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Anopheles gambiae
cluster # 5263 cluster # 5263       Sequences # 4       consensus # 2


see consensus multiple alignment with clustalw

Direct access to contigs :
consensus_5263#0 length = 1264 sequences # 3  
consensus_5263#1 length = 307 sequences # 1  

consensusID : consensus_5263#0
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 3
consensus length = 1264
fasta sequence
                              [CAGATCGCAGAGGTAATGCTCCAGCAGATCACTACGAAGTGGGACGGNCGGTACGGGCCAACCGTACATAACCTACCCGCAGCTAATGTTTCAGCCGAAGATGTTCTTCGCCCTCGGCTCACCGATCGGTATGTTCGTGACGATACGCGGCATCGATGCGCTGGGCCTGGACTTTAAGCTGCCGACGTGCGACGGGTTCTTTAACATATTCCACCCGTACGACCCGGTCGCGTACCGCATCGAGGCACTGATCAATCCCGATCTGAGCACGCTGGCCCCGGTCCTGATACCCCATCACAAGGGCCGAAACGGATGCACCTGGAGCTGAAGGAGACGGTACTGCGGGTGGGCAACGATTTGCGGCAGCGCGTCACGGACGTGTTCCGAACACGCTCGACACGGTGTACTCGCTGACGGCATGGGCTCCAAGCCCGATCCGAAGGCGATACAGAAGGAGGTGGATAAGGTGCTGCAGGATCAGCTGAAGTTTGATGCCGCCGGCTCGACGTCCAACCTGTCGTCCGGCACGAGCGATGTCGATAGTGGTGAGACGAATCTACCGCTCGGCAAGCTGAACCAGTCCCGGCGCGTCGATTACGTGCTGCAGGAGGCACCGTTTGAGTTCATCAACGAGTACTTGTTTGCGCTGACCAGCCATGTGTGCTATTGGGACTCCGAGGACACGATGCTGTTTCTGATGAAGGAAATCTACAGCAGTCTCGGCGTACAGACGGATCATCAAGTGCCGCAGCAAACGATGACGATCGAGCGGCCACTGGCTGGCACCAGCCCTACCGTGGCCGCCTCAAGCTGCTCTTTAAACAGCAATTATAATCTGTTCCCACAGGAAGTGCCACCGGCCCGAGATGCGCCTGACAATCGGCTATAGTTTGCACTGAGAGACAATTATGCTAATTTTGTTTGACACACAC------ACACCCGTAGCACACGGACAATCGGCCCTAGGCTGTAATACTCCGTGTATGGTCTTATCTAGTTGCTTACCTCGTTGTTTAAGTGGTCCTTATTTAAGAGTATTTTAATCGAGGGTGTACAATTTATGTTTCTCTTAAGTGTTTTCTTTTCCTCCTACTTGTTTTACTTAGTCTGTAGCTTGTTTGCTTTTTAAATCATAACGGAACGCGTGTAAAAGAAAGTTGTTGCAAATGGTTCGTCCGGAAGGTGTAGTCAGCTCGGTAGGTTTAGAACACTTGATATATCAACGCAGTACAGCGCACATTGTATCGTGCTAGGGTAGCTAAAACAA]

