These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5254#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 638 fasta sequence [GCAGAATCGGCACGNGGCGATCACATGGATGGTACGGCGCTGTACGAAGCGGTGGCTTGCCATCTTCATCGCTCAACTGCGAGGACTTTCGCTTTCGTTCGGTAACGTGCTAGCGATCAGTATAACGGCTACGGCTGCCAGTATTGGTGCGGGCGGTATACCCCAAGCAGGTTTGGTAACGCTCGTGATGGTGCTGGACACGGTTGGACTGGCAGCAGAAGACGTTTCTCTCATCATTGCCGTCGACTGGCTTGGTCGATCGATTCCGAACTCTGGTGAACGTGCTTGGCGATAGCTTCGGGGCTGCGATCGTCTACCACTACAGCAAGGGCGAGCTGCAGAACACGAAAAGCCTGGATGGAGGGCTGTCCGGTGCGACACATCTCTCGCAGGACTCAAGCGATCCCGGAGCTGGGATACCACAGCGACACGATACTGGCGAAACGACGATTAGAAGCATCCGATTGTAGATTGAGCTACAAGATCCCGGGTGATATCACAGGAANGAACCGGGCTGANTATGGTGCGTATATTCTATGACTCCTAGATCGCTANTTAATGGCNGCACTTTTCTGCGGATCAATCGCGTNTGCGCAGGGTTCATGAACGGAAGTGGCGGCTGTCGCGGAAATTGGGCA] [+] EMBL BX468377 [GCAGAATCGGCACGNGGCGATCACATGGATGGTACGGCGCTGTACGAAGCGGTGGCTTGCCATCTTCATCGCTCAACTGCGAGGACTTTCGCTTTCGTTCGGTAACGTGCTAGCGATCAGTATAACGGCTACGGCTGCCAGTATTGGTGCGGGCGGTATACCCCAAGCAGGTTTGGTAACGCTCGTGATGGTGCTGGACACGGTTGGACTGGCAGCAGAAGACGTTTCTCTCATCATTGCCGTCGACTGGCTTGGTCGATCGATTCCGAACTCTGGTGAACGTGCTTGGCGATAGCTTCGGGGCTGCGATCGTCTACCACTACAGCAAGGGCGAGCTGCAGAACACGAAAAGCCTGGATGGAGGGCTGTCCGGTGCGACACATCTCTCGCAGGACTCAAGCGATCCCGGAGCTGGGATACCACAGCGACACGATACTGGCGAAACGACGATTAGAAGCATCCGATTGTAGATTGAGCTACAAGATCCCGGGTGATATCACAGGAANGAACCGGGCTGANTATGGTGCGTATATTCTATGACTCCTAGATCGCTANTTAATGGCNGCACTTTTCTGCGGATCAATCGCGTNTGCGCAGGGTTCATGAACGGAAGTGGCGGCTGTCGCGGAAATTGGGCA] consensusID : consensus_5254#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 585 fasta sequence [GCAAGAATCGCGCNCGAGGNTATGCAGTATTGGTGCGGCGGTATA-CCCAGGCAGGTCTGGTAACGCTCGTGATGGTGCTGGACACGGTTGGACTACCAGCAGAAGACGTTTCTCTCATCATTGCCGTCGACTGGCTGCTCGATCGATTCCGAACTCTGGTGAACGTGCTTGGCGATAGCTTCGGAGCTGCGATCGTCTACCACTACAGGCAAGGCCGAGCTGCAGAACACGAAAAGCCTGGATGGAGGGCTGTCCGGTGCGACACATCTCTCGCAGGACTCAAGCGATCCCGAGCTGGCATACCA-ACCGACACGATACTGGGCAAACGACGATAAGAACATCCGATTGTAGCATTGAGCTACAAGATCCGGGTGATATCAAGAAGACCCGGCTGATTGGTGCTATTTTATGACTCCTACTCGCTACTTAATGGCGCACTTTTCTGCGGATCAATCGCGTTTGCGCAGTTTACGAAGGCAAGTGGCGGCTGTCGCGAAATTGGCCATCATGCTCGGCAAACGTACCGCGACCTTTTATCTGATCGAAATCCGTTATTACCCAAGTTGACTGAGTCGACGCAGCTCC] [+] EMBL AL696873 [GCAAGAATCGCGCNCGAGGNTATGCAGTATTGGTGCGGCGGTATA CCCAGGCAGGTCTGGTAACGCTCGTGATGGTGCTGGACACGGTTGGACTACCAGCAGAAGACGTTTCTCTCATCATTGCCGTCGACTGGCTGCTCGATCGATTCCGAACTCTGGTGAACGTGCTTGGCGATAGCTTCGGAGCTGCGATCGTCTACCACTACAGGCAAGGCCGAGCTGCAGAACACGAAAAGCCTGGATGGAGGGCTGTCCGGTGCGACACATCTCTCGCAGGACTCAAGCGATCCCGAGCTGGCATACCA ACCGACACGATACTGGGCAAACGACGATAAGAACATCCGATTGTAGCATTGAGCTACAAGATCCGGGTGATATCAAGAAGACCCGGCTGATTGGTGCTATTTTATGACTCCTACTCGCTACTTAATGGCGCACTTTTCTGCGGATCAATCGCGTTTGCGCAGTTTACGAAGGCAAGTGGCGGCTGTCGCG ] [+] EMBL BX614398 [ gcCGGTATACCCCAGGCAGGTCTGGTAACGCTCGTGATTGTGCTGGACACGGTTGGACTACCAGCAGAAGACGTTTCTCTCATCATTGCCGTCGACTGGCTGCTCGATCGATTCCGAACTCTGGTGAACGTGCTTGGCGATAGCTTCGGAGCTGCGATCGTCTACCACTACA GCAAGGCCGAGCTGCAGAACACGAAAAGCCTGGATGGAGGGCTGTCCGGTGCGACACATCTCTCGCAGGACTCAAGCGATCCCGAGCTGGCATACCACACCGACACGATACT GGCAAACGACGATAAGAACATCCGATTGTAG ATTGAGCTACAAGATCCGGGTGATATCAAGAAGACCCGCCTGATTGGTGCTATTTTATGACTCCTACTCGCTACTTAATGGCGCACTTTTCTGCGGATCAATCGCGTTTGCGCAGTTTACGAAGG AAGTGGCGGCTGTCGCGAAATTGGCCATCATGCTCGGCAAACGTACCGCGACCTTTTATCTGATCGAAATCCGTTATTACCCAAGTTGACTGAGTCGACGCAGCTCC] consensusID : consensus_5254#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 569 fasta sequence [CCGCCCACGCGTCCGGGCTGTCGCGAAATTGGCCATCATGCTCGGCAAACGTACCGCGACCTTTTATCTGATCGAAATCCGTTATTACCCAAGTTGACTGAGTCGACACAGCTCCACAGACACGCATTACGGTTTATTTGTTGTTTTTAAAACTCAATTTTTATACAAAAACGCATTTAGCAGATAAGATAGAAGCGGTAAGACAAATAATAGGCTACAAACCGTGTATCGTAGAGGAACAGCTAGGCTAGGTGAATTGGTATCGTGTGGCGTGTTTTATCGCAAACAATCACGAGCTGTAAAAGCTTGTGTTTTTTTTACCCTATCGTATGAAGTAAATTTCTATTAGTGGCTATATACGACCCCAGGGCAGGGATTAGCGACTCCCGCGAGCTCCATAAACGACGCTTCTCTCCCTCACAAATAGTCCTCCGATAAGATAGATAGATAGATAGCTAAGGGAGTTCCGTTTTGGTGACTATCGGGTTTTGTAAACGGTTTTGAAGTGTTTGTACCCTCCCATCCCCCATCCATAAAACTCGATGACTGAAATACAACTTTGAATTATG] [+] EMBL BM585833 [CCGCCCACGCGTCCGGGCTGTCGCGAAATTGGCCATCATGCTCGGCAAACGTACCGCGACCTTTTATCTGATCGAAATCCGTTATTACCCAAGTTGACTGAGTCGACACAGCTCCACAGACACGCATTACGGTTTATTTGTTGTTTTTAAAACTCAATTTTTATACAAAAACGCATTTAGCAGATAAGATAGAAGCGGTAAGACAAATAATAGGCTACAAACCGTGTATCGTAGAGGAACAGCTAGGCTAGGTGAATTGGTATCGTGTGGCGTGTTTTATCGCAAACAATCACGAGCTGTAAAAGCTTGTGTTTTTTTTACCCTATCGTATGAAGTAAATTTCTATTAGTGGCTATATACGACCCCAGGGCAGGGATTAGCGACTCCCGCGAGCTCCATAAACGACGCTTCTCTCCCTCACAAATAGTCCTCCGATAAGATAGATAGATAGATAGCTAAGGGAGTTCCGTTTTGGTGACTATCGGGTTTTGTAAACGGTTTTGAAGTGTTTGTACCCTCCCATCCCCCATCCATAAAACTCGATGACTGAAATACAACTTTGAATTATG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_5254#0 GCAGAATCGGCACGNGGCGATCACATGGATGGTACGGCGCTGTACGAAGCGGTGGCTTGC 60 consensus_5254#1 ------------------------------------------------------------ consensus_5254#2 ------------------------------------------------------------ consensus_5254#0 CATCTTCATCGCTCAACTGCGAGGACTTTCGCTTTCGTTCGGTAACGTGCTAGCGATCAG 120 consensus_5254#1 -------------------------------------------------------GCAAG 5 consensus_5254#2 --------------------------------------------------------CCGC 4 consensus_5254#0 TATAACGGCTACGGCTGC-CAGTATTGGT----GCGGGCGGTATACCCCAAGCAGGTTTG 175 consensus_5254#1 AATCGCGCNCGAGGNTATGCAGTATTGGT----GCGG-CGGTATACCC-AGGCAGGTCTG 59 consensus_5254#2 CCACGCGTCCGGGCTGTCGCGAAATTGGCCATCATGCTCGGCAAACGTACCGCGACCTTT 64 ** * * ***** * *** * ** ** * consensus_5254#0 