These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_5261#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 726 fasta sequence [AGATCGCCNGAGGTNAAAGTCATTACCATAAACAACAGCTATATGGAGTGTTGTAACCGTGCACACAGACACACACGCTATATGTATCCCTGTCTCGTCCCAGCAAAGTATGTATGA--TGTGTGTGTGTGTTGAACAAAAGATCGGTGTTAATCCAACACCTACAAGCAGTGGTGTAGAAGCGTGTTGTGAAGTTAGCAAACAACGAGGACCCAATTAAGCTTGAACTAAGGTGGATGGGGGCGAACTCAGGGGAGCGCTCTCCCTGGACGATACGTAGTGACGCTTCGGTGCGTTTATTTTTCGATTTGCGCAATTTTTTTGCACATTTTACTGAACTCAAAAACGTAGCGCTGCAGCTGCAAAAGGACGGTCGTATAGGTCAAATATATAGAAATGTCAAACAAAGAGGAGAACACTATTATAATAGCAAAGCAACAGCAAACACAAGTAAAGAGCGATCAAAAACCATTT-AAAAAAAGCGGTAGGATAAATTGAATTACATATAAACACAAGCACGAAGTAAACGAACTCTAACTTATCGAGGAAATTTATAATAGACACACTTNCGAACACTTCGAAACCAAAGGCGAAAACCATGCGAACAAAAAGCACCACGTATATGAACCACGCAAATTGTCATTTGCGATAACTACACAAGCCACGTACCACATGAACGCGTACACACAGCGGGANAAGTCTTTGAACTTATGAAGCAAAATTACCTA] [+] EMBL AL697056 [AGATCGCCNGAGGTNAAAGTCATTACCATAAACAACAGCTATATGGAGTGTTGTAACCGTGCACACAGACACACACGCTATATGTATCCCTGTCTCGTCCCAGCAAAGTATGTATGA TGTGTGTGTGTGTTGAACAAAAGATCGGTGTTAATCCAACACCTACAAGCAGTGGTGTAGAAGCGTGTTGTGAAGTTAGCAAACAACGAGGACCCAATTAAGCTTGAACTAAGGTGGATGGGGGCGAACTCAGGGGAGCGCTCTCCCTGGACGATACGTAGTGACGCTTCGGTGCGTTTATTTTTCGATTTGCGCAATTTTTTTGCACATTTTACTGAACTCAAAAACGTAGCGCTGCAGCTGCAAAAGGACGGTCGTATAGGTCAAATATATAGAAATGTCAAACAAAGAGGAGAACACTATTATAATAGCAAAGCAACAGCAAACACAAGTAAAGAGCGATCAAAAACCATTT AAAAAAAGCGGTAGGATAAATTGAATTACATATAAACACAAGCACGAAGTAAACGAACTCTAACTTATCGAGGAAATTTATAATAGACACACTTNCGAACACTTCGAAACCAAAGGCGAAAACCATGCGAACAAAAAGCACCACGTATATGAACCACGCAAATTGTCATTTGCGATAACTACACAAGCCACGTACCACATGAACGCGTACACACAGCGGGAN ] [+] EMBL BX611463 [ CGTCCCAGCAAAGTATGTATGATGTGTGTGTGTGTGTTAAACAAAAGATCGGTGTTAATCCAACACCTACAAGCAGTGGTGTAGAAGCGTGTTGTGAAGTTAGTAAACAACGAGGACCCAATTAAGCTTGAACTAAGGTGGATGGGGGCGAACTCA GGGAGCGCTCTCCCTGGACGATATGTAGTGACGCTTCGGTGCGTTTATTTTTCGATTTGCGCAATTTTTTTGCACATTTTACTGAACTCAAAAACGTAGCGCTGCAGCTGCAAAAGGACGATCGTATAGGTCAAATATATAGAAATGTCAAACAAA AAGAGAACACTATTATAATAGCAAAGCAACAGCAAACACAAGTAAAGAGCGAT AAAAACCATTTAAAAAAAAGCGGTAGGATAAATTGAATTACATATAAACACAAGCACGAAGTAAACGAACTCTAA TTATCGAG AA TTATAATAGA A ATTT GAA A TT GAAA CAAAGGC AAAA CATGCAAAC AAAACCACCA ATATATTAA CACG AATTGTAATTTGCGATAACTACACAACCCACGTA CACATGAACGCGT