[+] EMBL AL697102             [CAGATCGCAGAGGTAATGCTCCAGCAGATCACTACGAAGTGGGACGGNCGGTACGGGCCAACCGTACATAACCTACCCGCAGCTAATGTTTCAGCCGAAGATGTTCTTCGCCCTCGGCTCACCGATCGGTATGTTCGTGACGATACGCGGCATCGATGCGCTGGGCCTGGACTTTAAGCTGCCGACGTGCGACGGGTTCTTTAACATATTCCACCCGTACGACCCGGTCGCGTACCGCATCGAGGCACTGATCAATCCCGATCTGAGCACGCTGGCCCCGGTCCTGATACCCCATCACAAGGGCCGAAACGGATGCACCTGGAGCTGAAGGAGACGGTACTGCGGGTGGGCAACGATTTGCGGCAGCGCGTCACGGACGTGTTCCGAACACGCTCGACACGGTGTACTCGCTGACGGCATGGGCTCCAAGCCCGATCCGAAGGCGATACAGAAGGAGGTGGATAAGGTGCTGCAGGATCAGCTGAAGTTTGATGCCGCCGGCTCGACGTCCAACCTGTCGTCCGGCACGAGCGATGTCGATAGTGGTGAGACGAATCTACCGCTCGGCAAGCTGAACCAGTCCCGGCGCGTCGATTACGTGCTGCAGGAGGCACCGTTTGAGTTCATCAACGAGTACTTGTTTGCGC                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                               ]
[+] EMBL BX611208             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                           ATGCCGCCGGCTCGACGTCCAACCTGTCGTCCGGCACGAGCGATGTCGATAGTGGCGAGACGAATCTTCCGCTCGGCAAGCTGAACCAGTCCCGGCGCGTCGATTACGTGCTGCAGGAGGCGCCGTTTGAGTTCATCAACGAGTACTTGTTTGCGCTGACCAGCCATGTGTGCTATTGGGACTCCGAGGACACGATGCTGTTTCTGATGAAGGAAATCTACAGCAGTCTCGGCGTACAGACGGATCATCAAGTGCCGCAGCAAACGATGACGATCGAGCGGCCACTGGCTGGCACCAGCCCTACCGTGGCCGCCTCAAGCTGCTCTTTAAACAGCAATTATAATCTGTTCCCACAGGAAGTGCCACCGGCCCGAGATGCGCCTGACAATCGGCTATAGTTTGCACTGAGAGACAATTATGCTAATTTTGTTTGACACACAC      ACACCCGTAGCACACGGACAATCGGCCCTAGGCTGTAATACTCCGTGTATGGTCTTATCTAGTTGCTTACCTCGTTGTTTAAGTGGTCCTTATTTAAGAGTATTTTAATCGAGGGTGTACAATTTATGTTTCTCTTAAGTGTTTTCTTTTCCTCCTACTTGTTTTACTTAGTCTGTAGCTTGTTTGCT                                                                                                                                                ]
[+] EMBL BM598117             [                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                                ccgCAACGAGTACTTGTTTGCGCTGACCAGTCATGTGTGCTATTGGGACTCCGAGGACACGATGCTGTTTCTGATGAAGGAAATCTACAGCAGTCTCGGCGTACAGACGGATCATCAAGTGCCGCAGCAAACGATGACGATCGAGCGGCCACTGGCCGGCACCAGCCCTACCGTGGCCGCCTCAAGCTGCTCTTTAAACAGCAATTACAATCTGTTCCCACAGGAAGTGCCACCGGCCCGAGATGCGCCTGACAATCGGCTATAGTTTGCACTGAGAGACAATTATGCTAATTTTGTTTGACACACACACACATACACCCGTAGCACACGGACAATAGGCCCTAGGCTGCAATACCCTGTGTATGGTCTTATCTAGTTGCTTACCTCGTTGTTTAAGTGGTCCTTATTTAAGAGTATTTTAATCGAGGGTGTACAATTTATGTTTCTCTTAAGTGTTTTCTTTTCCTCCTACTTGTTTTACTTAGTCTGTAGCTTGTTTGCTTTTTAAATCATAACGGAACGCGTGTAAAAGAAAGTTGTTGCAAATGGTTCGTCCGGAAGGTGTAGTCAGCTCGGTAGGTTTAGAACACTTGATATATCAACGCAGTACAGCGCACATTGTATCGTGCTAGGGTAGCTAAAACAA]


>consensus_5263#0 CAGATCGCAGAGGTAATGCTCCAGCAGATCACTACGAAGTGGGACGGNCGGTACGGGCCA ACCGTACATAACCTACCCGCAGCTAATGTTTCAGCCGAAGATGTTCTTCGCCCTCGGCTC ACCGATCGGTATGTTCGTGACGATACGCGGCATCGATGCGCTGGGCCTGGACTTTAAGCT GCCGACGTGCGACGGGTTCTTTAACATATTCCACCCGTACGACCCGGTCGCGTACCGCAT CGAGGCACTGATCAATCCCGATCTGAGCACGCTGGCCCCGGTCCTGATACCCCATCACAA GGGCCGAAACGGATGCACCTGGAGCTGAAGGAGACGGTACTGCGGGTGGGCAACGATTTG CGGCAGCGCGTCACGGACGTGTTCCGAACACGCTCGACACGGTGTACTCGCTGACGGCAT GGGCTCCAAGCCCGATCCGAAGGCGATACAGAAGGAGGTGGATAAGGTGCTGCAGGATCA GCTGAAGTTTGATGCCGCCGGCTCGACGTCCAACCTGTCGTCCGGCACGAGCGATGTCGA TAGTGGTGAGACGAATCTACCGCTCGGCAAGCTGAACCAGTCCCGGCGCGTCGATTACGT GCTGCAGGAGGCACCGTTTGAGTTCATCAACGAGTACTTGTTTGCGCTGACCAGCCATGT GTGCTATTGGGACTCCGAGGACACGATGCTGTTTCTGATGAAGGAAATCTACAGCAGTCT CGGCGTACAGACGGATCATCAAGTGCCGCAGCAAACGATGACGATCGAGCGGCCACTGGC TGGCACCAGCCCTACCGTGGCCGCCTCAAGCTGCTCTTTAAACAGCAATTATAATCTGTT CCCACAGGAAGTGCCACCGGCCCGAGATGCGCCTGACAATCGGCTATAGTTTGCACTGAG AGACAATTATGCTAATTTTGTTTGACACACACACACCCGTAGCACACGGACAATCGGCCC TAGGCTGTAATACTCCGTGTATGGTCTTATCTAGTTGCTTACCTCGTTGTTTAAGTGGTC CTTATTTAAGAGTATTTTAATCGAGGGTGTACAATTTATGTTTCTCTTAAGTGTTTTCTT TTCCTCCTACTTGTTTTACTTAGTCTGTAGCTTGTTTGCTTTTTAAATCATAACGGAACG CGTGTAAAAGAAAGTTGTTGCAAATGGTTCGTCCGGAAGGTGTAGTCAGCTCGGTAGGTT TAGAACACTTGATATATCAACGCAGTACAGCGCACATTGTATCGTGCTAGGGTAGCTAAA ACAA