GTAACGCTCGTGATGGTGCTGGACACGGTTGGACTGGCAGCAGAAGACGTTTCTCTCAT- 234 consensus_5254#1 GTAACGCTCGTGATGGTGCTGGACACGGTTGGACTACCAGCAGAAGACGTTTCTCTCAT- 118 consensus_5254#2 TATCTGATCGAAATCCGTTATTACCCAAGTTGACTGAGTCGACACAGCTCCACAGACACG 124 * *** ** ** * * **** * * * * ** consensus_5254#0 CATTGCCGTCGACTGGCTTGGTCGATCGATTCCGAACTCTG---GTGAACGTGCTTGGC- 290 consensus_5254#1 CATTGCCGTCGACTGGCT-GCTCGATCGATTCCGAACTCTG---GTGAACGTGCTTGGC- 173 consensus_5254#2 CATTACGGTTTATTTGTT--GTTTTTAAAACTCAATTTTTATACAAAAACGCATTTAGCA 182 **** * ** * * * * * * * * * * * **** ** ** consensus_5254#0 GATAGCTTCGGGGCTGCGATCGTCTACCACTACAG-CAAGGGCGAGCTGCAGAACACGAA 349 consensus_5254#1 GATAGCTTCGGAGCTGCGATCGTCTACCACTACAGGCAAGGCCGAGCTGCAGAACACGAA 233 consensus_5254#2 GATAAGATAGAAGCGGTAA--GACAAATAATAGGCTACAAACCGTG-TATCGTAGAGGAA 239 **** * * ** * * * * * * ** * ** * * * * * *** consensus_5254#0 AAGCCTGGATGGAGGGCT--GTCCGGTGCGACACATCTC-TCGCAGG-ACTCAAGCGATC 405 consensus_5254#1 AAGCCTGGATGGAGGGCT--GTCCGGTGCGACACATCTC-TCGCAGG-ACTCAAGCGATC 289 consensus_5254#2 CAGCTAGGCTAGGTGAATTGGTATCGTGTGGCGTGTTTTATCGCAAACAATCACGAGCTG 299 *** ** * * * * ** *** * * * * ***** * *** * * * consensus_5254#0 CCGGAGCTGGGATACCAC-AGCGACACGATACTGGCGAAACGACGATTAGAAGC---ATC 461 consensus_5254#1 CCG-AGCTGGCATACCA--ACCGACACGATACTGGGCAAACGACGATAAGAA-C---ATC 342 consensus_5254#2 TAAAAGCTTGTGTTTTTTTTACCCTATCGTATGAAGTAAATTTCTATTAGTGGCTATATA 359 **** * * * * ** *** * ** ** * ** consensus_5254#0 CGATTGTAG-ATTGAGCTACAAGATCCCGGGTGATATCACAGGAANGAACCGGGCTGANT 520 consensus_5254#1 CGATTGTAGCATTGAGCTACAAGATCC-GGGTGATATCA----AGAAGACCCGGCTGATT 397 consensus_5254#2 CGACCCCAGGGCAGGGATTAGCGACTCCCGCGAGCTCCATAAACGACGCTTCTCTCCCTC 419 *** ** * * * ** * * ** consensus_5254#0 AT-GGTGCGTATATTCTATGACTCCTAGATCGCTANTTAATGGCNGCACTTTTCTGCGGA 579 consensus_5254#1 ---GGTGC---TATTTTATGACTCCTAC-TCGCTACTTAATGGCG-CACTTTTCTGCGGA 449 consensus_5254#2 ACAAATAGTCCTCCGATAAGATAGATAGATAGATAGCTAAGGGAG-TTCCGTTTTGGTGA 478 * * ** ** ** * * ** *** ** * ** ** ** consensus_5254#0 TCAATCGCGTNTGCGCAGGGTTCATGAACGGAAGTGGCGGCTGTCGCGGAAATTGGGCA- 638 consensus_5254#1 TCAATCGCGTTTGCGCA--GTTTACGAAGGCAAGTGGCGGCTGTCGCG-AAATTGGCCAT 506 consensus_5254#2 CTATCGGGTTTTGTAAACGGTTTTGAAGTGTTTGTA----CCCTCCCATCCCCCATCCAT 534 * * * ** * *** * * ** * ** * ** consensus_5254#0 ------------------------------------------------------------ consensus_5254#1 CATGCTCGGCAAACGTACCGCGACCTTTTATCTGATCGAAATCCGTTATTACCCAAGTTG 566 consensus_5254#2 AAAACTCGATGACTGAAATACAACTTTGAATTATG------------------------- 569 consensus_5254#0 ------------------- consensus_5254#1 ACTGAGTCGACGCAGCTCC 585 consensus_5254#2 ------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||