGTTGNCACCCTTCCATCGGGGACGGACCAGTCGAAAGCAAGCTCGGCGCAGAGCAAGCNAAAAGTCTATCTCTACATCCACGATGCAGCTGTGCCACA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_5252#0 CCGCAACAAGCAAGAATCGAAGGATCGCGTGATGCGCGAGGTCAAAACACTGGCCCACTG 60
consensus_5252#1 ------------------------------------------------------------
consensus_5252#0 CGAGCATCAGAACATTGTGCGGTACTTCCACGCGTGGATTGAAACGCCACCGCCCGGTTG 120
consensus_5252#1 ------------------------------------------------------------
consensus_5252#0 GCAGGAACGGCACGATCGCGAATGGATCGAACGCAACTGCCTGTCGACTTCGATCGACAT 180
consensus_5252#1 ------------------------------------------------------------
consensus_5252#0 TGAAACGCCGACCGACACGTGTCCCCCGTTGCCGGGTGTGGCCGCGTCCGCTACGACGGC 240
consensus_5252#1 ------------------------------------------------------------
consensus_5252#0 ATCTTCCTTTGCGGTAGGGATGAAGAATTCGCGCCTGCAAGCGTCATCCATCCAGTCGAA 300
consensus_5252#1 ------------------------------------------------------------
consensus_5252#0 CCTGTGGATGCCACAGTTTCCAGCGGCAAATTTTTCCTTCTCGAACGGTATCGGCGACGG 360
consensus_5252#1 ------------------------------------------------------------
consensus_5252#0 GCTGTCGCTGAAGCGGTACGAGCAGAGTGATAGCTGTTCCTTTATCGAGTTTCGGGCCGA 420
consensus_5252#1 ------------------------------------------------------------
consensus_5252#0 GGGTGAACAGGACGGACAACCGGCCCGGGATGACGAAACATCCAGCAGCTCCGAGTCCGA 480
consensus_5252#1 ------------------------------------------------------------
consensus_5252#0 GTCGGAGGACGAAGCGTCGGAAGTGCAGAGCAATGGAAAACATCGATGGAACGATGAGCC 540
consensus_5252#1 ------------------------------------------------------------
consensus_5252#0 GGAAGACGATTCTTTGGACATTGTGTTCAAAGAACCTTCGGGTAGTGAAGGTATCAGTAG 600
consensus_5252#1 ------------------------------------------------------------
consensus_5252#0 CCGGGTGGCGCAGTCGCCCAGCAACATGCTGTAGCGATTGATGTATCTTCCTCACCCGAA 660
consensus_5252#1 ------------------------------------------------TCTAGGCAAGAA 12
** * ***
consensus_5252#0 GGACGATCG--CATCCCGCGGCGATGAAGGATGCGCGCAATGGGCCCAAT-GTGGAGCAG 717
consensus_5252#1 TTGCNGACGGTTAATCCGCGGCGATGAAGGATGCGCGCAATGGGCCCAATTGTGGAGCAG 72
* ** * *********************************** *********
consensus_5252#0 CAGCAGCAGCAACAAAAGCCGAACCCATTCCGCAAAACGCACCGTCGACCACTGTCGCTT 777
consensus_5252#1 CAGCAGCAGCAACAAAAGCCGAACCCATTCCGNAAAACGCACCGTCGACCACTGTCGCTT 132
******************************** ***************************
consensus_5252#0 GATCTCACGAGCACGATGCGAAGTTCGCGGGACCCGT--GCACCCTTCCATCGGGGACGG 835
consensus_5252#1 GATCTCACGAGCACGATGCGAAGTTCGCGGGACCCGTTGNCACCCTTCCATCGGGGACGG 192
************************************* ********************
consensus_5252#0 ACCAGTCGAAAGCAAGCTCGGCGCAGAGCAAC---AAAATCTATCTCTACATCCA-GATG 891
consensus_5252#1 ACCAGTCGAAAGCAAGCTCGGCGCAGAGCAAGCNAAAAGTCTATCTCTACATCCACGATG 252
******************************* *** **************** ****
consensus_5252#0 CAGCTGTGCCACAAGCAGTCGCTCAAGGAGTGGCTCAGCCTAAACGGGTTTCCGGCGCGG 951
consensus_5252#1 CAGCTGTGCCACA----------------------------------------------- 265
*************
consensus_5252#0 CGCGATAAGATTGTGCCAATCTTTGAGCAGATCGTTGCCGGCGTCGAGTACGTCCATCTG 1011
consensus_5252#1 ------------------------------------------------------------
consensus_5252#0 AAGGGACTGATCCACCGGGACCTGAAGCCGAGCAACATATTCTTCTCGCTGGACGGAAGG 1071
consensus_5252#1 ------------------------------------------------------------
consensus_5252#0 ATTAAGATCGGTGATTTCGGGCTCGTGACGGACTCGAGCGATCTGCAGTACGATAGTGAG 1131
consensus_5252#1 ------------------------------------------------------------
consensus_5252#0 AACAACATGCCGACGATG 1149
consensus_5252#1 ------------------
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||