consensusID : consensus_5263#1
NCBI blastX ! send the sequence to the NCBI site !
NCBI blastN ! send the sequence to the NCBI site !
Sequences nbr = 1
consensus length = 307
fasta sequence
                              [CCGCCCACGCGTCCGCGACGTCCAACCTGTCGTCCGGCACGAGCGATGTCAATAGTGGCGAGACCAATCTTCCGCTCGGCAAGCTGAACCAGTCCCGGCGCGTCGATTACGTGCTGCAGGAGGCGCCGTTTGAGTTCATCAACGAGTACTTGTTTGCTCTGACCAATCATGTGTGCTATTGGGACTCCGAGGACACGATGCTGGTTCTGATGAAGGAAATCTACAGCAGTCTCGGCGTACAGACGGATCATCAAGTGCCGCAGAAAACGATGACGATCGAGCGGCCACTGGCTGGCACCAGCCCTAC]

[+] EMBL BM621153             [CCGCCCACGCGTCCGCGACGTCCAACCTGTCGTCCGGCACGAGCGATGTCAATAGTGGCGAGACCAATCTTCCGCTCGGCAAGCTGAACCAGTCCCGGCGCGTCGATTACGTGCTGCAGGAGGCGCCGTTTGAGTTCATCAACGAGTACTTGTTTGCTCTGACCAATCATGTGTGCTATTGGGACTCCGAGGACACGATGCTGGTTCTGATGAAGGAAATCTACAGCAGTCTCGGCGTACAGACGGATCATCAAGTGCCGCAGAAAACGATGACGATCGAGCGGCCACTGGCTGGCACCAGCCCTAC]


>consensus_5263#1 CCGCCCACGCGTCCGCGACGTCCAACCTGTCGTCCGGCACGAGCGATGTCAATAGTGGCG AGACCAATCTTCCGCTCGGCAAGCTGAACCAGTCCCGGCGCGTCGATTACGTGCTGCAGG AGGCGCCGTTTGAGTTCATCAACGAGTACTTGTTTGCTCTGACCAATCATGTGTGCTATT GGGACTCCGAGGACACGATGCTGGTTCTGATGAAGGAAATCTACAGCAGTCTCGGCGTAC AGACGGATCATCAAGTGCCGCAGAAAACGATGACGATCGAGCGGCCACTGGCTGGCACCA GCCCTAC



consensus multiple alignement with clustalw

CLUSTAL W (1.82) multiple sequence alignment


consensus_5263#0      CAGATCGCAGAGGTAATGCTCCAGCAGATCACTACGAAGTGGGACGGNCGGTACGGGCCA 60
consensus_5263#1      ------------------------------------------------------------
                                                                                  

consensus_5263#0      ACCGTACATAACCTACCCGCAGCTAATGTTTCAGCCGAAGATGTTCTTCGCCCTCGGCTC 120
consensus_5263#1      ------------------------------------------------------------
                                                                                  

consensus_5263#0      ACCGATCGGTATGTTCGTGACGATACGCGGCATCGATGCGCTGGGCCTGGACTTTAAGCT 180
consensus_5263#1      ------------------------------------------------------------
                                                                                  

consensus_5263#0      GCCGACGTGCGACGGGTTCTTTAACATATTCCACCCGTACGACCCGGTCGCGTACCGCAT 240
consensus_5263#1      ------------------------------------------------------------
                                                                                  

consensus_5263#0      CGAGGCACTGATCAATCCCGATCTGAGCACGCTGGCCCCGGTCCTGATACCCCATCACAA 300
consensus_5263#1      ------------------------------------------------------------
                                                                                  

