These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5258#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 1301 fasta sequence [AGGCAAGAATCGCGCACGAGGTTAGATTCACGGTAGTGAAGGAAAGGGAAAGAAAAAAAAANAAACGGTGGGAAAATTGAATGTACAACAGGAAGGACGAATGGGATGTGTGCGCGTTGAAAAGATACAGGGGACAGAAAGAGGAAATGCAGCAGTAACATCGAACGGGGGCTTCCCCAGGACATGGGATTGCTAGTCAAAAGGGTAATCGATAATGATGATGATGATGATGATGTCACTCGCCGTTTTTTGCACCATGAAGAAACAAAGCTGTGTGAAAGCAGTTGTTCACTTAAGCTTCCATTTCCTCCCCTTCTTCTCTGAGAGTTTGGCGGTTCTGCGTTCGGCCAGCAACCGAGAAGCTGATGGTTGTTTAGACACATTTAATTAACTTATTTATATTCATTTGTGCGTGTTTGCGTTCGTTCGGTTTTTGTTCGTTTTTAAGCATCACCAGAGTGGCAGTTCGCGCCGATGACTGGTATCGTTAAGTTAAAAAGTGCTTTTGATTTTTATATTCTTCGTTCCTTATTCCTTATTTGAAGTAGTGTTTTGCCACAAATTTAAAAGTACACACACACACACACATCCTATTGAATGTTATTTAATACACATACATTTCAATTTATTGTCACTTGTTCCATGATGTTTGCGGTTTAGTTTTGCCATTTGTTTGGTGTTATTTTTTGCATACACAAATAGAGAGATGAAGTGCACGACTCGAGATTTCCTTCAGTCTCAGATAATGTTTAGAAATGTTTACTTTTTTCTTCCTTTCCCCGGTAAAGGTGAAACGGATGCTAAGGTGCTAGTCGCAAACTTGCAAATTGAACGTATGGCGTGTATGTACATCAATGTGCTAGAGAATGTCCAATGTTAGTTTTGCTAGATAATACACTATTGCTTTTGTTTTCNTTTCTGTTTCAAATTAATTTTTTTTTATCAATACTTTGCCGAATCTTACACTANCTGCTTGGTGTGTTTCTGTGTTCAAGATAACTTAAACAGAATTTGTTAAAGAAATCCACACGCAATTTAATTTAATGTCATAGTTTAATTTTAATCGCACGCGTTTGAGTTCGTTTGTATAATTTTGAATCGATTATTTAAGCGAAATTGTATCGAAATCGAGTTGCTTCACAAGAGNTGTTGGTGCGTAAAAAATGTTTCGATGTAAAACNATCAGGTGTGGAGAGATAGAAAAANAATACGTGACACGTGAACCGTGCGCAAAGCAATGTAAAGTGAAANGAAAGAATGTACCAAATATGGAAACAAGATTGTATTCAAAATATTATTTA] [+] EMBL AL696992 [AGGCAAGAATCGCGCACGAGGTTAGATTCACGGTAGTGAAGGAAAGGGAAAGAAAAAAAAANAAACGGTGGGAAAATTGAATGTACAACAGGAAGGACGAATGGGATGTGTGCGCGTTGAAAAGATACAGGGGACAGAAAGAGGAAATGCAGCAGTAACATCGAACGGGGGCTTCCCCAGGACATGGGATTGCTAGTCAAAAGGGTAATCGATAATGATGATGATGATGATGATGTCACTCGCCGTTTTTTGCACCATGAAGAAACAAAGCTGTGTGAAAGCAGTTGTTCACTTAAGCTTCCATTTCCTCCCCTTCTTCTCTGAGAGTTTGGCGGTTCTGCGTTCGGCCAGCAACCGAGAAGCTGATGGTTGTTTAGACACATTTAATTAACTTATTTATATTCATTTGTGCGTGTTTGCGTTCGTTCGGTTTTTGTTCGTTTTTAAGCATCACCAGAGTGGCAGTTCGCGCCGATGACTGGTATCGTTAAGTTAAAAAGTGCTTTTGATTTTTATA ] [+] EMBL BM632382 [ ccgGGGTAATCGATAATGATGATGATGATGATGATGTCACTCGCCGTTTTTTGCACCATGAAGAAACAAAGCTGTGTGAAAGCAGTTGTTCACTTAAGCTTCCATTTCCTCCCCTTCTTCTCTGAGAGTTTGGCGGTTCTGCGTTCGGCCAGCAACCGAGAAGCTGATGGTTGTTTAGACACATTTAATTAACTTATTTATATTCATTTGTGCGTGTTTGCGTTCGTTCGGTTTTTGTTCGTTTTTAAGCATCACCAGAGTGGCAGTTCGCGCCGATGACTGGTATCGTTAAGTTAAAAAGTGCTTTTGATTTTTATATTCTTCGTTCCTTATTCCTTATTTGAAGTAGTGTTTTGCCACAAATTTAAAAGTACACACACACACACACATCCTATTGAATGTTATTTAATACACATACATTTCAATTTATTGTCACTTGTTCCATGATGTTTGCGGTTTAGTTTTGCCATTTGTTTGGTGTTATTTTTTGCATACACAAATAGAGAGATGAAGTGCACGACTCGAGATTTCCTTCAGTCTCAGATAATGTTTAGAAATGTTTACTTTTTTCTTCCTTTCCCCGGTAAAGGTGAAACGGATGCTAAGGTGCTAGTCGCAAACTTGCAAATTGAACGTATGGCGTGTATGTACATCAATGTGCTAGAGAATGTCCAATGT ] [+] EMBL BX626219 [ TTTACTTTTCTCTTCCTTTCCCCGGTAAAGGTGAAACGGATGCTGAGGTGCTAGTCGCAAACTTGCAAATTGAACGTATGGCGTGNATGTACATCANTGTGCTAAAGAATGTCCAATGTTAGTTTTGCTAGATAATACACTATTGCTTTTGTTTTCNTTTCTGTTTCAAATTAATTTTTTTTTATCAATACTTTGCCGAATCTTACACTANCTGCTTGGTGTGTTTCTGTGTTCAAGATAACTTAAACAGAATTTGTTAAAGAAATCCACACGCAATTTAATTTAATGTCATAGTTTAATTTTAATCGCACGCGTTTGAGTTCGTTTGTATAATTTTGAATCGATTATTTAAGCGAAATTGTATCGAAATCGAGTTGCTTCACAAGAGNTGTTGGTGCGTAAAAAATGTTTCGATGTAAAACNATCAGGTGTGGAGAGATAGAAAAANAATACGTGACACGTGAACCGTGCGCAAAGCAATGTAAAGTGAAANGAAAGAATGTACCAAATATGGAAACAAGATTGTATTCAAAATATTATTTA] consensusID : consensus_5258#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 489 fasta sequence [CCGCGGACGCGTGGGCAAATTTAAAAGTACACACACACACACATCCTATTGAATGTTATTTAATACACATACATTTCAATTATTGTCACTTGTTCCATGATGTTTGCGGTTTAGTTTTGCCATTTGTTTGGTGTTATTTTTTGCATACACCAATAGAGAGATGAAGTGCACGACTCGAGATTTCCTTCAGTCTCAGATAATGTTTAGAAATGTTTACTTTTTTCTTCCTTTCCCCGGTAACGGTGAAACGGATGCTGAGGTGCTAGTCGCAAACTTGCAAATTGAACGTATGGCGTGTATGTACATCAATGTGCTAGAGAATGTCCAATGTTAGTTTTGCTAGATAATACACTATTGCTTTTGTTTTCGTTTCTTTTTCAAATTAATTTTATTTAAATCAATACTTTGCCGAATCTTACATTAGCTGCTTGGTGTGTTTCTGTGTTCAAGATAGCTTAAACAGAATTTGTTAAAGAAATCCACACGCAA] [+] EMBL BM632078 [CCGCGGACGCGTGGGCAAATTTAAAAGTACACACACACACACATCCTATTGAATGTTATTTAATACACATACATTTCAATTATTGTCACTTGTTCCATGATGTTTGCGGTTTAGTTTTGCCATTTGTTTGGTGTTATTTTTTGCATACACCAATAGAGAGATGAAGTGCACGACTCGAGATTTCCTTCAGTCTCAGATAATGTTTAGAAATGTTTACTTTTTTCTTCCTTTCCCCGGTAACGGTGAAACGGATGCTGAGGTGCTAGTCGCAAACTTGCAAATTGAACGTATGGCGTGTATGTACATCAATGTGCTAGAGAATGTCCAATGTTAGTTTTGCTAGATAATACACTATTGCTTTTGTTTTCGTTTCTTTTTCAAATTAATTTTATTTAAATCAATACTTTGCCGAATCTTACATTAGCTGCTTGGTGTGTTTCTGTGTTCAAGATAGCTTAAACAGAATTTGTTAAAGAAATCCACACGCAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_5258#0 AGGCAAGAATCGCGCACGAGGTTAGATTCACGGTAGTGAAGGAAAGGGAAAGAAAAAAAA 60 consensus_5258#1 ------------------------------------------------------------ consensus_5258#0 ANAAACGGTGGGAAAATTGAATGTACAACAGGAAGGACGAATGGGATGTGTGCGCGTTGA 120 consensus_5258#1 ------------------------------------------------------------ consensus_5258#0 AAAGATACAGGGGACAGAAAGAGGAAATGCAGCAGTAACATCGAACGGGGGCTTCCCCAG 180 consensus_5258#1 ------------------------------------------------------------ consensus_5258#0 GACATGGGATTGCTAGTCAAAAGGGTAATCGATAATGATGATGATGATGATGATGTCACT 240 consensus_5258#1 ------------------------------------------------------------ consensus_5258#0 CGCCGTTTTTTGCACCATGAAGAAACAAAGCTGTGTGAAAGCAGTTGTTCACTTAAGCTT 300 consensus_5258#1 ------------------------------------------------------------ consensus_5258#0 CCATTTCCTCCCCTTCTTCTCTGAGAGTTTGGCGGTTCTGCGTTCGGCCAGCAACCGAGA 360 consensus_5258#1 ------------------------------------------------------------ consensus_5258#0 AGCTGATGGTTGTTTAGACACATTTAATTAACTTATTTATATTCATTTGTGCGTGTTTGC 420 consensus_5258#1 ------------------------------------------------------------ consensus_5258#0 GTTCGTTCGGTTTTTGTTCGTTTTTAAGCATCACCAGAGTGGCAGTTCGCGCCGATGACT 480 consensus_5258#1 ------------------------------------------------------------ consensus_5258#0 GGTATCGTTAAGTTAAAAAGTGCTTTTGATTTTTATATTCTTCGTTCCTTATTCCTTATT 540 consensus_5258#1 -----------------------------------------------------------C 1 consensus_5258#0 TGAAGTAGTGTTTTGCCACAAATTTAAAAGTACACACACACACACACATCCTATTGAATG 600 consensus_5258#1 CGCGGACGCGTGG----GCAAATTTAAAAGTACACACACACACACA--TCCTATTGAATG 55 * * * ** **************************** ************ consensus_5258#0 TTATTTAATACACATACATTTCAATTTATTGTCACTTGTTCCATGATGTTTGCGGTTTAG 660 consensus_5258#1 TTATTTAATACACATACATTTCAATT-ATTGTCACTTGTTCCATGATGTTTGCGGTTTAG 114 ************************** ********************************* consensus_5258#0 TTTTGCCATTTGTTTGGTGTTATTTTTTGCATACACAAATAGAGAGATGAAGTGCACGAC 720 consensus_5258#1 TTTTGCCATTTGTTTGGTGTTATTTTTTGCATACACCAATAGAGAGATGAAGTGCACGAC 174 ************************************ *********************** consensus_5258#0 TCGAGATTTCCTTCAGTCTCAGATAATGTTTAGAAATGTTTACTTTTTTCTTCCTTTCCC 780 consensus_5258#1 TCGAGATTTCCTTCAGTCTCAGATAATGTTTAGAAATGTTTACTTTTTTCTTCCTTTCCC 234 ************************************************************ consensus_5258#0 CGGTAAAGGTGAAACGGATGCTAAGGTGCTAGTCGCAAACTTGCAAATTGAACGTATGGC 840 consensus_5258#1 CGGTAACGGTGAAACGGATGCTGAGGTGCTAGTCGCAAACTTGCAAATTGAACGTATGGC 294 ****** *************** ************************************* consensus_5258#0 GTGTATGTACATCAATGTGCTAGAGAATGTCCAATGTTAGTTTTGCTAGATAATACACTA 900 consensus_5258#1 GTGTATGTACATCAATGTGCTAGAGAATGTCCAATGTTAGTTTTGCTAGATAATACACTA 354 ************************************************************ consensus_5258#0 TTGCTTTTGTTTTCNTTTCTGTTTCAAATTAATTTTTTTTTA-TCAATACTTTGCCGAAT 959 consensus_5258#1 TTGCTTTTGTTTTCGTTTCTTTTTCAAATTAATTTTATTTAAATCAATACTTTGCCGAAT 414 ************** ***** *************** *** * ***************** consensus_5258#0 CTTACACTANCTGCTTGGTGTGTTTCTGTGTTCAAGATAACTTAAACAGAATTTGTTAAA 1019 consensus_5258#1 CTTACATTAGCTGCTTGGTGTGTTTCTGTGTTCAAGATAGCTTAAACAGAATTTGTTAAA 474 ****** ** ***************************** ******************** consensus_5258#0 GAAATCCACACGCAATTTAATTTAATGTCATAGTTTAATTTTAATCGCACGCGTTTGAGT 1079 consensus_5258#1 GAAATCCACACGCAA--------------------------------------------- 489 *************** consensus_5258#0 TCGTTTGTATAATTTTGAATCGATTATTTAAGCGAAATTGTATCGAAATCGAGTTGCTTC 1139 consensus_5258#1 ------------------------------------------------------------ consensus_5258#0 ACAAGAGNTGTTGGTGCGTAAAAAATGTTTCGATGTAAAACNATCAGGTGTGGAGAGATA 1199 consensus_5258#1 ------------------------------------------------------------ consensus_5258#0 GAAAAANAATACGTGACACGTGAACCGTGCGCAAAGCAATGTAAAGTGAAANGAAAGAAT 1259 consensus_5258#1 ------------------------------------------------------------ consensus_5258#0 GTACCAAATATGGAAACAAGATTGTATTCAAAATATTATTTA 1301 consensus_5258#1 ------------------------------------------ |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||