ACACAGCGGAAGAAGTCTTTGAACTTATGAAGCAAAATTACCTA] consensusID : consensus_5261#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 612 fasta sequence [CCGAGCGGATCATTAAAAAAACACGAAACTATATGCTTTGTGATGCAGTGGCTCAAGAAACGATTATTTAAGCGATCTAGATGAAGAAAGCATACAAAAGTCATTACACCTTAAACAACAGTATATGGAGTGTTGTAACCGTGCACACAGACACACACGCTATATGTATCCCTGTCGCGTCCCAGCAAAGTATGTATGATGTGTGTGTGTGTGTTAAACAAAAGATCGGTGTTAATCCAACACCTACAAGCAGTGGTGTAGAAGCGTGTTGTGAAGTTAGTAAACAACGAGGACCCAATTAAGCTTGAACTAAGGTGGATGGGGGCGAACTCAGGGAGCGCTCTCCCTGGACGATATGTAGTGACGCTTCGGTGCGTTTATTTTTCGATTTGCGCAATTTTTTTGCACATTTTACTGAACTCAAAAACGTAGCGCTGCAGCTGCAAAAGGACGATCGTATAGGTCAAATATATAGAAATGTCAAACAAAAAGAGAACACTATTATAATAGCAAAGCAACAGCAAACACAAGTAAAGAGCGATAAAAACCATTTAAAAAAAAGCGGTAGGATAAATTGAATTACATATAAACACAAGCACGAAGTAAACGAAC] [+] EMBL BM579721 [CCGAGCGGATCATTAAAAAAACACGAAACTATATGCTTTGTGATGCAGTGGCTCAAGAAACGATTATTTAAGCGATCTAGATGAAGAAAGCATACAAAAGTCATTACACCTTAAACAACAGTATATGGAGTGTTGTAACCGTGCACACAGACACACACGCTATATGTATCCCTGTCGCGTCCCAGCAAAGTATGTATGATGTGTGTGTGTGTGTTAAACAAAAGATCGGTGTTAATCCAACACCTACAAGCAGTGGTGTAGAAGCGTGTTGTGAAGTTAGTAAACAACGAGGACCCAATTAAGCTTGAACTAAGGTGGATGGGGGCGAACTCAGGGAGCGCTCTCCCTGGACGATATGTAGTGACGCTTCGGTGCGTTTATTTTTCGATTTGCGCAATTTTTTTGCACATTTTACTGAACTCAAAAACGTAGCGCTGCAGCTGCAAAAGGACGATCGTATAGGTCAAATATATAGAAATGTCAAACAAAAAGAGAACACTATTATAATAGCAAAGCAACAGCAAACACAAGTAAAGAGCGATAAAAACCATTTAAAAAAAAGCGGTAGGATAAATTGAATTACATATAAACACAAGCACGAAGTAAACGAAC] consensusID : consensus_5261#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 608 fasta sequence [CGCCCCGAGGTTCGATCTAGATGAAGAAAGCATACAAAAGTCATTACACCTTAAACAACAGTATATGGAGTGTTGTAACCGTGCACACAGACACACACGCTATATGTATCCCTGTCTCGTCCCAGCAAAGTATGTATGATGTGTGTGTGTGTTAAACAAAAGATCGGTGTTAATCCAACACCTACAAGCAGTGGTGTAGAAGCGTGTTGTGAAGTTAGTAAACAACGAGGACCCAATTAAGCTTGAACTAAGGTGGATGGGGGCGAACTCAGGGAGCGCTCTCCCTGGACGATACGTAGTGACGCTTCGGTGCGTTTATTTTTCGATTTGCGCAATTTTTTTGCACATTTTACTGAACTCAAAAACGTAGCGCTGCAGCTGCAAAAGGACGGTCGTATAGGTCAAATATATAGAAATGTCAAACAAAAAGAGAACACTATTATAATAGCAAAGCAACAGCAAACACAAGTAAAGAGCGATAAAAACCATTTAAAAAAAGCGGTAGGATAAATTGAATTACATATAAACACAAGCACGAAGTAAACGAACTCTAATTATCGANAATTATAATAGAAACTTTCGCNNACTTGAAACAAAGGCAAAACATG] [+] EMBL AL930809 [CGCCCCGAGGTTCGATCTAGATGAAGAAAGCATACAAAAGTCATTACACCTTAAACAACAGTATATGGAGTGTTGTAACCGTGCACACAGACACACACGCTATATGTATCCCTGTCTCGTCCCAGCAAAGTATGTATGATGTGTGTGTGTGTTAAACAAAAGATCGGTGTTAATCCAACACCTACAAGCAGTGGTGTAGAAGCGTGTTGTGAAGTTAGTAAACAACGAGGACCCAATTAAGCTTGAACTAAGGTGGATGGGGGCGAACTCAGGGAGCGCTCTCCCTGGACGATACGTAGTGACGCTTCGGTGCGTTTATTTTTCGATTTGCGCAATTTTTTTGCACATTTTACTGAACTCAAAAACGTAGCGCTGCAGCTGCAAAAGGACGGTCGTATAGGTCAAATATATAGAAATGTCAAACAAAAAGAGAACACTATTATAATAGCAAAGCAACAGCAAACACAAGTAAAGAGCGATAAAAACCATTTAAAAAAAGCGGTAGGATAAATTGAATTACATATAAACACAAGCACGAAGTAAACGAACTCTAATTATCGANAATTATAATAGAAACTTTCGCNNACTTGAAACAAAGGCAAAACATG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_5261#0 ------------------------------------------------------------ consensus_5261#2 ------------------------------------------------------------ consensus_5261#1 CCGAGCGGATCATTAAAAAAACACGAAACTATATGCTTTGTGATGCAGTGGCTCAAGAAA 60 consensus_5261#0 ------------------AGATCGCCNGAG---GTNAAAGTCATTAC--CATAAACAACA 37 consensus_5261#2 CGCCCCGAGGTTCGATCTAGATGAAGAAAGCATACAAAAGTCATTACACCTTAAACAACA 60 consensus_5261#1 CGATTATTTAAGCGATCTAGATGAAGAAAGCATACAAAAGTCATTACACCTTAAACAACA 120 **** ** *********** * ********* consensus_5261#0 GCTATATGGAGTGTTGTAACCGTGCACACAGACACACACGCTATATGTATCCCTGTCTCG 97 consensus_5261#2 G-TATATGGAGTGTTGTAACCGTGCACACAGACACACACGCTATATGTATCCCTGTCTCG 119 consensus_5261#1 G-TATATGGAGTGTTGTAACCGTGCACACAGACACACACGCTATATGTATCCCTGTCGCG 179 * ******************************************************* ** consensus_5261#0 TCCCAGCAAAGTATGTATGATGTGTGTGTGTGT--TGAACAAAAGATCGGTGTTAATCCA 155 consensus_5261#2 TCCCAGCAAAGTATGTATGATGTGTGTGTGTGT--TAAACAAAAGATCGGTGTTAATCCA 177 consensus_5261#1 TCCCAGCAAAGTATGTATGATGTGTGTGTGTGTGTTAAACAAAAGATCGGTGTTAATCCA 239 ********************************* * *********************** consensus_5261#0 ACACCTACAAGCAGTGGTGTAGAAGCGTGTTGTGAAGTTAGCAAACAACGAGGACCCAAT 215 consensus_5261#2 ACACCTACAAGCAGTGGTGTAGAAGCGTGTTGTGAAGTTAGTAAACAACGAGGACCCAAT 237 consensus_5261#1 ACACCTACAAGCAGTGGTGTAGAAGCGTGTTGTGAAGTTAGTAAACAACGAGGACCCAAT 299 ***************************************** ****************** consensus_5261#0 TAAGCTTGAACTAAGGTGGATGGGGGCGAACTCAGGGGAGCGCTCTCCCTGGACGATACG 275 consensus_5261#2 TAAGCTTGAACTAAGGTGGATGGGGGCGAACTCAGGG-AGCGCTCTCCCTGGACGATACG 296 consensus_5261#1 TAAGCTTGAACTAAGGTGGATGGGGGCGAACTCAGGG-AGCGCTCTCCCTGGACGATATG 358 ************************************* ******************** * consensus_5261#0 TAGTGACGCTTCGGTGCGTTTATTTTTCGATTTGCGCAATTTTTTTGCACATTTTACTGA 335 consensus_5261#2 TAGTGACGCTTCGGTGCGTTTATTTTTCGATTTGCGCAATTTTTTTGCACATTTTACTGA 356 consensus_5261#1 TAGTGACGCTTCGGTGCGTTTATTTTTCGATTTGCGCAATTTTTTTGCACATTTTACTGA 418 ************************************************************ consensus_5261#0 ACTCAAAAACGTAGCGCTGCAGCTGCAAAAGGACGGTCGTATAGGTCAAATATATAGAAA 395 consensus_5261#2 ACTCAAAAACGTAGCGCTGCAGCTGCAAAAGGACGGTCGTATAGGTCAAATATATAGAAA 416 consensus_5261#1 ACTCAAAAACGTAGCGCTGCAGCTGCAAAAGGACGATCGTATAGGTCAAATATATAGAAA 478 *********************************** ************************ consensus_5261#0 TGTCAAACAAAGAGGAGAACACTATTATAATAGCAAAGCAACAGCAAACACAAGTAAAGA 455 consensus_5261#2 TGTCAAACAAAAAG-AGAACACTATTATAATAGCAAAGCAACAGCAAACACAAGTAAAGA 475 consensus_5261#1 TGTCAAACAAAAAG-AGAACACTATTATAATAGCAAAGCAACAGCAAACACAAGTAAAGA 537 *********** ** ********************************************* consensus_5261#0 GCGATCAAAAACCATTTAAAAAAA-GCGGTAGGATAAATTGAATTACATATAAACACAAG 514 consensus_5261#2 GCGAT-AAAAACCATTTAAAAAAA-GCGGTAGGATAAATTGAATTACATATAAACACAAG 533 consensus_5261#1 GCGAT-AAAAACCATTTAAAAAAAAGCGGTAGGATAAATTGAATTACATATAAACACAAG 596 ***** ****************** *********************************** consensus_5261#0 CACGAAGTAAACGAACTCTAACTTATCGAGGAAATTTATAATAGACACACTTNCGAACAC 574 consensus_5261#2 CACGAAGTAAACGAACTCTAA-TTATCGANAA---TTATAATAGAAA--CTTTCGCNNAC 587 consensus_5261#1 CACGAAGTAAACGAAC-------------------------------------------- 612 **************** consensus_5261#0 TTCGAAACCAAAGGCGAAAACCATGCGAACAAAAAGCACCACGTATATGAACCACGCAAA 634 consensus_5261#2 TTGAAA--CAAAGGCAAAA--CATG----------------------------------- 608 consensus_5261#1 ------------------------------------------------------------ consensus_5261#0 TTGTCATTTGCGATAACTACACAAGCCACGTACCACATGAACGCGTACACACAGCGGGAN 694 consensus_5261#2 ------------------------------------------------------------ consensus_5261#1 ------------------------------------------------------------ consensus_5261#0 AAGTCTTTGAACTTATGAAGCAAAATTACCTA 726 consensus_5261#2 -------------------------------- consensus_5261#1 -------------------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||