consensus_5263#0      GGGCCGAAACGGATGCACCTGGAGCTGAAGGAGACGGTACTGCGGGTGGGCAACGATTTG 360
consensus_5263#1      ------------------------------------------------------------
                                                                                  

consensus_5263#0      CGGCAGCGCGTCACGGACGTGTTCCGAACACGCTCGACACGGTGTACTCGCTGACGGCAT 420
consensus_5263#1      ------------------------------------------------------------
                                                                                  

consensus_5263#0      GGGCTCCAAGCCCGATCCGAAGGCGATACAGAAGGAGGTGGATAAGGTGCTGCAGGATCA 480
consensus_5263#1      ------------------------------------------------------------
                                                                                  

consensus_5263#0      GCTGAAGTTTGATGCCGCCGGCTCGACGTCCAACCTGTCGTCCGGCACGAGCGATGTCGA 540
consensus_5263#1      --------CCGCCCACGCGTCCGCGACGTCCAACCTGTCGTCCGGCACGAGCGATGTCAA 52
                                *    ***   * *********************************** *

consensus_5263#0      TAGTGGTGAGACGAATCTACCGCTCGGCAAGCTGAACCAGTCCCGGCGCGTCGATTACGT 600
consensus_5263#1      TAGTGGCGAGACCAATCTTCCGCTCGGCAAGCTGAACCAGTCCCGGCGCGTCGATTACGT 112
                      ****** ***** ***** *****************************************

consensus_5263#0      GCTGCAGGAGGCACCGTTTGAGTTCATCAACGAGTACTTGTTTGCGCTGACCAGCCATGT 660
consensus_5263#1      GCTGCAGGAGGCGCCGTTTGAGTTCATCAACGAGTACTTGTTTGCTCTGACCAATCATGT 172
                      ************ ******************************** *******  *****

consensus_5263#0      GTGCTATTGGGACTCCGAGGACACGATGCTGTTTCTGATGAAGGAAATCTACAGCAGTCT 720
consensus_5263#1      GTGCTATTGGGACTCCGAGGACACGATGCTGGTTCTGATGAAGGAAATCTACAGCAGTCT 232
                      ******************************* ****************************

consensus_5263#0      CGGCGTACAGACGGATCATCAAGTGCCGCAGCAAACGATGACGATCGAGCGGCCACTGGC 780
consensus_5263#1      CGGCGTACAGACGGATCATCAAGTGCCGCAGAAAACGATGACGATCGAGCGGCCACTGGC 292
                      ******************************* ****************************

consensus_5263#0      TGGCACCAGCCCTACCGTGGCCGCCTCAAGCTGCTCTTTAAACAGCAATTATAATCTGTT 840
consensus_5263#1      TGGCACCAGCCCTAC--------------------------------------------- 307
                      ***************                                             

consensus_5263#0      CCCACAGGAAGTGCCACCGGCCCGAGATGCGCCTGACAATCGGCTATAGTTTGCACTGAG 900
consensus_5263#1      ------------------------------------------------------------
                                                                                  

consensus_5263#0      AGACAATTATGCTAATTTTGTTTGACACACACACACCCGTAGCACACGGACAATCGGCCC 960
consensus_5263#1      ------------------------------------------------------------
                                                                                  

consensus_5263#0      TAGGCTGTAATACTCCGTGTATGGTCTTATCTAGTTGCTTACCTCGTTGTTTAAGTGGTC 1020
consensus_5263#1      ------------------------------------------------------------
                                                                                  

consensus_5263#0      CTTATTTAAGAGTATTTTAATCGAGGGTGTACAATTTATGTTTCTCTTAAGTGTTTTCTT 1080
consensus_5263#1      ------------------------------------------------------------
                                                                                  

consensus_5263#0      TTCCTCCTACTTGTTTTACTTAGTCTGTAGCTTGTTTGCTTTTTAAATCATAACGGAACG 1140
consensus_5263#1      ------------------------------------------------------------
                                                                                  

consensus_5263#0      CGTGTAAAAGAAAGTTGTTGCAAATGGTTCGTCCGGAAGGTGTAGTCAGCTCGGTAGGTT 1200
consensus_5263#1      ------------------------------------------------------------
                                                                                  

consensus_5263#0      TAGAACACTTGATATATCAACGCAGTACAGCGCACATTGTATCGTGCTAGGGTAGCTAAA 1260
consensus_5263#1      ------------------------------------------------------------
                                                                                  

consensus_5263#0      ACAA 1264
consensus_5263#1      ----
                          




Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner    (hubert.wassner@noos.fr)